Phyre Home Retrieve Phyre Job Id
Emailmdejesus@rockefeller.edu
DescriptionRVBD0440_(groEL)_528611_530233
DateTue Jul 23 14:50:51 BST 2019
Unique Job IDf54526135124b6eb
SequenceMAKTIAYDEE ... Download FASTA
Job Typenormal
Job Expiry

Summary 

Top model
Image coloured by rainbow N → C terminus
Model dimensions (Å):X:69.213 Y:72.957 Z:69.130
Model (left) based on template c5cdiB_
Top template information
PDB header:chaperone
Chain: B: PDB Molecule:chaperonin 60b1;
PDBTitle: chloroplast chaperonin 60b1 of chlamydomonas
Confidence and coverage
Confidence:100.0% Coverage: 96%
519 residues ( 96% of your sequence) have been modelled with 100.0% confidence by the single highest scoring template.
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Sequence analysis 

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Secondary structure and disorder prediction [Show] 

Domain analysis [Show] 

Detailed template information [Hide] 

 

#
Template Alignment Coverage3D Model Confidence
% i.d. Template Information
1c5cdiB_



100.0 51
PDB header:chaperone
Chain: B: PDB Molecule:chaperonin 60b1;
PDBTitle: chloroplast chaperonin 60b1 of chlamydomonas
2c1kp8B_



100.0 60
PDB header:chaperone
Chain: B: PDB Molecule:groel protein;
PDBTitle: structural basis for groel-assisted protein folding from the crystal2 structure of (groel-kmgatp)14 at 2.0 a resolution
3c1we3D_



100.0 66
PDB header:chaperone
Chain: D: PDB Molecule:cpn60(groel);
PDBTitle: crystal structure of the chaperonin complex cpn60/cpn10/(adp)7 from2 thermus thermophilus
4c4pj1E_



100.0 47
PDB header:chaperone
Chain: E: PDB Molecule:60 kda heat shock protein, mitochondrial;
PDBTitle: crystal structure of the human mitochondrial chaperonin symmetrical2 'football' complex
5c5da8N_



100.0 56
PDB header:chaperone
Chain: N: PDB Molecule:60 kda chaperonin;
PDBTitle: crystal structure of chaperonin groel from
6c1iokE_



100.0 59
PDB header:chaperone
Chain: E: PDB Molecule:chaperonin 60;
PDBTitle: crystal structure of chaperonin-60 from paracoccus2 denitrificans
7c3p9ei_



100.0 19
PDB header:chaperone
Chain: I: PDB Molecule:
PDBTitle: the crystal structure of yeast cct reveals intrinsic asymmetry of2 eukaryotic cytosolic chaperonins
8c3iygG_



100.0 19
PDB header:chaperone
Chain: G: PDB Molecule:t-complex protein 1 subunit gamma;
PDBTitle: ca model of bovine tric/cct derived from a 4.0 angstrom cryo-em map
9c3iygE_



100.0 20
PDB header:chaperone
Chain: E: PDB Molecule:t-complex protein 1 subunit;
PDBTitle: ca model of bovine tric/cct derived from a 4.0 angstrom cryo-em map
10c3iygA_



100.0 19
PDB header:chaperone
Chain: A: PDB Molecule:t-complex protein 1 subunit alpha;
PDBTitle: ca model of bovine tric/cct derived from a 4.0 angstrom cryo-em map
11c3p9en_



100.0 19
PDB header:chaperone
Chain: N: PDB Molecule:
PDBTitle: the crystal structure of yeast cct reveals intrinsic asymmetry of2 eukaryotic cytosolic chaperonins
12c3iygD_



100.0 23
PDB header:chaperone
Chain: D: PDB Molecule:t-complex protein 1 subunit delta;
PDBTitle: ca model of bovine tric/cct derived from a 4.0 angstrom cryo-em map
13c4b2tE_



100.0 21
PDB header:chaperone
Chain: E: PDB Molecule:t-complex protein 1 subunit epsilon;
PDBTitle: the crystal structures of the eukaryotic chaperonin cct2 reveal its functional partitioning
14c4b2tQ_



100.0 21
PDB header:chaperone
Chain: Q: PDB Molecule:t-complex protein 1 subunit theta;
PDBTitle: the crystal structures of the eukaryotic chaperonin cct2 reveal its functional partitioning
15c3p9dL_



100.0 21
PDB header:chaperone
Chain: L: PDB Molecule:t-complex protein 1 subunit delta;
PDBTitle: the crystal structure of yeast cct reveals intrinsic asymmetry of2 eukaryotic cytosolic chaperonins
16c4b2tD_



100.0 25
PDB header:chaperone
Chain: D: PDB Molecule:t-complex protein 1 subunit delta;
PDBTitle: the crystal structures of the eukaryotic chaperonin cct2 reveal its functional partitioning
17c1q2vA_



100.0 26
PDB header:chaperone
Chain: A: PDB Molecule:thermosome alpha subunit;
PDBTitle: crystal structure of the chaperonin from thermococcus strain ks-12 (nucleotide-free form)
18c3losC_



100.0 27
PDB header:chaperone
Chain: C: PDB Molecule:chaperonin;
PDBTitle: atomic model of mm-cpn in the closed state
19c3iygZ_



100.0 21
PDB header:chaperone
Chain: Z: PDB Molecule:t-complex protein 1 subunit zeta;
PDBTitle: ca model of bovine tric/cct derived from a 4.0 angstrom cryo-em map
20c3p9eo_



100.0 20
PDB header:chaperone
Chain: O: PDB Molecule:
PDBTitle: the crystal structure of yeast cct reveals intrinsic asymmetry of2 eukaryotic cytosolic chaperonins
21c3j1bA_



not modelled 100.0 23
PDB header:chaperone
Chain: A: PDB Molecule:chaperonin alpha subunit;
PDBTitle: cryo-em structure of 8-fold symmetric ratcpn-alpha in apo state
22c3rtkA_



not modelled 100.0 99
PDB header:chaperone
Chain: A: PDB Molecule:60 kda chaperonin 2;
PDBTitle: crystal structure of cpn60.2 from mycobacterium tuberculosis at 2.8a
23c3iygQ_



not modelled 100.0 21
PDB header:chaperone
Chain: Q: PDB Molecule:t-complex protein 1 subunit theta;
PDBTitle: ca model of bovine tric/cct derived from a 4.0 angstrom cryo-em map
24c3p9ee_



not modelled 100.0 18
PDB header:chaperone
Chain: E: PDB Molecule:
PDBTitle: the crystal structure of yeast cct reveals intrinsic asymmetry of2 eukaryotic cytosolic chaperonins
25c1a6eA_



not modelled 100.0 24
PDB header:chaperonin
Chain: A: PDB Molecule:thermosome (alpha subunit);
PDBTitle: thermosome-mg-adp-alf3 complex
26c3p9eb_



not modelled 100.0 22
PDB header:chaperone
Chain: B: PDB Molecule:
PDBTitle: the crystal structure of yeast cct reveals intrinsic asymmetry of2 eukaryotic cytosolic chaperonins
27c3izkF_



not modelled 100.0 26
PDB header:chaperone
Chain: F: PDB Molecule:chaperonin;
PDBTitle: mm-cpn rls deltalid with atp
28c3ko1H_



not modelled 100.0 24
PDB header:chaperone
Chain: H: PDB Molecule:chaperonin;
PDBTitle: cystal structure of thermosome from acidianus tengchongensis strain s5
29c3kttB_



not modelled 100.0 23
PDB header:chaperone
Chain: B: PDB Molecule:t-complex protein 1 subunit beta;
PDBTitle: atomic model of bovine tric cct2(beta) subunit derived from a 4.02 angstrom cryo-em map
30c4b2tA_



not modelled 100.0 19
PDB header:chaperone
Chain: A: PDB Molecule:t-complex protein 1 subunit alpha;
PDBTitle: the crystal structures of the eukaryotic chaperonin cct2 reveal its functional partitioning
31c1a6eB_



not modelled 100.0 24
PDB header:chaperonin
Chain: B: PDB Molecule:thermosome (beta subunit);
PDBTitle: thermosome-mg-adp-alf3 complex
32c4b2tH_



not modelled 100.0 21
PDB header:chaperone
Chain: H: PDB Molecule:t-complex protein 1 subunit eta;
PDBTitle: the crystal structures of the eukaryotic chaperonin cct2 reveal its functional partitioning
33c4b2tG_



not modelled 100.0 19
PDB header:chaperone
Chain: G: PDB Molecule:t-complex protein 1 subunit gamma;
PDBTitle: the crystal structures of the eukaryotic chaperonin cct2 reveal its functional partitioning
34c3iygH_



not modelled 100.0 19
PDB header:chaperone
Chain: H: PDB Molecule:t-complex protein 1 subunit eta;
PDBTitle: ca model of bovine tric/cct derived from a 4.0 angstrom cryo-em map
35c3p9ec_



not modelled 100.0 19
PDB header:chaperone
Chain: C: PDB Molecule:
PDBTitle: the crystal structure of yeast cct reveals intrinsic asymmetry of2 eukaryotic cytosolic chaperonins
36c5x9vA_



not modelled 100.0 23
PDB header:chaperone
Chain: A: PDB Molecule:thermosome, alpha subunit;
PDBTitle: crystal structure of group iii chaperonin in the closed state
37c4xcgB_



not modelled 100.0 25
PDB header:chaperone
Chain: B: PDB Molecule:thermosome subunit beta;
PDBTitle: crystal structure of a hexadecameric tf55 complex from s.2 solfataricus, crystal form i
38c1sjpA_



not modelled 100.0 97
PDB header:chaperone
Chain: A: PDB Molecule:60 kda chaperonin 2;
PDBTitle: mycobacterium tuberculosis chaperonin60.2
39c3p9dP_



not modelled 100.0 17
PDB header:chaperone
Chain: P: PDB Molecule:t-complex protein 1 subunit theta;
PDBTitle: the crystal structure of yeast cct reveals intrinsic asymmetry of2 eukaryotic cytosolic chaperonins
40c4xciB_



not modelled 100.0 25
PDB header:chaperone
Chain: B: PDB Molecule:thermosome subunit beta;
PDBTitle: crystal structure of a hexadecameric tf55 complex from s.2 solfataricus, crystal form ii
41c4b2tg_



not modelled 100.0 24
PDB header:chaperone
Chain: G: PDB Molecule:t-complex protein 1 subunit gamma;
PDBTitle: the crystal structures of the eukaryotic chaperonin cct2 reveal its functional partitioning
42c4b2th_



not modelled 100.0 26
PDB header:chaperone
Chain: H: PDB Molecule:t-complex protein 1 subunit eta;
PDBTitle: the crystal structures of the eukaryotic chaperonin cct2 reveal its functional partitioning
43c4b2tq_



not modelled 100.0 21
PDB header:chaperone
Chain: Q: PDB Molecule:t-complex protein 1 subunit theta;
PDBTitle: the crystal structures of the eukaryotic chaperonin cct2 reveal its functional partitioning
44c4b2ta_



not modelled 100.0 24
PDB header:chaperone
Chain: A: PDB Molecule:t-complex protein 1 subunit alpha;
PDBTitle: the crystal structures of the eukaryotic chaperonin cct2 reveal its functional partitioning
45c4xciA_



not modelled 100.0 32
PDB header:chaperone
Chain: A: PDB Molecule:thermosome subunit alpha;
PDBTitle: crystal structure of a hexadecameric tf55 complex from s.2 solfataricus, crystal form ii
46c3aq1B_



not modelled 100.0 22
PDB header:chaperone
Chain: B: PDB Molecule:thermosome subunit;
PDBTitle: open state monomer of a group ii chaperonin from methanococcoides2 burtonii
47d1q3qa1



not modelled 100.0 41
Fold:GroEL equatorial domain-like
Superfamily:GroEL equatorial domain-like
Family:Group II chaperonin (CCT, TRIC), ATPase domain
48d1a6db1



not modelled 100.0 38
Fold:GroEL equatorial domain-like
Superfamily:GroEL equatorial domain-like
Family:Group II chaperonin (CCT, TRIC), ATPase domain
49d1a6da1



not modelled 100.0 39
Fold:GroEL equatorial domain-like
Superfamily:GroEL equatorial domain-like
Family:Group II chaperonin (CCT, TRIC), ATPase domain
50d1we3a1



not modelled 100.0 76
Fold:GroEL equatorial domain-like
Superfamily:GroEL equatorial domain-like
Family:GroEL chaperone, ATPase domain
51d1ioka1



not modelled 100.0 64
Fold:GroEL equatorial domain-like
Superfamily:GroEL equatorial domain-like
Family:GroEL chaperone, ATPase domain
52d1kp8a1



not modelled 100.0 68
Fold:GroEL equatorial domain-like
Superfamily:GroEL equatorial domain-like
Family:GroEL chaperone, ATPase domain
53d1sjpa1



not modelled 100.0 86
Fold:GroEL equatorial domain-like
Superfamily:GroEL equatorial domain-like
Family:GroEL chaperone, ATPase domain
54c3m6cA_



not modelled 99.9 64
PDB header:chaperone
Chain: A: PDB Molecule:60 kda chaperonin 1;
PDBTitle: crystal structure of mycobacterium tuberculosis groel1 apical domain
55d1we3a2



not modelled 99.9 68
Fold:The "swivelling" beta/beta/alpha domain
Superfamily:GroEL apical domain-like
Family:GroEL-like chaperone, apical domain
56d1sjpa2



not modelled 99.9 100
Fold:The "swivelling" beta/beta/alpha domain
Superfamily:GroEL apical domain-like
Family:GroEL-like chaperone, apical domain
57d1kida_



not modelled 99.9 67
Fold:The "swivelling" beta/beta/alpha domain
Superfamily:GroEL apical domain-like
Family:GroEL-like chaperone, apical domain
58c5cdjA_



not modelled 99.9 49
PDB header:chaperone
Chain: A: PDB Molecule:rubisco large subunit-binding protein subunit alpha,
PDBTitle: apical domain of chloroplast chaperonin 60a
59d1oela2



not modelled 99.9 65
Fold:The "swivelling" beta/beta/alpha domain
Superfamily:GroEL apical domain-like
Family:GroEL-like chaperone, apical domain
60d1dk7a_



not modelled 99.7 64
Fold:The "swivelling" beta/beta/alpha domain
Superfamily:GroEL apical domain-like
Family:GroEL-like chaperone, apical domain
61d1srva_



not modelled 99.7 70
Fold:The "swivelling" beta/beta/alpha domain
Superfamily:GroEL apical domain-like
Family:GroEL-like chaperone, apical domain
62d1gmla_



not modelled 99.5 14
Fold:The "swivelling" beta/beta/alpha domain
Superfamily:GroEL apical domain-like
Family:Group II chaperonin (CCT, TRIC), apical domain
63d1assa_



not modelled 99.4 17
Fold:The "swivelling" beta/beta/alpha domain
Superfamily:GroEL apical domain-like
Family:Group II chaperonin (CCT, TRIC), apical domain
64d1ioka2



not modelled 99.4 68
Fold:The "swivelling" beta/beta/alpha domain
Superfamily:GroEL apical domain-like
Family:GroEL-like chaperone, apical domain
65d1q3qa2



not modelled 99.3 17
Fold:The "swivelling" beta/beta/alpha domain
Superfamily:GroEL apical domain-like
Family:Group II chaperonin (CCT, TRIC), apical domain
66d1a6db2



not modelled 99.3 18
Fold:The "swivelling" beta/beta/alpha domain
Superfamily:GroEL apical domain-like
Family:Group II chaperonin (CCT, TRIC), apical domain
67d1sjpa3



not modelled 98.1 63
Fold:GroEL-intermediate domain like
Superfamily:GroEL-intermediate domain like
Family:GroEL-like chaperone, intermediate domain
68d1a6db3



not modelled 98.0 13
Fold:GroEL-intermediate domain like
Superfamily:GroEL-intermediate domain like
Family:Group II chaperonin (CCT, TRIC), intermediate domain
69d1kp8a3



not modelled 97.9 35
Fold:GroEL-intermediate domain like
Superfamily:GroEL-intermediate domain like
Family:GroEL-like chaperone, intermediate domain
70d1a6da3



not modelled 97.8 12
Fold:GroEL-intermediate domain like
Superfamily:GroEL-intermediate domain like
Family:Group II chaperonin (CCT, TRIC), intermediate domain
71d1q3qa3



not modelled 97.3 15
Fold:GroEL-intermediate domain like
Superfamily:GroEL-intermediate domain like
Family:Group II chaperonin (CCT, TRIC), intermediate domain
72d1ioka3



not modelled 96.8 49
Fold:GroEL-intermediate domain like
Superfamily:GroEL-intermediate domain like
Family:GroEL-like chaperone, intermediate domain
73d1we3a3



not modelled 94.8 38
Fold:GroEL-intermediate domain like
Superfamily:GroEL-intermediate domain like
Family:GroEL-like chaperone, intermediate domain
74d1d7ya2



not modelled 25.2 31
Fold:FAD/NAD(P)-binding domain
Superfamily:FAD/NAD(P)-binding domain
Family:FAD/NAD-linked reductases, N-terminal and central domains
75c3hazA_



not modelled 21.8 23
PDB header:oxidoreductase
Chain: A: PDB Molecule:proline dehydrogenase;
PDBTitle: crystal structure of bifunctional proline utilization a2 (puta) protein
76d1q1ra2



not modelled 19.3 28
Fold:FAD/NAD(P)-binding domain
Superfamily:FAD/NAD(P)-binding domain
Family:FAD/NAD-linked reductases, N-terminal and central domains
77d1m6ia2



not modelled 17.1 25
Fold:FAD/NAD(P)-binding domain
Superfamily:FAD/NAD(P)-binding domain
Family:FAD/NAD-linked reductases, N-terminal and central domains
78c2ogxA_



not modelled 16.2 18
PDB header:metal binding protein
Chain: A: PDB Molecule:molybdenum storage protein subunit alpha;
PDBTitle: the crystal structure of the molybdenum storage protein from2 azotobacter vinelandii loaded with polyoxotungstates (wsto)
79d1tj1a1



not modelled 12.9 17
Fold:N-terminal domain of bifunctional PutA protein
Superfamily:N-terminal domain of bifunctional PutA protein
Family:N-terminal domain of bifunctional PutA protein
80c4zn6B_



not modelled 12.7 14
PDB header:oxidoreductase
Chain: B: PDB Molecule:1-deoxy-d-xylulose 5-phosphate reductoisomerase;
PDBTitle: x-ray crystal structure of 1-deoxy-d-xylulose 5-phosphate2 reductoisomerase (ispc) from acinetobacter baumannii
81d1ovma1



not modelled 12.3 13
Fold:DHS-like NAD/FAD-binding domain
Superfamily:DHS-like NAD/FAD-binding domain
Family:Pyruvate oxidase and decarboxylase, middle domain
82d1xhca2



not modelled 11.7 36
Fold:FAD/NAD(P)-binding domain
Superfamily:FAD/NAD(P)-binding domain
Family:FAD/NAD-linked reductases, N-terminal and central domains
83d1vl2a2



not modelled 11.4 15
Fold:Argininosuccinate synthetase, C-terminal domain
Superfamily:Argininosuccinate synthetase, C-terminal domain
Family:Argininosuccinate synthetase, C-terminal domain
84c5kf6B_



not modelled 11.4 24
PDB header:oxidoreductase
Chain: B: PDB Molecule:bifunctional protein puta;
PDBTitle: structure of proline utilization a from sinorhizobium meliloti2 complexed with l-tetrahydrofuroic acid and nad+ in space group p21
85d1j20a2



not modelled 10.5 17
Fold:Argininosuccinate synthetase, C-terminal domain
Superfamily:Argininosuccinate synthetase, C-terminal domain
Family:Argininosuccinate synthetase, C-terminal domain
86c2xdqA_



not modelled 10.2 17
PDB header:oxidoreductase
Chain: A: PDB Molecule:light-independent protochlorophyllide reductase subunit n;
PDBTitle: dark operative protochlorophyllide oxidoreductase (chln-chlb)2 complex
87d1gv4a2



not modelled 9.8 28
Fold:FAD/NAD(P)-binding domain
Superfamily:FAD/NAD(P)-binding domain
Family:FAD/NAD-linked reductases, N-terminal and central domains
88c3tekA_



not modelled 9.7 36
PDB header:dna binding protein
Chain: A: PDB Molecule:thermodbp-single stranded dna binding protein;
PDBTitle: thermodbp: a non-canonical single-stranded dna binding protein with a2 novel structure and mechanism
89c6iczX_



not modelled 9.3 27
PDB header:splicing
Chain: X: PDB Molecule:prkr-interacting protein 1;
PDBTitle: cryo-em structure of a human post-catalytic spliceosome (p complex) at2 3.0 angstrom
90c2ynmC_



not modelled 9.1 14
PDB header:oxidoreductase
Chain: C: PDB Molecule:light-independent protochlorophyllide reductase subunit n;
PDBTitle: structure of the adpxalf3-stabilized transition state of the2 nitrogenase-like dark-operative protochlorophyllide oxidoreductase3 complex from prochlorococcus marinus with its substrate4 protochlorophyllide a
91c3nrdB_



not modelled 9.1 19
PDB header:nucleotide binding protein
Chain: B: PDB Molecule:histidine triad (hit) protein;
PDBTitle: crystal structure of a histidine triad (hit) protein (smc02904) from2 sinorhizobium meliloti 1021 at 2.06 a resolution
92c4gmjE_



not modelled 9.1 7
PDB header:rna binding protein
Chain: E: PDB Molecule:ccr4-not transcription complex subunit 1;
PDBTitle: structure of human not1 mif4g domain co-crystallized with caf1
93c4ct4C_



not modelled 9.0 7
PDB header:rna binding protein
Chain: C: PDB Molecule:ccr4-not transcription complex subunit 1;
PDBTitle: cnot1 mif4g domain - ddx6 complex
94c2d9sA_



not modelled 8.5 17
PDB header:ligase
Chain: A: PDB Molecule:cbl e3 ubiquitin protein ligase;
PDBTitle: solution structure of rsgi ruh-049, a uba domain from mouse2 cdna
95c2jnhA_



not modelled 8.0 26
PDB header:ligase
Chain: A: PDB Molecule:e3 ubiquitin-protein ligase cbl-b;
PDBTitle: solution structure of the uba domain from cbl-b
96c3i24B_



not modelled 8.0 18
PDB header:hydrolase
Chain: B: PDB Molecule:hit family hydrolase;
PDBTitle: crystal structure of a hit family hydrolase protein from vibrio2 fischeri. northeast structural genomics consortium target id vfr176
97c1k87A_



not modelled 7.8 14
PDB header:oxidoreductase
Chain: A: PDB Molecule:proline dehydrogenase;
PDBTitle: crystal structure of e.coli puta (residues 1-669)
98c2do6A_



not modelled 7.7 22
PDB header:ligase
Chain: A: PDB Molecule:e3 ubiquitin-protein ligase cbl-b;
PDBTitle: solution structure of rsgi ruh-065, a uba domain from human2 cdna
99c6jqsA_



not modelled 7.6 17
PDB header:dna binding protein
Chain: A: PDB Molecule:dna-binding response regulator;
PDBTitle: structure of transcription factor, gere

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