Phyre Home Retrieve Phyre Job Id
Emailmdejesus@rockefeller.edu
DescriptionRVBD0432_(sodC)_519603_520325
DateTue Jul 23 14:50:50 BST 2019
Unique Job IDf4bd993744dbea46
SequenceMPKPADHRNH ... Download FASTA
Job Typenormal
Job Expiry

Summary 

Top model
Image coloured by rainbow N → C terminus
Model dimensions (Å):X:54.845 Y:58.035 Z:98.600
Model (left) based on template c6adqZ_
Top template information
PDB header:electron transport
Chain: Z: PDB Molecule:superoxide dismutase [cu-zn];
PDBTitle: respiratory complex ciii2civ2sod2 from mycobacterium smegmatis
Confidence and coverage
Confidence:100.0% Coverage: 87%
208 residues ( 87% of your sequence) have been modelled with 100.0% confidence by the single highest scoring template.
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Sequence analysis 

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Domain analysis [Show] 

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Template Alignment Coverage3D Model Confidence
% i.d. Template Information
1c6adqZ_



100.0 71
PDB header:electron transport
Chain: Z: PDB Molecule:superoxide dismutase [cu-zn];
PDBTitle: respiratory complex ciii2civ2sod2 from mycobacterium smegmatis
2d1pzsa_



100.0 93
Fold:Immunoglobulin-like beta-sandwich
Superfamily:Cu,Zn superoxide dismutase-like
Family:Cu,Zn superoxide dismutase-like
3c1pzsA_



100.0 93
PDB header:oxidoreductase, metal binding protein
Chain: A: PDB Molecule:superoxide dismutase [cu-zn];
PDBTitle: crystal structure of a cu-zn superoxide dismutase from mycobacterium2 tuberculosis at 1.63 resolution
4c6dtkA_



100.0 29
PDB header:oxidoreductase
Chain: A: PDB Molecule:superoxide dismutase c111s/d83s-c111s heterodimer;
PDBTitle: heterodimers of fals mutant sod enzyme
5c6fp6X_



100.0 26
PDB header:metal binding protein
Chain: X: PDB Molecule:copper chaperone for superoxide dismutase;
PDBTitle: complex of human cu,zn sod1 with the human copper chaperone for sod12 in a compact conformation
6d1q0ea_



100.0 30
Fold:Immunoglobulin-like beta-sandwich
Superfamily:Cu,Zn superoxide dismutase-like
Family:Cu,Zn superoxide dismutase-like
7c5in2A_



100.0 35
PDB header:oxidoreductase
Chain: A: PDB Molecule:extracellular superoxide dismutase [cu-zn];
PDBTitle: crystal structure of extra cellular cu/zn superoxide dismutase from2 onchocerca volvulus at 1.5 angstrom; insight into novel binding site3 and new inhibitors
8d1srda_



100.0 26
Fold:Immunoglobulin-like beta-sandwich
Superfamily:Cu,Zn superoxide dismutase-like
Family:Cu,Zn superoxide dismutase-like
9c3f7lA_



100.0 30
PDB header:oxidoreductase
Chain: A: PDB Molecule:copper,zinc superoxide dismutase;
PDBTitle: x-ray crystal structure of alvinella pompejana cu,zn2 superoxide dismutase
10d2c9va1



100.0 32
Fold:Immunoglobulin-like beta-sandwich
Superfamily:Cu,Zn superoxide dismutase-like
Family:Cu,Zn superoxide dismutase-like
11c2aqmA_



100.0 30
PDB header:oxidoreductase
Chain: A: PDB Molecule:superoxide dismutase [cu-zn];
PDBTitle: cu/zn superoxide dismutase from brucella abortus
12c1s4iC_



100.0 26
PDB header:oxidoreductase
Chain: C: PDB Molecule:superoxide dismutase-like protein yojm;
PDBTitle: crystal structure of a sod-like protein from bacillus subtilis
13d1do5a_



100.0 31
Fold:Immunoglobulin-like beta-sandwich
Superfamily:Cu,Zn superoxide dismutase-like
Family:Cu,Zn superoxide dismutase-like
14c2q2lB_



100.0 30
PDB header:oxidoreductase
Chain: B: PDB Molecule:superoxide dismutase;
PDBTitle: crystal structure of superoxide dismutase from p.2 atrosanguina
15d1eqwa_



100.0 28
Fold:Immunoglobulin-like beta-sandwich
Superfamily:Cu,Zn superoxide dismutase-like
Family:Cu,Zn superoxide dismutase-like
16d1esoa_



100.0 29
Fold:Immunoglobulin-like beta-sandwich
Superfamily:Cu,Zn superoxide dismutase-like
Family:Cu,Zn superoxide dismutase-like
17d1to4a_



100.0 26
Fold:Immunoglobulin-like beta-sandwich
Superfamily:Cu,Zn superoxide dismutase-like
Family:Cu,Zn superoxide dismutase-like
18d1oala_



100.0 34
Fold:Immunoglobulin-like beta-sandwich
Superfamily:Cu,Zn superoxide dismutase-like
Family:Cu,Zn superoxide dismutase-like
19c2jlpA_



100.0 26
PDB header:oxidoreductase
Chain: A: PDB Molecule:extracellular superoxide dismutase (cu-zn);
PDBTitle: crystal structure of human extracellular copper-zinc superoxide2 dismutase.
20c2e47A_



100.0 27
PDB header:metal binding protein
Chain: A: PDB Molecule:time interval measuring enzyme time;
PDBTitle: crystal structure analysis of the clock protein ea4 (glycosylation2 form)
21c3ce1A_



not modelled 100.0 29
PDB header:oxidoreductase
Chain: A: PDB Molecule:superoxide dismutase [cu-zn];
PDBTitle: crystal structure of the cu/zn superoxide dismutase from cryptococcus2 liquefaciens strain n6
22d1xsoa_



not modelled 100.0 29
Fold:Immunoglobulin-like beta-sandwich
Superfamily:Cu,Zn superoxide dismutase-like
Family:Cu,Zn superoxide dismutase-like
23c3l9eC_



not modelled 100.0 27
PDB header:oxidoreductase
Chain: C: PDB Molecule:superoxide dismutase [cu-zn];
PDBTitle: crystal structures of holo and cu-deficient cu/znsod from the silkworm2 bombyx mori and the implications in amyotrophic lateral sclerosis
24c4ojaA_



not modelled 100.0 33
PDB header:oxidoreductase
Chain: A: PDB Molecule:superoxide dismutase [cu-zn];
PDBTitle: structure of hydra cu-zn superoxide dismutase
25d2apsa_



not modelled 100.0 32
Fold:Immunoglobulin-like beta-sandwich
Superfamily:Cu,Zn superoxide dismutase-like
Family:Cu,Zn superoxide dismutase-like
26d1f1ga_



not modelled 100.0 29
Fold:Immunoglobulin-like beta-sandwich
Superfamily:Cu,Zn superoxide dismutase-like
Family:Cu,Zn superoxide dismutase-like
27d1ej8a_



not modelled 100.0 17
Fold:Immunoglobulin-like beta-sandwich
Superfamily:Cu,Zn superoxide dismutase-like
Family:Cu,Zn superoxide dismutase-like
28c3kbeA_



not modelled 100.0 35
PDB header:oxidoreductase
Chain: A: PDB Molecule:superoxide dismutase [cu-zn];
PDBTitle: metal-free c. elegans cu,zn superoxide dismutase
29c3hogA_



not modelled 100.0 27
PDB header:oxidoreductase
Chain: A: PDB Molecule:superoxide dismutase [cu-zn], chloroplastic;
PDBTitle: metal-free tomato chloroplast superoxide dismutase
30c4n3uA_



not modelled 100.0 20
PDB header:oxidoreductase
Chain: A: PDB Molecule:potential secreted cu/zn superoxide dismutase;
PDBTitle: candida albicans superoxide dismutase 5 (sod5), cu(ii)
31c1jk9D_



not modelled 100.0 18
PDB header:oxidoreductase
Chain: D: PDB Molecule:copper chaperone for superoxide dismutase;
PDBTitle: heterodimer between h48f-ysod1 and yccs
32d1jk9b1



not modelled 100.0 20
Fold:Immunoglobulin-like beta-sandwich
Superfamily:Cu,Zn superoxide dismutase-like
Family:Cu,Zn superoxide dismutase-like
33c1qupA_



not modelled 100.0 19
PDB header:chaperone
Chain: A: PDB Molecule:superoxide dismutase 1 copper chaperone;
PDBTitle: crystal structure of the copper chaperone for superoxide dismutase
34c4u4iA_



not modelled 100.0 28
PDB header:oxidoreductase
Chain: A: PDB Molecule:cu/zn superoxide dismutase;
PDBTitle: megavirus chilensis superoxide dismutase
35c5j0cB_



not modelled 99.9 42
PDB header:oxidoreductase
Chain: B: PDB Molecule:superoxide dismutase [cu-zn],superoxide dismutase [cu-zn],
PDBTitle: monomeric human cu,zn superoxide dismutase, loops iv and vii deleted,2 apo form, circular permutant p2/3
36c4bd4H_



not modelled 99.9 34
PDB header:oxidoreductase
Chain: H: PDB Molecule:superoxide dismutase [cu-zn];
PDBTitle: monomeric human cu,zn superoxide dismutase, loops iv and vii deleted,2 apo form, mutant h43f
37c5j0fA_



not modelled 99.7 31
PDB header:oxidoreductase
Chain: A: PDB Molecule:superoxide dismutase [cu-zn],oxidoreductase,superoxide
PDBTitle: monomeric human cu,zn superoxide dismutase, loops iv and vii deleted,2 apo form, circular permutant p4/5
38c5icuA_



not modelled 70.8 11
PDB header:chaperone
Chain: A: PDB Molecule:copc;
PDBTitle: the crystal structure of copc from methylosinus trichosporium ob3b
39c1z8rA_



not modelled 42.0 32
PDB header:hydrolase
Chain: A: PDB Molecule:coxsackievirus b4 polyprotein;
PDBTitle: 2a cysteine proteinase from human coxsackievirus b4 (strain2 jvb / benschoten / new york / 51)
40c2m5tA_



not modelled 37.1 39
PDB header:viral protein
Chain: A: PDB Molecule:human rhinovirus 2a proteinase;
PDBTitle: solution structure of the 2a proteinase from a common cold agent,2 human rhinovirus rv-c02, strain w12
41c1naeA_



not modelled 32.0 19
PDB header:hydrolase
Chain: A: PDB Molecule:putative xylanase;
PDBTitle: structure of cscbm6-3 from clostridium stercorarium in2 complex with xylotriose
42d2hrva_



not modelled 28.4 29
Fold:Trypsin-like serine proteases
Superfamily:Trypsin-like serine proteases
Family:Viral cysteine protease of trypsin fold
43d1uy4a_



not modelled 25.6 20
Fold:Galactose-binding domain-like
Superfamily:Galactose-binding domain-like
Family:Family 6 carbohydrate binding module, CBM6
44c2xr4A_



not modelled 24.3 17
PDB header:sugar binding protein
Chain: A: PDB Molecule:lectin;
PDBTitle: c-terminal domain of bc2l-c lectin from burkholderia cenocepacia
45c3osvC_



not modelled 19.8 15
PDB header:structural protein
Chain: C: PDB Molecule:flagellar basal-body rod modification protein flgd;
PDBTitle: the crytsal structure of flgd from p. aeruginosa
46d1gska3



not modelled 18.0 21
Fold:Cupredoxin-like
Superfamily:Cupredoxins
Family:Multidomain cupredoxins
47c2vnvC_



not modelled 16.7 14
PDB header:sugar-binding protein
Chain: C: PDB Molecule:bcla;
PDBTitle: crystal structure of bcla lectin from burkholderia2 cenocepacia in complex with alpha-methyl-mannoside at 1.73 angstrom resolution
48d1od3a_



not modelled 16.2 21
Fold:Galactose-binding domain-like
Superfamily:Galactose-binding domain-like
Family:Family 6 carbohydrate binding module, CBM6
49d2e9ia1



not modelled 15.8 19
Fold:Immunoglobulin-like beta-sandwich
Superfamily:E set domains
Family:Filamin repeat (rod domain)
50d1w9sa_



not modelled 14.8 19
Fold:Galactose-binding domain-like
Superfamily:Galactose-binding domain-like
Family:Family 6 carbohydrate binding module, CBM6
51c2k7pA_



not modelled 14.0 22
PDB header:structural protein
Chain: A: PDB Molecule:filamin-a;
PDBTitle: filamin a ig-like domains 16-17
52d2diba1



not modelled 13.1 16
Fold:Immunoglobulin-like beta-sandwich
Superfamily:E set domains
Family:Filamin repeat (rod domain)
53d1ibya_



not modelled 12.5 21
Fold:Cupredoxin-like
Superfamily:Cupredoxins
Family:Nitrosocyanin
54d1gyca3



not modelled 11.7 17
Fold:Cupredoxin-like
Superfamily:Cupredoxins
Family:Multidomain cupredoxins
55d1uxxx_



not modelled 11.5 24
Fold:Galactose-binding domain-like
Superfamily:Galactose-binding domain-like
Family:Family 6 carbohydrate binding module, CBM6
56d1sddb2



not modelled 11.5 17
Fold:Cupredoxin-like
Superfamily:Cupredoxins
Family:Multidomain cupredoxins
57c2mqcA_



not modelled 10.6 6
PDB header:structural genomics, unknown function
Chain: A: PDB Molecule:uncharacterized protein;
PDBTitle: nmr structure of the protein bvu_0925 from bacteroides vulgatus atcc2 8482
58c2re3A_



not modelled 10.2 33
PDB header:unknown function
Chain: A: PDB Molecule:uncharacterized protein;
PDBTitle: crystal structure of a duf1285 family protein (spo_0140) from2 silicibacter pomeroyi dss-3 at 2.50 a resolution
59d1bcoa1



not modelled 10.2 9
Fold:mu transposase, C-terminal domain
Superfamily:mu transposase, C-terminal domain
Family:mu transposase, C-terminal domain
60c1zpuE_



not modelled 9.8 26
PDB header:oxidoreductase
Chain: E: PDB Molecule:iron transport multicopper oxidase fet3;
PDBTitle: crystal structure of fet3p, a multicopper oxidase that functions in2 iron import
61c3c12A_



not modelled 9.8 23
PDB header:biosynthetic protein
Chain: A: PDB Molecule:flagellar protein;
PDBTitle: crystal structure of flgd from xanthomonas campestris:2 insights into the hook capping essential for flagellar3 assembly
62d2d7na1



not modelled 9.7 22
Fold:Immunoglobulin-like beta-sandwich
Superfamily:E set domains
Family:Filamin repeat (rod domain)
63d1uxza_



not modelled 9.7 17
Fold:Galactose-binding domain-like
Superfamily:Galactose-binding domain-like
Family:Family 6 carbohydrate binding module, CBM6
64c3bvcA_



not modelled 9.5 24
PDB header:structural genomics, unknown function
Chain: A: PDB Molecule:uncharacterized protein ism_01780;
PDBTitle: crystal structure of uncharacterized protein ism_01780 from2 roseovarius nubinhibens ism
65d1e30a_



not modelled 9.2 30
Fold:Cupredoxin-like
Superfamily:Cupredoxins
Family:Plastocyanin/azurin-like
66c2kywA_



not modelled 9.1 21
PDB header:cell adhesion
Chain: A: PDB Molecule:adhesion exoprotein;
PDBTitle: solution nmr structure of a domain of adhesion exoprotein from2 pediococcus pentosaceus, northeast structural genomics consortium3 target ptr41o
67d2j5wa5



not modelled 8.6 26
Fold:Cupredoxin-like
Superfamily:Cupredoxins
Family:Multidomain cupredoxins
68d1kcwa2



not modelled 8.5 22
Fold:Cupredoxin-like
Superfamily:Cupredoxins
Family:Multidomain cupredoxins
69c6nfqC_



not modelled 8.0 16
PDB header:metal binding protein
Chain: C: PDB Molecule:copc;
PDBTitle: copc from pseudomonas fluorescens
70c2mtwA_



not modelled 7.2 60
PDB header:protein binding
Chain: A: PDB Molecule:erythrocyte-binding antigen 175;
PDBTitle: evidence supporting the hypothesis that specifically modifying a2 malaria peptide to fit into hla-dr 1*03 molecules induces antibody3 production and protection
71c2k3cA_



not modelled 7.1 50
PDB header:metal transport
Chain: A: PDB Molecule:tmix peptide;
PDBTitle: structural and functional characterization of tm ix of the2 nhe1 isoform of the na+/h+ exchanger
72d1fwxa1



not modelled 6.9 24
Fold:Cupredoxin-like
Superfamily:Cupredoxins
Family:Nitrosocyanin
73d2chha1



not modelled 6.8 9
Fold:Calcium-mediated lectin
Superfamily:Calcium-mediated lectin
Family:Calcium-mediated lectin
74c3tasC_



not modelled 6.5 19
PDB header:oxidoreductase
Chain: C: PDB Molecule:small laccase, multi-copper oxidase;
PDBTitle: small laccase from streptomyces viridosporus t7a
75c3biyA_



not modelled 6.5 40
PDB header:transferase
Chain: A: PDB Molecule:histone acetyltransferase p300;
PDBTitle: crystal structure of p300 histone acetyltransferase domain in complex2 with a bisubstrate inhibitor, lys-coa
76d2q9oa3



not modelled 6.5 16
Fold:Cupredoxin-like
Superfamily:Cupredoxins
Family:Multidomain cupredoxins
77c2f2bA_



not modelled 6.2 33
PDB header:membrane protein
Chain: A: PDB Molecule:aquaporin aqpm;
PDBTitle: crystal structure of integral membrane protein aquaporin aqpm at 1.68a2 resolution
78d1kyaa3



not modelled 6.2 19
Fold:Cupredoxin-like
Superfamily:Cupredoxins
Family:Multidomain cupredoxins
79c5hqhA_



not modelled 6.1 12
PDB header:unknown function
Chain: A: PDB Molecule:lmo2119 protein;
PDBTitle: 1.32 angstrom crystal structure of ybbr like domain of lmo2119 protein2 from listeria monocytogenes.
80c4p3wE_



not modelled 6.0 20
PDB header:cell adhesion
Chain: E: PDB Molecule:filamin-a;
PDBTitle: crystal structure of the human filamin a ig-like domains 20-21 in2 complex with migfilin peptide
81c3sbtB_



not modelled 6.0 29
PDB header:splicing
Chain: B: PDB Molecule:a1 cistron-splicing factor aar2;
PDBTitle: crystal structure of a aar2-prp8 complex
82c2boiA_



not modelled 6.0 22
PDB header:lectin
Chain: A: PDB Molecule:cv-iil lectin;
PDBTitle: 1.1a structure of chromobacterium violaceum lectin cv2l in2 complex with alpha-methyl-fucoside
83d1mzya2



not modelled 5.9 10
Fold:Cupredoxin-like
Superfamily:Cupredoxins
Family:Multidomain cupredoxins
84c5lwxA_



not modelled 5.8 21
PDB header:oxidoreductase
Chain: A: PDB Molecule:multicopper oxidase;
PDBTitle: crystal structure of the h253d mutant of mcog from aspergillus niger
85c5ewoA_



not modelled 5.7 19
PDB header:viral protein
Chain: A: PDB Molecule:structural protein;
PDBTitle: crystal structure of the human astrovirus 1 capsid protein spike2 domain at 0.95-a resolution
86d1g94a1



not modelled 5.7 36
Fold:Glycosyl hydrolase domain
Superfamily:Glycosyl hydrolase domain
Family:alpha-Amylases, C-terminal beta-sheet domain
87c4zzkA_



not modelled 5.6 13
PDB header:motor protein
Chain: A: PDB Molecule:basal-body rod modification protein flgd;
PDBTitle: crystal structure of truncated flgd (monoclinic form) from the human2 pathogen helicobacter pylori
88c6g2dC_



not modelled 5.6 25
PDB header:ligase
Chain: C: PDB Molecule:acetyl-coa carboxylase 1;
PDBTitle: citrate-induced acetyl-coa carboxylase (acc-cit) filament at 5.4 a2 resolution
89d1uzva_



not modelled 5.5 14
Fold:Calcium-mediated lectin
Superfamily:Calcium-mediated lectin
Family:Calcium-mediated lectin
90d1qhqa_



not modelled 5.5 9
Fold:Cupredoxin-like
Superfamily:Cupredoxins
Family:Plastocyanin/azurin-like
91d1kv7a3



not modelled 5.5 27
Fold:Cupredoxin-like
Superfamily:Cupredoxins
Family:Multidomain cupredoxins
92d1snra2



not modelled 5.4 15
Fold:Cupredoxin-like
Superfamily:Cupredoxins
Family:Multidomain cupredoxins
93d1h6ia_



not modelled 5.4 33
Fold:Aquaporin-like
Superfamily:Aquaporin-like
Family:Aquaporin-like
94d1mzya1



not modelled 5.4 13
Fold:Cupredoxin-like
Superfamily:Cupredoxins
Family:Multidomain cupredoxins
95d2ysca1



not modelled 5.2 60
Fold:WW domain-like
Superfamily:WW domain
Family:WW domain
96c2w2eA_



not modelled 5.2 33
PDB header:membrane protein
Chain: A: PDB Molecule:aquaporin pip2-7 7;
PDBTitle: 1.15 angstrom crystal structure of p.pastoris aquaporin, aqy1, in a2 closed conformation at ph 3.5
97c5i32A_



not modelled 5.2 50
PDB header:membrane protein
Chain: A: PDB Molecule:aquaporin tip2-1;
PDBTitle: ammonia permeable aquaporin attip2;1
98c1of0A_



not modelled 5.2 29
PDB header:oxidoreductase
Chain: A: PDB Molecule:spore coat protein a;
PDBTitle: crystal structure of bacillus subtilis cota after 1h soaking with abts
99c2j6gA_



not modelled 5.2 20
PDB header:cell adhesion
Chain: A: PDB Molecule:faeg;
PDBTitle: faeg from f4ac etec strain 5_95, produced in tobacco plant chloroplast

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Transmembrane helix prediction 

Transmembrane helices have been predicted in your sequence to adopt the topology shown below