Phyre Home Retrieve Phyre Job Id
Emailmdejesus@rockefeller.edu
DescriptionRVBD0431_(-)_519076_519570
DateTue Jul 23 14:50:50 BST 2019
Unique Job ID46b98d032c40efd5
SequenceVLVTVGSMNE ... Download FASTA
Job Typenormal
Job Expiry

Summary 

Top model
Image coloured by rainbow N → C terminus
Model dimensions (Å):X:45.501 Y:84.599 Z:106.061
Model (left) based on template c2m5yA_
Top template information
PDB header:unknown function
Chain: A: PDB Molecule:putative tuberculin related peptide;
PDBTitle: solution structure of the c-terminal domain of rv0431
Confidence and coverage
Confidence:100.0% Coverage: 74%
122 residues ( 74% of your sequence) have been modelled with 100.0% confidence by the single highest scoring template.
You may wish to submit your sequence to Phyrealarm. This will automatically scan your sequence every week for new potential templates as they appear in the Phyre2 library.
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Sequence analysis 

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Secondary structure and disorder prediction [Show] 

Domain analysis [Show] 

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#
Template Alignment Coverage3D Model Confidence
% i.d. Template Information
1c2m5yA_
100.0 100
PDB header:unknown function
Chain: A: PDB Molecule:putative tuberculin related peptide;
PDBTitle: solution structure of the c-terminal domain of rv0431
2c6f0kA_
31.3 7
PDB header:membrane protein
Chain: A: PDB Molecule:cytochrome c family protein;
PDBTitle: alternative complex iii
3c3j1rO_
31.0 17
PDB header:cell adhesion, structural protein
Chain: O: PDB Molecule:archaeal adhesion filament core;
PDBTitle: filaments from ignicoccus hospitalis show diversity of packing in2 proteins containing n-terminal type iv pilin helices
4c3j1rP_
31.0 17
PDB header:cell adhesion, structural protein
Chain: P: PDB Molecule:archaeal adhesion filament core;
PDBTitle: filaments from ignicoccus hospitalis show diversity of packing in2 proteins containing n-terminal type iv pilin helices
5c3j1rQ_
31.0 17
PDB header:cell adhesion, structural protein
Chain: Q: PDB Molecule:archaeal adhesion filament core;
PDBTitle: filaments from ignicoccus hospitalis show diversity of packing in2 proteins containing n-terminal type iv pilin helices
6c3j1rR_
31.0 17
PDB header:cell adhesion, structural protein
Chain: R: PDB Molecule:archaeal adhesion filament core;
PDBTitle: filaments from ignicoccus hospitalis show diversity of packing in2 proteins containing n-terminal type iv pilin helices
7c3j1rT_
31.0 17
PDB header:cell adhesion, structural protein
Chain: T: PDB Molecule:archaeal adhesion filament core;
PDBTitle: filaments from ignicoccus hospitalis show diversity of packing in2 proteins containing n-terminal type iv pilin helices
8c3j1rN_
31.0 17
PDB header:cell adhesion, structural protein
Chain: N: PDB Molecule:archaeal adhesion filament core;
PDBTitle: filaments from ignicoccus hospitalis show diversity of packing in2 proteins containing n-terminal type iv pilin helices
9c3j1rE_
31.0 17
PDB header:cell adhesion, structural protein
Chain: E: PDB Molecule:archaeal adhesion filament core;
PDBTitle: filaments from ignicoccus hospitalis show diversity of packing in2 proteins containing n-terminal type iv pilin helices
10c3j1rG_
31.0 17
PDB header:cell adhesion, structural protein
Chain: G: PDB Molecule:archaeal adhesion filament core;
PDBTitle: filaments from ignicoccus hospitalis show diversity of packing in2 proteins containing n-terminal type iv pilin helices
11c3j1rH_
31.0 17
PDB header:cell adhesion, structural protein
Chain: H: PDB Molecule:archaeal adhesion filament core;
PDBTitle: filaments from ignicoccus hospitalis show diversity of packing in2 proteins containing n-terminal type iv pilin helices
12c3j1rF_
31.0 17
PDB header:cell adhesion, structural protein
Chain: F: PDB Molecule:archaeal adhesion filament core;
PDBTitle: filaments from ignicoccus hospitalis show diversity of packing in2 proteins containing n-terminal type iv pilin helices
13c3j1rI_
31.0 17
PDB header:cell adhesion, structural protein
Chain: I: PDB Molecule:archaeal adhesion filament core;
PDBTitle: filaments from ignicoccus hospitalis show diversity of packing in2 proteins containing n-terminal type iv pilin helices
14c3j1rM_
31.0 17
PDB header:cell adhesion, structural protein
Chain: M: PDB Molecule:archaeal adhesion filament core;
PDBTitle: filaments from ignicoccus hospitalis show diversity of packing in2 proteins containing n-terminal type iv pilin helices
15c3j1rC_
31.0 17
PDB header:cell adhesion, structural protein
Chain: C: PDB Molecule:archaeal adhesion filament core;
PDBTitle: filaments from ignicoccus hospitalis show diversity of packing in2 proteins containing n-terminal type iv pilin helices
16c3j1rA_
31.0 17
PDB header:cell adhesion, structural protein
Chain: A: PDB Molecule:archaeal adhesion filament core;
PDBTitle: filaments from ignicoccus hospitalis show diversity of packing in2 proteins containing n-terminal type iv pilin helices
17c3j1rB_
31.0 17
PDB header:cell adhesion, structural protein
Chain: B: PDB Molecule:archaeal adhesion filament core;
PDBTitle: filaments from ignicoccus hospitalis show diversity of packing in2 proteins containing n-terminal type iv pilin helices
18c3j1rS_
31.0 17
PDB header:cell adhesion, structural protein
Chain: S: PDB Molecule:archaeal adhesion filament core;
PDBTitle: filaments from ignicoccus hospitalis show diversity of packing in2 proteins containing n-terminal type iv pilin helices
19c3j1rL_
31.0 17
PDB header:cell adhesion, structural protein
Chain: L: PDB Molecule:archaeal adhesion filament core;
PDBTitle: filaments from ignicoccus hospitalis show diversity of packing in2 proteins containing n-terminal type iv pilin helices
20c3j1rD_
31.0 17
PDB header:cell adhesion, structural protein
Chain: D: PDB Molecule:archaeal adhesion filament core;
PDBTitle: filaments from ignicoccus hospitalis show diversity of packing in2 proteins containing n-terminal type iv pilin helices
21c3j1rK_
not modelled 31.0 17
PDB header:cell adhesion, structural protein
Chain: K: PDB Molecule:archaeal adhesion filament core;
PDBTitle: filaments from ignicoccus hospitalis show diversity of packing in2 proteins containing n-terminal type iv pilin helices
22c3j1rU_
not modelled 31.0 17
PDB header:cell adhesion, structural protein
Chain: U: PDB Molecule:archaeal adhesion filament core;
PDBTitle: filaments from ignicoccus hospitalis show diversity of packing in2 proteins containing n-terminal type iv pilin helices
23c3j1rJ_
not modelled 31.0 17
PDB header:cell adhesion, structural protein
Chain: J: PDB Molecule:archaeal adhesion filament core;
PDBTitle: filaments from ignicoccus hospitalis show diversity of packing in2 proteins containing n-terminal type iv pilin helices
24c2mniA_
not modelled 29.9 47
PDB header:unknown function
Chain: A: PDB Molecule:hp_q4d059;
PDBTitle: chemical shift assignments and structure of q4d059, a hypothetical2 protein from trypanosoma cruzi
25d2axth1
not modelled 25.9 25
Fold:Single transmembrane helix
Superfamily:Photosystem II 10 kDa phosphoprotein PsbH
Family:PsbH-like
26c2axtH_
not modelled 25.9 25
PDB header:electron transport
Chain: H: PDB Molecule:photosystem ii reaction center h protein;
PDBTitle: crystal structure of photosystem ii from thermosynechococcus elongatus
27d1xjca_
not modelled 22.4 20
Fold:P-loop containing nucleoside triphosphate hydrolases
Superfamily:P-loop containing nucleoside triphosphate hydrolases
Family:Nitrogenase iron protein-like
28c4lfmA_
not modelled 20.8 17
PDB header:isomerase
Chain: A: PDB Molecule:galactose-6-phosphate isomerase subunit a;
PDBTitle: crystal structure of d-galactose-6-phosphate isomerase in complex with2 d-psicose
29c2hkoA_
not modelled 19.9 33
PDB header:oxidoreductase
Chain: A: PDB Molecule:lysine-specific histone demethylase 1;
PDBTitle: crystal structure of lsd1
30d2dw4a2
not modelled 18.9 31
Fold:FAD/NAD(P)-binding domain
Superfamily:FAD/NAD(P)-binding domain
Family:FAD-linked reductases, N-terminal domain
31d2e74f1
not modelled 18.5 29
Fold:Single transmembrane helix
Superfamily:PetM subunit of the cytochrome b6f complex
Family:PetM subunit of the cytochrome b6f complex
32c2x2oA_
not modelled 18.2 15
PDB header:flavoprotein
Chain: A: PDB Molecule:nrdi protein;
PDBTitle: the flavoprotein nrdi from bacillus cereus with the initially oxidized2 fmn cofactor in an intermediate radiation reduced state
33d2fzva1
not modelled 17.9 13
Fold:Flavodoxin-like
Superfamily:Flavoproteins
Family:NADPH-dependent FMN reductase
34c4gutA_
not modelled 16.4 20
PDB header:oxidoreductase
Chain: A: PDB Molecule:lysine-specific histone demethylase 1b;
PDBTitle: crystal structure of lsd2-npac
35c3d1lB_
not modelled 15.1 24
PDB header:oxidoreductase
Chain: B: PDB Molecule:putative nadp oxidoreductase bf3122;
PDBTitle: crystal structure of putative nadp oxidoreductase bf3122 from2 bacteroides fragilis
36d1t70a_
not modelled 14.7 29
Fold:Metallo-dependent phosphatases
Superfamily:Metallo-dependent phosphatases
Family:DR1281-like
37c4nkrB_
not modelled 13.6 16
PDB header:unknown function
Chain: B: PDB Molecule:molybdopterin-guanine dinucleotide biosynthesis protein b;
PDBTitle: the crystal structure of bacillus subtilis mobb
38c2xagA_
not modelled 12.4 33
PDB header:transcription
Chain: A: PDB Molecule:lysine-specific histone demethylase 1;
PDBTitle: crystal structure of lsd1-corest in complex with para-bromo-2 (-)-trans-2-phenylcyclopropyl-1-amine
39c2v1dA_
not modelled 12.4 33
PDB header:oxidoreductase/repressor
Chain: A: PDB Molecule:lysine-specific histone demethylase 1;
PDBTitle: structural basis of lsd1-corest selectivity in histone h32 recognition
40c6navI_
not modelled 12.0 18
PDB header:structural protein
Chain: I: PDB Molecule:m9ud72;
PDBTitle: cryo-em reconstruction of sulfolobus islandicus lal14/1 pilus
41c3a9lB_
not modelled 11.4 7
PDB header:hydrolase
Chain: B: PDB Molecule:poly-gamma-glutamate hydrolase;
PDBTitle: structure of bacteriophage poly-gamma-glutamate hydrolase
42c6gcsW_
not modelled 10.9 18
PDB header:oxidoreductase
Chain: W: PDB Molecule:nb6m subunit;
PDBTitle: cryo-em structure of respiratory complex i from yarrowia lipolytica
43d2z06a1
not modelled 10.6 29
Fold:Metallo-dependent phosphatases
Superfamily:Metallo-dependent phosphatases
Family:TTHA0625-like
44d1yt8a4
not modelled 10.1 22
Fold:Rhodanese/Cell cycle control phosphatase
Superfamily:Rhodanese/Cell cycle control phosphatase
Family:Multidomain sulfurtransferase (rhodanese)
45d1nyra1
not modelled 10.1 22
Fold:Anticodon-binding domain-like
Superfamily:Class II aaRS ABD-related
Family:Anticodon-binding domain of Class II aaRS
46d1rlja_
not modelled 9.8 10
Fold:Flavodoxin-like
Superfamily:Flavoproteins
Family:Flavoprotein NrdI
47d2fgca2
not modelled 9.6 13
Fold:Ferredoxin-like
Superfamily:ACT-like
Family:IlvH-like
48c5lnkq_
not modelled 9.2 21
PDB header:oxidoreductase
Chain: Q: PDB Molecule:
PDBTitle: entire ovine respiratory complex i
49c4b2oB_
not modelled 9.2 21
PDB header:hydrolase
Chain: B: PDB Molecule:ymdb phosphodiesterase;
PDBTitle: crystal structure of bacillus subtilis ymdb, a global2 regulator of late adaptive responses.
50c6et5b_
not modelled 9.1 25
PDB header:photosynthesis
Chain: B: PDB Molecule:
PDBTitle: reaction centre light harvesting complex 1 from blc. virids
51d1t71a_
not modelled 8.6 29
Fold:Metallo-dependent phosphatases
Superfamily:Metallo-dependent phosphatases
Family:DR1281-like
52c5mjiA_
not modelled 8.6 13
PDB header:flavoprotein
Chain: A: PDB Molecule:bramp domain protein;
PDBTitle: crystal structure of rosb with bound intermediate ohc-rp (8-demethyl-2 8-formylriboflavin-5'-phosphate)
53d2pc6a2
not modelled 8.6 17
Fold:Ferredoxin-like
Superfamily:ACT-like
Family:IlvH-like
54c4v0pA_
not modelled 8.2 12
PDB header:immune system
Chain: A: PDB Molecule:melanoma-associated antigen 3;
PDBTitle: crystal structure of the mage homology domain of human mage-a3
55c4onyB_
not modelled 8.1 30
PDB header:transport protein
Chain: B: PDB Molecule:extracellular solute-binding protein family 5;
PDBTitle: crystal structure of a abc transporter, periplasmic substrate-binding2 protein from brucella melitensis
56c1gqqA_
not modelled 8.1 19
PDB header:cell wall biosynthesis
Chain: A: PDB Molecule:udp-n-acetylmuramate-l-alanine ligase;
PDBTitle: murc - crystal structure of the apo-enzyme from haemophilus influenzae
57c1wv9B_
not modelled 7.8 17
PDB header:structural genomics, unknown function
Chain: B: PDB Molecule:rhodanese homolog tt1651;
PDBTitle: crystal structure of rhodanese homolog tt1651 from an2 extremely thermophilic bacterium thermus thermophilus hb8
58c4alnE_
not modelled 7.7 16
PDB header:oxidoreductase
Chain: E: PDB Molecule:enoyl-[acyl-carrier-protein] reductase [nadph];
PDBTitle: crystal structure of s. aureus fabi (p32)
59c2vvlD_
not modelled 7.5 15
PDB header:oxidoreductase
Chain: D: PDB Molecule:monoamine oxidase n;
PDBTitle: the structure of mao-n-d3, a variant of monoamine oxidase2 from aspergillus niger.
60d2f1fa1
not modelled 7.5 13
Fold:Ferredoxin-like
Superfamily:ACT-like
Family:IlvH-like
61c6fxsA_
not modelled 7.4 18
PDB header:isomerase
Chain: A: PDB Molecule:ribose 5-phosphate isomerase, putative;
PDBTitle: structure of trypanosoma brucei type b ribose 5-phosphate isomerase
62d1m0da_
not modelled 7.0 15
Fold:Restriction endonuclease-like
Superfamily:Restriction endonuclease-like
Family:Endonuclease I (Holliday junction resolvase)
63c4em8A_
not modelled 6.9 26
PDB header:isomerase
Chain: A: PDB Molecule:ribose 5-phosphate isomerase b;
PDBTitle: the structure of ribose 5-phosphate isomerase b from anaplasma2 phagocytophilum
64c1ps9A_
not modelled 6.5 29
PDB header:oxidoreductase
Chain: A: PDB Molecule:2,4-dienoyl-coa reductase;
PDBTitle: the crystal structure and reaction mechanism of e. coli 2,4-dienoyl2 coa reductase
65d1xrda1
not modelled 6.4 33
Fold:Light-harvesting complex subunits
Superfamily:Light-harvesting complex subunits
Family:Light-harvesting complex subunits
66c1xrdA_
not modelled 6.4 33
PDB header:membrane protein
Chain: A: PDB Molecule:light-harvesting protein b-880, alpha chain;
PDBTitle: light-harvesting complex 1 alfa subunit from wild-type2 rhodospirillum rubrum
67d1qf6a1
not modelled 6.3 21
Fold:Anticodon-binding domain-like
Superfamily:Class II aaRS ABD-related
Family:Anticodon-binding domain of Class II aaRS
68c2f1rA_
not modelled 6.2 24
PDB header:biosynthetic protein
Chain: A: PDB Molecule:molybdopterin-guanine dinucleotide biosynthesis
PDBTitle: crystal structure of molybdopterin-guanine biosynthesis2 protein b (mobb)
69c3wmmY_
not modelled 6.0 30
PDB header:photosynthesis
Chain: Y: PDB Molecule:lh1 alpha polypeptide;
PDBTitle: crystal structure of the lh1-rc complex from thermochromatium tepidum2 in c2 form
70d1dwka1
not modelled 5.9 17
Fold:lambda repressor-like DNA-binding domains
Superfamily:lambda repressor-like DNA-binding domains
Family:Cyanase N-terminal domain
71c5onkA_
not modelled 5.9 23
PDB header:hydrolase
Chain: A: PDB Molecule:yndl;
PDBTitle: native yndl
72c3k7pA_
not modelled 5.8 23
PDB header:isomerase
Chain: A: PDB Molecule:ribose 5-phosphate isomerase;
PDBTitle: structure of mutant of ribose 5-phosphate isomerase type b from2 trypanosoma cruzi.
73c6hwhB_
not modelled 5.8 13
PDB header:electron transport
Chain: B: PDB Molecule:ubiquinol-cytochrome c reductase iron-sulfur subunit;
PDBTitle: structure of a functional obligate respiratory supercomplex from2 mycobacterium smegmatis
74c3m1pA_
not modelled 5.7 23
PDB header:isomerase
Chain: A: PDB Molecule:ribose 5-phosphate isomerase;
PDBTitle: structure of ribose 5-phosphate isomerase type b from trypanosoma2 cruzi, soaked with allose-6-phosphate
75d1szpa1
not modelled 5.5 14
Fold:SAM domain-like
Superfamily:Rad51 N-terminal domain-like
Family:DNA repair protein Rad51, N-terminal domain
76c2kvcA_
not modelled 5.3 41
PDB header:unknown function
Chain: A: PDB Molecule:putative uncharacterized protein;
PDBTitle: solution structure of the mycobacterium tuberculosis protein rv0543c,2 a member of the duf3349 superfamily. seattle structural genomics3 center for infectious disease target mytud.17112.a

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Transmembrane helix prediction 

Transmembrane helices have been predicted in your sequence to adopt the topology shown below