Phyre Home Retrieve Phyre Job Id
Emailmdejesus@rockefeller.edu
DescriptionRVBD0429c_(def)_517806_518399
DateTue Jul 23 14:50:50 BST 2019
Unique Job IDedc4afb3f9802d33
SequenceMAVVPIRIVG ... Download FASTA
Job Typenormal
Job Expiry

Summary 

Top model
Image coloured by rainbow N → C terminus
Model dimensions (Å):X:44.093 Y:49.230 Z:43.417
Model (left) based on template c3e3uA_
Top template information
PDB header:hydrolase
Chain: A: PDB Molecule:peptide deformylase;
PDBTitle: crystal structure of mycobacterium tuberculosis peptide2 deformylase in complex with inhibitor
Confidence and coverage
Confidence:100.0% Coverage: 99%
196 residues ( 99% of your sequence) have been modelled with 100.0% confidence by the single highest scoring template.
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Sequence analysis 

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Secondary structure and disorder prediction [Show] 

Domain analysis [Show] 

Detailed template information [Hide] 

 

#
Template Alignment Coverage3D Model Confidence
% i.d. Template Information
1c3e3uA_
100.0 100
PDB header:hydrolase
Chain: A: PDB Molecule:peptide deformylase;
PDBTitle: crystal structure of mycobacterium tuberculosis peptide2 deformylase in complex with inhibitor
2c3ocaB_
100.0 31
PDB header:hydrolase
Chain: B: PDB Molecule:peptide deformylase;
PDBTitle: crystal structure of peptide deformylase from ehrlichia chaffeensis
3c5j46A_
100.0 33
PDB header:hydrolase
Chain: A: PDB Molecule:peptide deformylase;
PDBTitle: crystal structure of a peptide deformylase from burkholderia2 multivorans
4c3cpmA_
100.0 27
PDB header:hydrolase
Chain: A: PDB Molecule:peptide deformylase, chloroplast;
PDBTitle: plant peptide deformylase pdf1b crystal structure
5d1ix1a_
100.0 37
Fold:Peptide deformylase
Superfamily:Peptide deformylase
Family:Peptide deformylase
6d1y6ha_
100.0 34
Fold:Peptide deformylase
Superfamily:Peptide deformylase
Family:Peptide deformylase
7c2w3tA_
100.0 33
PDB header:hydrolase
Chain: A: PDB Molecule:peptide deformylase;
PDBTitle: chloro complex of the ni-form of e.coli deformylase
8c2ew7A_
100.0 30
PDB header:hydrolase
Chain: A: PDB Molecule:peptide deformylase;
PDBTitle: crystal structure of helicobacter pylori peptide deformylase
9c3g5pB_
100.0 34
PDB header:hydrolase
Chain: B: PDB Molecule:peptide deformylase, mitochondrial;
PDBTitle: structure and activity of human mitochondrial peptide deformylase, a2 novel cancer target
10d1xeoa1
100.0 33
Fold:Peptide deformylase
Superfamily:Peptide deformylase
Family:Peptide deformylase
11c1zy1B_
100.0 36
PDB header:hydrolase
Chain: B: PDB Molecule:peptide deformylase, mitochondrial;
PDBTitle: x-ray structure of peptide deformylase from arabidopsis2 thaliana (atpdf1a) in complex with met-ala-ser
12c3qu1B_
100.0 36
PDB header:hydrolase, metal binding protein
Chain: B: PDB Molecule:peptide deformylase 2;
PDBTitle: peptide deformylase from vibrio cholerae
13c6cazA_
100.0 40
PDB header:hydrolase
Chain: A: PDB Molecule:peptide deformylase;
PDBTitle: crystal structure of a peptide deformylase from legionella pneumophila
14c4dr9C_
100.0 35
PDB header:hydrolase/hydrolase inhibitor
Chain: C: PDB Molecule:peptide deformylase;
PDBTitle: crystal structure of a peptide deformylase from synechococcus2 elongatus in complex with actinonin
15c5hgwA_
100.0 35
PDB header:hydrolase
Chain: A: PDB Molecule:peptide deformylase;
PDBTitle: crystal structure of a peptide deformylase from burkholderia ambifaria
16d1jyma_
100.0 23
Fold:Peptide deformylase
Superfamily:Peptide deformylase
Family:Peptide deformylase
17c4wxlB_
100.0 33
PDB header:hydrolase
Chain: B: PDB Molecule:peptide deformylase;
PDBTitle: crystal structure of a peptide deformylase from haemophilus influenzae2 complex with actinonin
18c3dldA_
100.0 36
PDB header:hydrolase
Chain: A: PDB Molecule:peptide deformylase;
PDBTitle: crystal structure of peptide deformylase, xoo1075, from xanthomonas2 oryzae pv. oryzae kacc10331
19d1rl4a_
100.0 27
Fold:Peptide deformylase
Superfamily:Peptide deformylase
Family:Peptide deformylase
20c3g6nA_
100.0 24
PDB header:hydrolase
Chain: A: PDB Molecule:peptide deformylase;
PDBTitle: crystal structure of an efpdf complex with met-ala-ser
21d1lqya_
not modelled 100.0 28
Fold:Peptide deformylase
Superfamily:Peptide deformylase
Family:Peptide deformylase
22c1ws1A_
not modelled 100.0 36
PDB header:hydrolase
Chain: A: PDB Molecule:peptide deformylase 1;
PDBTitle: structure analysis of peptide deformylase from bacillus2 cereus
23d1lm4a_
not modelled 100.0 21
Fold:Peptide deformylase
Superfamily:Peptide deformylase
Family:Peptide deformylase
24d1v3ya_
not modelled 100.0 41
Fold:Peptide deformylase
Superfamily:Peptide deformylase
Family:Peptide deformylase
25d1lm6a_
not modelled 100.0 24
Fold:Peptide deformylase
Superfamily:Peptide deformylase
Family:Peptide deformylase
26c3uwaA_
not modelled 100.0 31
PDB header:hydrolase
Chain: A: PDB Molecule:riia-riib membrane-associated protein;
PDBTitle: crystal structure of a probable peptide deformylase from synechococcus2 phage s-ssm7
27d1lmea_
not modelled 100.0 37
Fold:Peptide deformylase
Superfamily:Peptide deformylase
Family:Peptide deformylase
28d2defa_
not modelled 100.0 36
Fold:Peptide deformylase
Superfamily:Peptide deformylase
Family:Peptide deformylase
29c3l87A_
not modelled 100.0 20
PDB header:hydrolase
Chain: A: PDB Molecule:peptide deformylase;
PDBTitle: the crystal structure of smu.143c from streptococcus mutans ua159
30c5mtcA_
not modelled 100.0 39
PDB header:hydrolase
Chain: A: PDB Molecule:putative uncharacterized protein orf60t;
PDBTitle: crystal structure of pdf from the vibrio parahaemolyticus2 bacteriophage vp16t - crystal form i
31d1quaa_
not modelled 36.2 44
Fold:Zincin-like
Superfamily:Metalloproteases ("zincins"), catalytic domain
Family:Reprolysin-like
32c2kvzA_
not modelled 35.0 17
PDB header:structural genomics, unknown function
Chain: A: PDB Molecule:ispe;
PDBTitle: structure of residues 161-235 of putative peptidoglycan binding2 protein lmo0835 from listeria monocytogenes: target lmr64b of the3 northeast structural genomics consortium
33d1wnia_
not modelled 31.2 40
Fold:Zincin-like
Superfamily:Metalloproteases ("zincins"), catalytic domain
Family:Reprolysin-like
34d1nd1a_
not modelled 31.2 40
Fold:Zincin-like
Superfamily:Metalloproteases ("zincins"), catalytic domain
Family:Reprolysin-like
35c1yp1A_
not modelled 31.1 47
PDB header:hydrolase
Chain: A: PDB Molecule:fii;
PDBTitle: crystal structure of a non-hemorrhagic fibrin(ogen)olytic2 metalloproteinase from venom of agkistrodon acutus
36c5uebA_
not modelled 30.8 23
PDB header:unknown function
Chain: A: PDB Molecule:negoa.19184.a;
PDBTitle: novel crystal structure of a hypothetical protein from neisseria2 gonorrhoeae
37d1bswa_
not modelled 30.4 44
Fold:Zincin-like
Superfamily:Metalloproteases ("zincins"), catalytic domain
Family:Reprolysin-like
38d1r55a_
not modelled 29.6 40
Fold:Zincin-like
Superfamily:Metalloproteases ("zincins"), catalytic domain
Family:Reprolysin-like
39d4aiga_
not modelled 28.8 47
Fold:Zincin-like
Superfamily:Metalloproteases ("zincins"), catalytic domain
Family:Reprolysin-like
40d1wmha_
not modelled 27.3 13
Fold:beta-Grasp (ubiquitin-like)
Superfamily:CAD & PB1 domains
Family:PB1 domain
41c3k7nA_
not modelled 27.1 47
PDB header:hydrolase
Chain: A: PDB Molecule:k-like;
PDBTitle: structures of two elapid snake venom metalloproteases with2 distinct activities highlight the disulfide patterns in the3 d domain of adamalysin family proteins
42c3k7lA_
not modelled 26.3 40
PDB header:hydrolase
Chain: A: PDB Molecule:atragin;
PDBTitle: structures of two elapid snake venom metalloproteases with2 distinct activities highlight the disulfide patterns in the3 d domain of adamalysin family proteins
43d1atla_
not modelled 26.1 38
Fold:Zincin-like
Superfamily:Metalloproteases ("zincins"), catalytic domain
Family:Reprolysin-like
44d1pqsa_
not modelled 25.9 11
Fold:beta-Grasp (ubiquitin-like)
Superfamily:CAD & PB1 domains
Family:PB1 domain
45d1kufa_
not modelled 25.2 40
Fold:Zincin-like
Superfamily:Metalloproteases ("zincins"), catalytic domain
Family:Reprolysin-like
46c2dw1B_
not modelled 22.2 40
PDB header:apoptosis, toxin
Chain: B: PDB Molecule:catrocollastatin;
PDBTitle: crystal structure of vap2 from crotalus atrox venom (form 2-2 crystal)
47c2erpA_
not modelled 21.7 47
PDB header:toxin
Chain: A: PDB Molecule:vascular apoptosis-inducing protein 1;
PDBTitle: crystal structure of vascular apoptosis-inducing protein-1(inhibitor-2 bound form)
48c2e3xA_
not modelled 20.9 33
PDB header:hydrolase, blood clotting, toxin
Chain: A: PDB Molecule:coagulation factor x-activating enzyme heavy chain;
PDBTitle: crystal structure of russell's viper venom metalloproteinase
49d1ip9a_
not modelled 18.9 19
Fold:beta-Grasp (ubiquitin-like)
Superfamily:CAD & PB1 domains
Family:PB1 domain
50c1z5sD_
not modelled 18.7 40
PDB header:ligase
Chain: D: PDB Molecule:ran-binding protein 2;
PDBTitle: crystal structure of a complex between ubc9, sumo-1,2 rangap1 and nup358/ranbp2
51c3b8zB_
not modelled 18.1 54
PDB header:hydrolase
Chain: B: PDB Molecule:protein adamts-5;
PDBTitle: high resolution crystal structure of the catalytic domain of adamts-52 (aggrecanase-2)
52d2ap1a2
not modelled 17.9 9
Fold:Ribonuclease H-like motif
Superfamily:Actin-like ATPase domain
Family:ROK
53d1ytqa1
not modelled 17.5 16
Fold:gamma-Crystallin-like
Superfamily:gamma-Crystallin-like
Family:Crystallins/Ca-binding development proteins
54c4dd8B_
not modelled 17.3 40
PDB header:hydrolase/hydrolase inhibitor
Chain: B: PDB Molecule:disintegrin and metalloproteinase domain-containing protein
PDBTitle: adam-8 metalloproteinase domain with bound batimastat
55c2i47A_
not modelled 16.7 33
PDB header:hydrolase
Chain: A: PDB Molecule:adam 17;
PDBTitle: crystal structure of catalytic domain of tace with inhibitor
56d1q1oa_
not modelled 16.7 15
Fold:beta-Grasp (ubiquitin-like)
Superfamily:CAD & PB1 domains
Family:PB1 domain
57c2kt7A_
not modelled 16.0 28
PDB header:cell adhesion, membrane protein
Chain: A: PDB Molecule:putative peptidoglycan bound protein (lpxtg
PDBTitle: solution nmr structure of mucin-binding domain of protein2 lmo0835 from listeria monocytogenes, northeast structural3 genomics consortium target lmr64a
58c2rjpC_
not modelled 15.5 31
PDB header:hydrolase
Chain: C: PDB Molecule:adamts-4;
PDBTitle: crystal structure of adamts4 with inhibitor bound
59d2i47a1
not modelled 14.8 33
Fold:Zincin-like
Superfamily:Metalloproteases ("zincins"), catalytic domain
Family:TNF-alpha converting enzyme, TACE, catalytic domain
60c5o9zN_
not modelled 14.2 29
PDB header:splicing
Chain: N: PDB Molecule:zinc finger matrin-type protein 2;
PDBTitle: cryo-em structure of a pre-catalytic human spliceosome primed for2 activation (b complex)
61d1c7ka_
not modelled 14.0 58
Fold:Zincin-like
Superfamily:Metalloproteases ("zincins"), catalytic domain
Family:Zinc protease
62d1cxva_
not modelled 13.4 36
Fold:Zincin-like
Superfamily:Metalloproteases ("zincins"), catalytic domain
Family:Matrix metalloproteases, catalytic domain
63c4fd9B_
not modelled 13.4 20
PDB header:structural protein
Chain: B: PDB Molecule:beta/gamma crystallin domain-containing protein 3;
PDBTitle: crystal structure of the third beta-gamma-crystallin domain of crybg32 (betagamma-crystallin domain-containing protein 3) from mus musculus
64c3g5cA_
not modelled 13.4 31
PDB header:membrane protein
Chain: A: PDB Molecule:adam 22;
PDBTitle: structural and biochemical studies on the ectodomain of human adam22
65c5ttaB_
not modelled 13.2 13
PDB header:structural genomics, unknown function
Chain: B: PDB Molecule:putative exported protein;
PDBTitle: a 1.85a x-ray structure from peptoclostridium difficile 630 of a2 hypothetical protein
66d1hv5a_
not modelled 13.1 45
Fold:Zincin-like
Superfamily:Metalloproteases ("zincins"), catalytic domain
Family:Matrix metalloproteases, catalytic domain
67d1hova_
not modelled 12.6 45
Fold:Zincin-like
Superfamily:Metalloproteases ("zincins"), catalytic domain
Family:Matrix metalloproteases, catalytic domain
68d2bkfa1
not modelled 12.2 27
Fold:beta-Grasp (ubiquitin-like)
Superfamily:CAD & PB1 domains
Family:PB1 domain
69c1ytqA_
not modelled 12.1 16
PDB header:structural protein
Chain: A: PDB Molecule:beta crystallin b2;
PDBTitle: structure of native human beta b2 crystallin
70d1fbla2
not modelled 11.7 45
Fold:Zincin-like
Superfamily:Metalloproteases ("zincins"), catalytic domain
Family:Matrix metalloproteases, catalytic domain
71d1xuca1
not modelled 11.5 45
Fold:Zincin-like
Superfamily:Metalloproteases ("zincins"), catalytic domain
Family:Matrix metalloproteases, catalytic domain
72d1i76a_
not modelled 11.2 45
Fold:Zincin-like
Superfamily:Metalloproteases ("zincins"), catalytic domain
Family:Matrix metalloproteases, catalytic domain
73d1qiba_
not modelled 11.0 45
Fold:Zincin-like
Superfamily:Metalloproteases ("zincins"), catalytic domain
Family:Matrix metalloproteases, catalytic domain
74c5l20A_
not modelled 10.9 25
PDB header:hydrolase/hydrolase inhibitor
Chain: A: PDB Molecule:clostripain-related protein;
PDBTitle: crystal structure of a clostripain (bt_0727) from bacteroides2 thetaiotaomicron atcc 29148 in complex with peptide inhibitor btn-3 vltk-aomk
75c6evuA_
not modelled 10.7 22
PDB header:cell adhesion
Chain: A: PDB Molecule:prgb;
PDBTitle: adhesin domain of prgb from enterococcus faecalis
76c6be6D_
not modelled 10.5 33
PDB header:membrane protein
Chain: D: PDB Molecule:disintegrin and metalloproteinase domain-containing protein
PDBTitle: adam10 extracellular domain
77c2xs4A_
not modelled 10.5 55
PDB header:hydrolase
Chain: A: PDB Molecule:karilysin protease;
PDBTitle: structure of karilysin catalytic mmp domain in complex with magnesium
78d1hy7a_
not modelled 10.4 45
Fold:Zincin-like
Superfamily:Metalloproteases ("zincins"), catalytic domain
Family:Matrix metalloproteases, catalytic domain
79c3cqbB_
not modelled 10.1 27
PDB header:hydrolase
Chain: B: PDB Molecule:probable protease htpx homolog;
PDBTitle: crystal structure of heat shock protein htpx domain from vibrio2 parahaemolyticus rimd 2210633
80d1bqqm_
not modelled 10.0 45
Fold:Zincin-like
Superfamily:Metalloproteases ("zincins"), catalytic domain
Family:Matrix metalloproteases, catalytic domain
81c2x7mA_
not modelled 9.6 43
PDB header:hydrolase
Chain: A: PDB Molecule:archaemetzincin;
PDBTitle: crystal structure of archaemetzincin (amza) from methanopyrus2 kandleri at 1.5 a resolution
82c3uinD_
not modelled 9.6 40
PDB header:ligase/isomerase/protein binding
Chain: D: PDB Molecule:e3 sumo-protein ligase ranbp2;
PDBTitle: complex between human rangap1-sumo2, ubc9 and the ir1 domain from2 ranbp2
83d1rm8a_
not modelled 9.5 45
Fold:Zincin-like
Superfamily:Metalloproteases ("zincins"), catalytic domain
Family:Matrix metalloproteases, catalytic domain
84d2k5wa1
not modelled 9.4 22
Fold:OB-fold
Superfamily:BC4932-like
Family:BC4932-like
85c1zv8B_
not modelled 9.4 33
PDB header:viral protein
Chain: B: PDB Molecule:e2 glycoprotein;
PDBTitle: a structure-based mechanism of sars virus membrane fusion
86d2ovxa1
not modelled 9.2 36
Fold:Zincin-like
Superfamily:Metalloproteases ("zincins"), catalytic domain
Family:Matrix metalloproteases, catalytic domain
87d1y93a1
not modelled 9.1 45
Fold:Zincin-like
Superfamily:Metalloproteases ("zincins"), catalytic domain
Family:Matrix metalloproteases, catalytic domain
88c4jztA_
not modelled 8.9 19
PDB header:hydrolase
Chain: A: PDB Molecule:dgtp pyrophosphohydrolase;
PDBTitle: crystal structure of the bacillus subtilis pyrophosphohydrolase bsrpph2 (e68a mutant) bound to gtp
89c5j10A_
not modelled 8.9 32
PDB header:de novo protein
Chain: A: PDB Molecule:peptide design 2l4hc2_24;
PDBTitle: de novo design of protein homo-oligomers with modular hydrogen bond2 network-mediated specificity
90c3nppA_
not modelled 8.6 17
PDB header:structural genomics, unknown function
Chain: A: PDB Molecule:pfam duf1093 family protein;
PDBTitle: crystal structure of a pfam duf1093 family protein (bsu39620) from2 bacillus subtilis at 2.15 a resolution
91d1s1ga_
not modelled 8.6 14
Fold:POZ domain
Superfamily:POZ domain
Family:Tetramerization domain of potassium channels
92c5a15A_
not modelled 8.6 20
PDB header:signaling protein
Chain: A: PDB Molecule:btb/poz domain-containing protein kctd16;
PDBTitle: crystal structure of the btb domain of human kctd16
93c2wd6B_
not modelled 8.4 21
PDB header:cell adhesion
Chain: B: PDB Molecule:agglutinin receptor;
PDBTitle: crystal structure of the variable domain of the streptococcus gordonii2 surface protein sspb
94d1wj6a_
not modelled 8.2 27
Fold:beta-Grasp (ubiquitin-like)
Superfamily:CAD & PB1 domains
Family:PB1 domain
95d1hnra_
not modelled 8.2 15
Fold:H-NS histone-like proteins
Superfamily:H-NS histone-like proteins
Family:H-NS histone-like proteins
96c1o7dA_
not modelled 8.0 83
PDB header:hydrolase
Chain: A: PDB Molecule:lysosomal alpha-mannosidase;
PDBTitle: the structure of the bovine lysosomal a-mannosidase suggests a novel2 mechanism for low ph activation
97d1eaka2
not modelled 8.0 36
Fold:Zincin-like
Superfamily:Metalloproteases ("zincins"), catalytic domain
Family:Matrix metalloproteases, catalytic domain
98c2jsdA_
not modelled 7.9 45
PDB header:hydrolase
Chain: A: PDB Molecule:matrix metalloproteinase-20;
PDBTitle: solution structure of mmp20 complexed with nngh
99c2mlwA_
not modelled 7.9 30
PDB header:toxin
Chain: A: PDB Molecule:type-1ba cytolytic delta-endotoxin;
PDBTitle: new cyt-like delta-endotoxins from dickeya dadantii - cytc protein

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