Phyre Home Retrieve Phyre Job Id
Emailmdejesus@rockefeller.edu
DescriptionRVBD0434_(-)_521517_522170
DateTue Jul 23 14:50:51 BST 2019
Unique Job ID15cc1507f2319a26
SequenceMADFAPVELA ... Download FASTA
Job Typenormal
Job Expiry

Summary 

Top model
Image coloured by rainbow N → C terminus
Model dimensions (Å):X:50.827 Y:46.735 Z:64.985
Model (left) based on template c3m65A_
Top template information
PDB header:hydrolase
Chain: A: PDB Molecule:atp-dependent protease la 1;
PDBTitle: crystal structure of bacillus subtilis lon n-terminal domain
Confidence and coverage
Confidence:100.0% Coverage: 93%
202 residues ( 93% of your sequence) have been modelled with 100.0% confidence by the single highest scoring template.
3D viewing
Interactive 3D view in JSmol
For other options to view your downloaded structure offline see the FAQ

Sequence analysis 

Download FASTA version

Secondary structure and disorder prediction [Show] 

Domain analysis [Show] 

Detailed template information [Hide] 

 

#
Template Alignment Coverage3D Model Confidence
% i.d. Template Information
1c3m65A_



100.0 16
PDB header:hydrolase
Chain: A: PDB Molecule:atp-dependent protease la 1;
PDBTitle: crystal structure of bacillus subtilis lon n-terminal domain
2d1zboa1



100.0 24
Fold:PUA domain-like
Superfamily:PUA domain-like
Family:LON domain-like
3c3ljcA_



100.0 18
PDB header:hydrolase
Chain: A: PDB Molecule:atp-dependent protease la;
PDBTitle: crystal structure of lon n-terminal domain.
4d2anea1



99.9 19
Fold:PUA domain-like
Superfamily:PUA domain-like
Family:LON domain-like
5d1vcoa1



47.6 9
Fold:Flavodoxin-like
Superfamily:Class I glutamine amidotransferase-like
Family:Class I glutamine amidotransferases (GAT)
6c3l83A_



45.2 24
PDB header:transferase
Chain: A: PDB Molecule:glutamine amido transferase;
PDBTitle: crystal structure of glutamine amido transferase from methylobacillus2 flagellatus
7c1vcnA_



40.1 9
PDB header:ligase
Chain: A: PDB Molecule:ctp synthetase;
PDBTitle: crystal structure of t.th. hb8 ctp synthetase complex with sulfate2 anion
8c2w7tA_



38.8 17
PDB header:ligase
Chain: A: PDB Molecule:putative cytidine triphosphate synthase;
PDBTitle: trypanosoma brucei ctps - glutaminase domain with bound acivicin
9c3l7nA_



35.3 15
PDB header:transferase
Chain: A: PDB Molecule:putative uncharacterized protein;
PDBTitle: crystal structure of smu.1228c
10c1ci6B_



31.8 16
PDB header:transcription
Chain: B: PDB Molecule:transcription factor c/ebp beta;
PDBTitle: transcription factor atf4-c/ebp beta bzip heterodimer
11d2a9va1



31.3 11
Fold:Flavodoxin-like
Superfamily:Class I glutamine amidotransferase-like
Family:Class I glutamine amidotransferases (GAT)
12d1s1ma1



29.6 14
Fold:Flavodoxin-like
Superfamily:Class I glutamine amidotransferase-like
Family:Class I glutamine amidotransferases (GAT)
13c2ktlA_



24.9 8
PDB header:ligase
Chain: A: PDB Molecule:tyrosyl-trna synthetase;
PDBTitle: structure of c-terminal domain from mttyrrs of a. nidulans
14c2issF_



23.2 14
PDB header:lyase, transferase
Chain: F: PDB Molecule:glutamine amidotransferase subunit pdxt;
PDBTitle: structure of the plp synthase holoenzyme from thermotoga maritima
15c5ch1B_



22.0 27
PDB header:transferase
Chain: B: PDB Molecule:putative polycomb protein ezh2,putative polycomb protein
PDBTitle: crystal structure of an active polycomb repressive complex 2 in the2 stimulated state
16d1wl8a1



20.8 6
Fold:Flavodoxin-like
Superfamily:Class I glutamine amidotransferase-like
Family:Class I glutamine amidotransferases (GAT)
17c2nz7A_



20.7 21
PDB header:apoptosis
Chain: A: PDB Molecule:caspase recruitment domain-containing protein 4;
PDBTitle: crystal structure analysis of caspase-recruitment domain2 (card) of nod1
18d1jvna2



18.9 17
Fold:Flavodoxin-like
Superfamily:Class I glutamine amidotransferase-like
Family:Class I glutamine amidotransferases (GAT)
19d1p80a1



17.5 4
Fold:Flavodoxin-like
Superfamily:Class I glutamine amidotransferase-like
Family:Catalase, C-terminal domain
20d1k9vf_



16.8 14
Fold:Flavodoxin-like
Superfamily:Class I glutamine amidotransferase-like
Family:Class I glutamine amidotransferases (GAT)
21c6qurA_



not modelled 16.7 17
PDB header:transferase
Chain: A: PDB Molecule:glutaminase;
PDBTitle: mapping the allosteric communication network of aminodeoxychorismate2 synthase
22c2b1wA_



not modelled 16.7 20
PDB header:apoptosis
Chain: A: PDB Molecule:caspase recruitment domain protein 4;
PDBTitle: solution structure of the nod1 caspase activating and recruitment2 domain
23c4gudA_



not modelled 15.3 14
PDB header:transferase
Chain: A: PDB Molecule:imidazole glycerol phosphate synthase subunit hish;
PDBTitle: crystal structure of amidotransferase hish from vibrio cholerae
24d1ka9h_



not modelled 15.0 19
Fold:Flavodoxin-like
Superfamily:Class I glutamine amidotransferase-like
Family:Class I glutamine amidotransferases (GAT)
25c4l8fA_



not modelled 14.8 16
PDB header:hydrolase
Chain: A: PDB Molecule:gamma-glutamyl hydrolase;
PDBTitle: crystal structure of gamma-glutamyl hydrolase (c108a) complex with mtx
26c2ywjA_



not modelled 14.2 11
PDB header:transferase
Chain: A: PDB Molecule:glutamine amidotransferase subunit pdxt;
PDBTitle: crystal structure of uncharacterized conserved protein from2 methanocaldococcus jannaschii
27c1utyA_



not modelled 13.9 12
PDB header:viral protein
Chain: A: PDB Molecule:non-structural protein 2;
PDBTitle: crystal structure of the rna binding domain of bluetongue virus non-2 structural protein 2(ns2)
28d1utya_



not modelled 13.9 12
Fold:BTV NS2-like ssRNA-binding domain
Superfamily:BTV NS2-like ssRNA-binding domain
Family:BTV NS2-like ssRNA-binding domain
29d1xl3c1



not modelled 13.6 8
Fold:Type III secretion system domain
Superfamily:Type III secretion system domain
Family:TyeA-like
30d1o1ya_



not modelled 13.1 13
Fold:Flavodoxin-like
Superfamily:Class I glutamine amidotransferase-like
Family:Class I glutamine amidotransferases (GAT)
31c3uk7B_



not modelled 13.0 11
PDB header:transferase
Chain: B: PDB Molecule:class i glutamine amidotransferase-like domain-containing
PDBTitle: crystal structure of arabidopsis thaliana dj-1d
32c3l9kX_



not modelled 12.8 10
PDB header:motor protein
Chain: X: PDB Molecule:dynein intermediate chain, cytosolic;
PDBTitle: insights into dynein assembly from a dynein intermediate chain-light2 chain roadblock structure
33c3l9kZ_



not modelled 12.8 10
PDB header:motor protein
Chain: Z: PDB Molecule:dynein intermediate chain, cytosolic;
PDBTitle: insights into dynein assembly from a dynein intermediate chain-light2 chain roadblock structure
34d1q7ra_



not modelled 12.6 18
Fold:Flavodoxin-like
Superfamily:Class I glutamine amidotransferase-like
Family:Class I glutamine amidotransferases (GAT)
35c2ip6A_



not modelled 12.5 9
PDB header:antimicrobial protein
Chain: A: PDB Molecule:papb;
PDBTitle: crystal structure of pedb
36c3nvaB_



not modelled 12.1 6
PDB header:ligase
Chain: B: PDB Molecule:ctp synthase;
PDBTitle: dimeric form of ctp synthase from sulfolobus solfataricus
37c3r74B_



not modelled 11.9 28
PDB header:lyase, biosynthetic protein
Chain: B: PDB Molecule:anthranilate/para-aminobenzoate synthases component i;
PDBTitle: crystal structure of 2-amino-2-desoxyisochorismate synthase (adic)2 synthase phze from burkholderia lata 383
38c3cneD_



not modelled 11.4 5
PDB header:hydrolase
Chain: D: PDB Molecule:putative protease i;
PDBTitle: crystal structure of the putative protease i from bacteroides2 thetaiotaomicron
39c3fseB_



not modelled 11.3 16
PDB header:hydrolase
Chain: B: PDB Molecule:two-domain protein containing dj-1/thij/pfpi-like and
PDBTitle: crystal structure of a two-domain protein containing dj-1/thij/pfpi-2 like and ferritin-like domains (ava_4496) from anabaena variabilis3 atcc 29413 at 1.90 a resolution
40c4zdiE_



not modelled 11.1 9
PDB header:ligase
Chain: E: PDB Molecule:ctp synthase;
PDBTitle: crystal structure of the m. tuberculosis ctp synthase pyrg (apo form)
41c2lxnA_



not modelled 11.1 13
PDB header:ligase
Chain: A: PDB Molecule:gmp synthase [glutamine-hydrolyzing] subunit a;
PDBTitle: solution nmr structure of glutamine amido transferase subunit of2 gaunosine monophosphate synthetase from methanocaldococcus jannaschii
42d1i1qb_



not modelled 10.3 15
Fold:Flavodoxin-like
Superfamily:Class I glutamine amidotransferase-like
Family:Class I glutamine amidotransferases (GAT)
43c3tweA_



not modelled 10.3 28
PDB header:unknown function
Chain: A: PDB Molecule:alpha4h;
PDBTitle: crystal structure of the de novo designed peptide alpha4h
44c3tweB_



not modelled 10.1 28
PDB header:unknown function
Chain: B: PDB Molecule:alpha4h;
PDBTitle: crystal structure of the de novo designed peptide alpha4h
45c2ywdA_



not modelled 9.9 16
PDB header:transferase
Chain: A: PDB Molecule:glutamine amidotransferase subunit pdxt;
PDBTitle: crystal structure of glutamine amidotransferase
46c1l9xA_



not modelled 9.8 21
PDB header:hydrolase
Chain: A: PDB Molecule:gamma-glutamyl hydrolase;
PDBTitle: structure of gamma-glutamyl hydrolase
47d1l9xa_



not modelled 9.8 21
Fold:Flavodoxin-like
Superfamily:Class I glutamine amidotransferase-like
Family:Class I glutamine amidotransferases (GAT)
48d1i7qb_



not modelled 9.6 15
Fold:Flavodoxin-like
Superfamily:Class I glutamine amidotransferase-like
Family:Class I glutamine amidotransferases (GAT)
49d1cy5a_



not modelled 8.4 12
Fold:DEATH domain
Superfamily:DEATH domain
Family:Caspase recruitment domain, CARD
50c2r47C_



not modelled 8.1 18
PDB header:structural genomics, unknown function
Chain: C: PDB Molecule:uncharacterized protein mth_862;
PDBTitle: crystal structure of mth_862 protein of unknown function from2 methanothermobacter thermautotrophicus
51c1jvnB_



not modelled 8.0 19
PDB header:transferase
Chain: B: PDB Molecule:bifunctional histidine biosynthesis protein hishf;
PDBTitle: crystal structure of imidazole glycerol phosphate synthase: a tunnel2 through a (beta/alpha)8 barrel joins two active sites
52c1a3wB_



not modelled 7.7 17
PDB header:transferase
Chain: B: PDB Molecule:pyruvate kinase;
PDBTitle: pyruvate kinase from saccharomyces cerevisiae complexed with fbp, pg,2 mn2+ and k+
53c2mn4A_



not modelled 7.6 20
PDB header:de novo protein
Chain: A: PDB Molecule:computational designed protein based on structure template
PDBTitle: nmr solution structure of a computational designed protein based on2 structure template 1cy5
54c3katA_



not modelled 7.4 15
PDB header:apoptosis
Chain: A: PDB Molecule:nacht, lrr and pyd domains-containing protein 1;
PDBTitle: crystal structure of the card domain of the human nlrp1 protein,2 northeast structural genomics consortium target hr3486e
55c2ad5B_



not modelled 7.4 11
PDB header:ligase
Chain: B: PDB Molecule:ctp synthase;
PDBTitle: mechanisms of feedback regulation and drug resistance of ctp2 synthetases: structure of the e. coli ctps/ctp complex at 2.8-3 angstrom resolution.
56c3n7tA_



not modelled 7.3 8
PDB header:protein binding
Chain: A: PDB Molecule:macrophage binding protein;
PDBTitle: crystal structure of a macrophage binding protein from coccidioides2 immitis
57c3l3bA_



not modelled 7.2 21
PDB header:biosynthetic protein
Chain: A: PDB Molecule:es1 family protein;
PDBTitle: crystal structure of isoprenoid biosynthesis protein with2 amidotransferase-like domain from ehrlichia chaffeensis at 1.90a3 resolution
58d1jh3a_



not modelled 6.9 16
Fold:Alpha-L RNA-binding motif
Superfamily:Alpha-L RNA-binding motif
Family:Tyrosyl-tRNA synthetase (TyrRS), C-terminal domain
59c3x1mC_



not modelled 6.8 14
PDB header:transferase
Chain: C: PDB Molecule:phosphopantetheine adenylyltransferase;
PDBTitle: crystal structure of phosphopantetheine adenylyltransferase/ppat from2 pseudomonas aeruginosa with coa
60c5tgnA_



not modelled 6.8 15
PDB header:unknown function
Chain: A: PDB Molecule:uncharacterized protein;
PDBTitle: crystal structure of protein sthe_2403 from sphaerobacter thermophilus
61d1uptd_



not modelled 6.6 5
Fold:GRIP domain
Superfamily:GRIP domain
Family:GRIP domain
62d1qvwa_



not modelled 6.6 5
Fold:Flavodoxin-like
Superfamily:Class I glutamine amidotransferase-like
Family:DJ-1/PfpI
63d1uf0a_



not modelled 6.6 12
Fold:beta-Grasp (ubiquitin-like)
Superfamily:Doublecortin (DC)
Family:Doublecortin (DC)
64c3l0rA_



not modelled 6.4 14
PDB header:hydrolase inhibitor
Chain: A: PDB Molecule:cystatin-2;
PDBTitle: crystal structure of salivary cystatin from the soft tick ornithodoros2 moubata
65d1gpma2



not modelled 6.2 19
Fold:Flavodoxin-like
Superfamily:Class I glutamine amidotransferase-like
Family:Class I glutamine amidotransferases (GAT)
66c2mb9A_



not modelled 6.2 18
PDB header:signaling protein
Chain: A: PDB Molecule:b-cell lymphoma/leukemia 10;
PDBTitle: human bcl10 card
67c4lruA_



not modelled 6.1 8
PDB header:lyase
Chain: A: PDB Molecule:glyoxalase iii (glutathione-independent);
PDBTitle: crystal structure of glyoxalase iii (orf 19.251) from candida albicans
68d1sy7a1



not modelled 6.1 6
Fold:Flavodoxin-like
Superfamily:Class I glutamine amidotransferase-like
Family:Catalase, C-terminal domain
69d1wlfa1



not modelled 5.8 15
Fold:Cdc48 domain 2-like
Superfamily:Cdc48 domain 2-like
Family:Cdc48 domain 2-like
70c4uedB_



not modelled 5.8 23
PDB header:translation
Chain: B: PDB Molecule:eukaryotic translation factor 4e-binding protein 1;
PDBTitle: complex of human eif4e with the 4e binding protein 4e-bp1
71c2lsoA_



not modelled 5.7 24
PDB header:nuclear protein
Chain: A: PDB Molecule:histone h1x;
PDBTitle: solution nmr structure of the globular domain of human histone h1x,2 northeast structural genomics consortium (nesg) target hr7057a
72c3qsjA_



not modelled 5.5 10
PDB header:hydrolase
Chain: A: PDB Molecule:nudix hydrolase;
PDBTitle: crystal structure of nudix hydrolase from alicyclobacillus2 acidocaldarius
73d2pa2a1



not modelled 5.5 33
Fold:alpha/beta-Hammerhead
Superfamily:Ribosomal protein L16p/L10e
Family:Ribosomal protein L10e
74c2vgbB_



not modelled 5.5 10
PDB header:transferase
Chain: B: PDB Molecule:pyruvate kinase isozymes r/l;
PDBTitle: human erythrocyte pyruvate kinase
75d1qdlb_



not modelled 5.4 17
Fold:Flavodoxin-like
Superfamily:Class I glutamine amidotransferase-like
Family:Class I glutamine amidotransferases (GAT)
76c3f5dA_



not modelled 5.2 9
PDB header:structural genomics, unknown function
Chain: A: PDB Molecule:protein ydea;
PDBTitle: crystal structure of a protein of unknown function from bacillus2 subtilis
77c4i16A_



not modelled 5.2 28
PDB header:signaling protein
Chain: A: PDB Molecule:caspase recruitment domain-containing protein 11;
PDBTitle: crystal structure of carma1 card
78d1od6a_



not modelled 5.2 14
Fold:Adenine nucleotide alpha hydrolase-like
Superfamily:Nucleotidylyl transferase
Family:Adenylyltransferase
79c2qa7B_



not modelled 5.2 25
PDB header:actin binding
Chain: B: PDB Molecule:huntingtin-interacting protein 1;
PDBTitle: crystal structure of huntingtin-interacting protein 12 (hip1) coiled-coil domain with a basic surface suitable3 for hip-protein interactor (hippi)
80c3mxnA_



not modelled 5.1 5
PDB header:replication
Chain: A: PDB Molecule:recq-mediated genome instability protein 1;
PDBTitle: crystal structure of the rmi core complex

Binding site prediction 

Due to computational demand, binding site predictions are not run for batch jobs

If you want to predict binding sites, please manually submit your model of choice to 3DLigandSite

Transmembrane helix prediction 

Transmembrane helices have been predicted in your sequence to adopt the topology shown below