Phyre Home Retrieve Phyre Job Id
Emailmdejesus@rockefeller.edu
DescriptionRVBD0412c_(-)_498303_499622
DateTue Jul 23 14:50:48 BST 2019
Unique Job ID7542c0a10a34133f
SequenceVTVELAHPST ... Download FASTA
Job Typenormal
Job Expiry

Summary 

Top model
Image coloured by rainbow N → C terminus
Model dimensions (Å):X:42.192 Y:29.559 Z:64.879
Model (left) based on template c5xuaB_
Top template information
PDB header:signaling protein
Chain: B: PDB Molecule:methyl-accepting chemotaxis sensory transducer;
PDBTitle: the ligand-free dimer of chemoreceptor mcp2201 ligand binding domain
Confidence and coverage
Confidence: 91.1% Coverage: 29%
129 residues ( 29% of your sequence) have been modelled with 91.1% confidence by the single highest scoring template.
You may wish to submit your sequence to Phyrealarm. This will automatically scan your sequence every week for new potential templates as they appear in the Phyre2 library.
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Sequence analysis 

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Secondary structure and disorder prediction [Show] 

Domain analysis [Show] 

Detailed template information [Hide] 

 

#
Template Alignment Coverage3D Model Confidence
% i.d. Template Information
1c5xuaB_



91.1 12
PDB header:signaling protein
Chain: B: PDB Molecule:methyl-accepting chemotaxis sensory transducer;
PDBTitle: the ligand-free dimer of chemoreceptor mcp2201 ligand binding domain
2c4z9hA_



67.3 13
PDB header:protein binding
Chain: A: PDB Molecule:methyl-accepting chemotaxis protein ii;
PDBTitle: asp-tar from e. coli
3c5awwG_



60.5 39
PDB header:protein transport/immune system
Chain: G: PDB Molecule:putative preprotein translocase, secg subunit;
PDBTitle: precise resting state of thermus thermophilus secyeg
4c2d4uA_



50.2 10
PDB header:signaling protein
Chain: A: PDB Molecule:methyl-accepting chemotaxis protein i;
PDBTitle: crystal structure of the ligand binding domain of the bacterial serine2 chemoreceptor tsr
5c5nf8A_



43.7 16
PDB header:membrane protein
Chain: A: PDB Molecule:respiratory supercomplex factor 1, mitochondrial;
PDBTitle: solution structure of detergent-solubilized rcf1, a yeast2 mitochondrial inner membrane protein involved in respiratory complex3 iii/iv supercomplex formation
6c3va9A_



38.3 11
PDB header:transferase
Chain: A: PDB Molecule:sensor histidine kinase;
PDBTitle: crystal structure of the rhodopseudomonas palustris histidine kinase2 hk9 sensor domain
7c6f46A_



27.9 23
PDB header:apoptosis
Chain: A: PDB Molecule:bcl-2-like protein 1;
PDBTitle: structure of the transmembrane helix of bclxl in phospholipid2 nanodiscs
8c2mkvA_



26.3 22
PDB header:transport protein
Chain: A: PDB Molecule:sodium/potassium-transporting atpase subunit gamma;
PDBTitle: structure of the na,k-atpase regulatory protein fxyd2b in micelles
9d2liga_



26.1 17
Fold:Four-helical up-and-down bundle
Superfamily:Aspartate receptor, ligand-binding domain
Family:Aspartate receptor, ligand-binding domain
10c2kncA_



20.1 10
PDB header:cell adhesion
Chain: A: PDB Molecule:integrin alpha-iib;
PDBTitle: platelet integrin alfaiib-beta3 transmembrane-cytoplasmic2 heterocomplex
11c6hwhX_



19.9 15
PDB header:electron transport
Chain: X: PDB Molecule:cytochrome c oxidase polypeptide 4;
PDBTitle: structure of a functional obligate respiratory supercomplex from2 mycobacterium smegmatis
12c2lonA_



15.2 15
PDB header:membrane protein
Chain: A: PDB Molecule:hig1 domain family member 1b;
PDBTitle: backbone structure of human membrane protein higd1b
13d2itba1



14.8 13
Fold:Ferritin-like
Superfamily:Ferritin-like
Family:MiaE-like
14c6h9cD_



14.5 63
PDB header:virus
Chain: D: PDB Molecule:vp7;
PDBTitle: cryo-em structure of archaeal extremophilic internal membrane-2 containing haloarcula californiae icosahedral virus 1 (hciv-1) at3 3.74 angstroms resolution.
15c6f87C_



14.2 23
PDB header:transferase
Chain: C: PDB Molecule:threonylcarbamoyl-amp synthase;
PDBTitle: crystal structure of p. abyssi sua5 complexed with l-threonine and ppi
16c1n7sA_



12.7 25
PDB header:transport protein
Chain: A: PDB Molecule:vesicle-associated membrane protein 2;
PDBTitle: high resolution structure of a truncated neuronal snare complex
17c5ireD_



10.5 27
PDB header:virus
Chain: D: PDB Molecule:m protein;
PDBTitle: the cryo-em structure of zika virus
18c4xypA_



9.8 44
PDB header:viral protein
Chain: A: PDB Molecule:fusion protein;
PDBTitle: crystal structure of a piscine viral fusion protein
19c6jimA_



9.7 20
PDB header:viral protein/rna
Chain: A: PDB Molecule:helicase;
PDBTitle: viral helicase protein
20c5wsnD_



9.5 23
PDB header:virus
Chain: D: PDB Molecule:m protein;
PDBTitle: structure of japanese encephalitis virus
21c4qr8B_



not modelled 9.5 12
PDB header:hydrolase
Chain: B: PDB Molecule:xaa-pro dipeptidase;
PDBTitle: crystal structure of e coli pepq
22c6adqP_



not modelled 9.0 28
PDB header:electron transport
Chain: P: PDB Molecule:prokaryotic respiratory supercomplex associate factor 1
PDBTitle: respiratory complex ciii2civ2sod2 from mycobacterium smegmatis
23c2mgxA_



not modelled 9.0 18
PDB header:unknown function
Chain: A: PDB Molecule:steroid receptor rna activator 1;
PDBTitle: nmr structure of sra1p c-terminal domain
24c6an7D_



not modelled 8.7 7
PDB header:transport protein
Chain: D: PDB Molecule:transport permease protein;
PDBTitle: crystal structure of o-antigen polysaccharide abc-transporter
25c6cc4A_



not modelled 8.4 19
PDB header:transport protein
Chain: A: PDB Molecule:soluble cytochrome b562, lipid ii flippase murj chimera;
PDBTitle: structure of murj from escherichia coli
26c3j2pD_



not modelled 8.4 9
PDB header:viral protein
Chain: D: PDB Molecule:small envelope protein m;
PDBTitle: cryoem structure of dengue virus envelope protein heterotetramer
27c3mzlH_



not modelled 7.9 19
PDB header:protein transport
Chain: H: PDB Molecule:protein transport protein sec31;
PDBTitle: sec13/sec31 edge element, loop deletion mutant
28c4wfaU_



not modelled 7.7 44
PDB header:ribosome
Chain: U: PDB Molecule:50s ribosomal protein l28;
PDBTitle: the crystal structure of the large ribosomal subunit of staphylococcus2 aureus in complex with linezolid
29c1qw1A_



not modelled 7.4 31
PDB header:gene regulation
Chain: A: PDB Molecule:diphtheria toxin repressor;
PDBTitle: solution structure of the c-terminal domain of dtxr2 residues 110-226
30c3mb2J_



not modelled 7.3 50
PDB header:isomerase
Chain: J: PDB Molecule:4-oxalocrotonate tautomerase family enzyme - beta subunit;
PDBTitle: kinetic and structural characterization of a heterohexamer 4-2 oxalocrotonate tautomerase from chloroflexus aurantiacus j-10-fl:3 implications for functional and structural diversity in the4 tautomerase superfamily
31c6hwhT_



not modelled 7.3 12
PDB header:electron transport
Chain: T: PDB Molecule:uncharacterized protein msmeg_4692/msmei_4575;
PDBTitle: structure of a functional obligate respiratory supercomplex from2 mycobacterium smegmatis
32c1gl2A_



not modelled 7.0 29
PDB header:membrane protein
Chain: A: PDB Molecule:endobrevin;
PDBTitle: crystal structure of an endosomal snare core complex
33c4cbfB_



not modelled 6.9 23
PDB header:virus
Chain: B: PDB Molecule:m protein;
PDBTitle: near-atomic resolution cryo-em structure of dengue serotype 4 virus
34c2pm7A_



not modelled 6.7 19
PDB header:protein transport
Chain: A: PDB Molecule:protein transport protein sec31;
PDBTitle: crystal structure of yeast sec13/31 edge element of the copii2 vesicular coat, selenomethionine version
35c2yruA_



not modelled 6.6 12
PDB header:apoptosis
Chain: A: PDB Molecule:steroid receptor rna activator 1;
PDBTitle: solution structure of mouse steroid receptor rna activator2 1 (sra1) protein
36c1sfcI_



not modelled 6.5 25
PDB header:transport protein
Chain: I: PDB Molecule:protein (synaptobrevin 2);
PDBTitle: neuronal synaptic fusion complex
37c1p58E_



not modelled 6.5 9
PDB header:virus
Chain: E: PDB Molecule:envelope protein m;
PDBTitle: complex organization of dengue virus membrane proteins as revealed by2 9.5 angstrom cryo-em reconstruction
38c2lomA_



not modelled 6.5 6
PDB header:membrane protein
Chain: A: PDB Molecule:hig1 domain family member 1a;
PDBTitle: backbone structure of human membrane protein higd1a
39c5ux1D_



not modelled 6.4 14
PDB header:lyase
Chain: D: PDB Molecule:trna-(ms(2)io(6)a)-hydroxylase-like;
PDBTitle: protein 43 with aldehyde deformylating oxygenase activity from2 synechococcus
40d1hw1a2



not modelled 6.4 7
Fold:GntR ligand-binding domain-like
Superfamily:GntR ligand-binding domain-like
Family:GntR ligand-binding domain-like
41c1urqA_



not modelled 6.2 18
PDB header:transport protein
Chain: A: PDB Molecule:m-tomosyn isoform;
PDBTitle: crystal structure of neuronal q-snares in complex with r-snare motif2 of tomosyn
42c6an7C_



not modelled 6.2 7
PDB header:transport protein
Chain: C: PDB Molecule:transport permease protein;
PDBTitle: crystal structure of o-antigen polysaccharide abc-transporter
43c3hd7A_



not modelled 6.1 25
PDB header:exocytosis
Chain: A: PDB Molecule:vesicle-associated membrane protein 2;
PDBTitle: helical extension of the neuronal snare complex into the membrane,2 spacegroup c 1 2 1
44d2hs5a2



not modelled 6.1 24
Fold:GntR ligand-binding domain-like
Superfamily:GntR ligand-binding domain-like
Family:GntR ligand-binding domain-like
45c3dwlG_



not modelled 6.0 21
PDB header:structural protein
Chain: G: PDB Molecule:actin-related protein 2/3 complex subunit 5;
PDBTitle: crystal structure of fission yeast arp2/3 complex lacking the arp22 subunit
46d1jr1a4



not modelled 5.6 43
Fold:CBS-domain pair
Superfamily:CBS-domain pair
Family:CBS-domain pair
47c5j12A_



not modelled 5.4 36
PDB header:signaling protein
Chain: A: PDB Molecule:thymic stromal lymphopoietin;
PDBTitle: structure of human tslp:tslpr in complex with mouse il-7ralpha
48c3gw4B_



not modelled 5.3 15
PDB header:structural genomics, unknown function
Chain: B: PDB Molecule:uncharacterized protein;
PDBTitle: crystal structure of uncharacterized protein from deinococcus2 radiodurans. northeast structural genomics consortium target drr162b.
49c6gv9K_



not modelled 5.3 17
PDB header:protein fibril
Chain: K: PDB Molecule:prepilin peptidase-dependent protein d;
PDBTitle: structure of the type iv pilus from enterohemorrhagic escherichia coli2 (ehec)
50c3b5nE_



not modelled 5.3 21
PDB header:membrane protein
Chain: E: PDB Molecule:synaptobrevin homolog 1;
PDBTitle: structure of the yeast plasma membrane snare complex
51c2eqaA_



not modelled 5.2 18
PDB header:rna binding protein
Chain: A: PDB Molecule:hypothetical protein st1526;
PDBTitle: crystal structure of the hypothetical sua5 protein from2 sulfolobus tokodaii
52d2axth1



not modelled 5.2 10
Fold:Single transmembrane helix
Superfamily:Photosystem II 10 kDa phosphoprotein PsbH
Family:PsbH-like
53c2axtH_



not modelled 5.2 10
PDB header:electron transport
Chain: H: PDB Molecule:photosystem ii reaction center h protein;
PDBTitle: crystal structure of photosystem ii from thermosynechococcus elongatus
54d1ff3c_



not modelled 5.1 45
Fold:Ferredoxin-like
Superfamily:Peptide methionine sulfoxide reductase
Family:Peptide methionine sulfoxide reductase
55c2vxgB_



not modelled 5.1 24
PDB header:gene regulation
Chain: B: PDB Molecule:cg6181-pa, isoform a;
PDBTitle: crystal structure of the conserved c-terminal region of ge-2 1
56c3csxA_



not modelled 5.0 35
PDB header:metal binding protein,unknown function
Chain: A: PDB Molecule:putative uncharacterized protein;
PDBTitle: structural characterization of a protein in the duf6832 family- crystal structure of cce_0567 from the3 cyanobacterium cyanothece 51142.

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Transmembrane helix prediction 

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