Phyre Home Retrieve Phyre Job Id
Emailmdejesus@rockefeller.edu
DescriptionRVBD0441c_(-)_530299_530727
DateTue Jul 23 14:50:51 BST 2019
Unique Job ID7f40abfd659b4563
SequenceVGAKKVDLKR ... Download FASTA
Job Typenormal
Job Expiry

Summary 

Top model
Image coloured by rainbow N → C terminus
Model dimensions (Å):X:40.598 Y:36.853 Z:35.308
Model (left) based on template c2re7A_
Top template information
PDB header:oxidoreductase
Chain: A: PDB Molecule:uncharacterized protein;
PDBTitle: crystal structure of a pyridoxamine 5'-phosphate oxidase related2 protein (psyc_0186) from psychrobacter arcticus 273-4 at 2.50 a3 resolution
Confidence and coverage
Confidence: 97.8% Coverage: 63%
90 residues ( 63% of your sequence) have been modelled with 97.8% confidence by the single highest scoring template.
Additional confident templates have been detected (see Domain analysis) which cover other regions of your sequence.
122 residues ( 86%) could be modelled at >90% confidence using multiple-templates.
You may wish to try resubmitting your sequence in "intensive" mode to model more of your sequence.
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Sequence analysis 

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Domain analysis [Show] 

Detailed template information [Hide] 

 

#
Template Alignment Coverage3D Model Confidence
% i.d. Template Information
1c2re7A_
97.8 14
PDB header:oxidoreductase
Chain: A: PDB Molecule:uncharacterized protein;
PDBTitle: crystal structure of a pyridoxamine 5'-phosphate oxidase related2 protein (psyc_0186) from psychrobacter arcticus 273-4 at 2.50 a3 resolution
2c5escD_
97.5 17
PDB header:oxidoreductase
Chain: D: PDB Molecule:hupz;
PDBTitle: crystal structure of group a streptococcus hupz
3d1w9aa_
97.4 16
Fold:Split barrel-like
Superfamily:FMN-binding split barrel
Family:PNP-oxidase like
4d2i02a1
97.3 13
Fold:Split barrel-like
Superfamily:FMN-binding split barrel
Family:PNP-oxidase like
5c2htdB_
97.3 21
PDB header:oxidoreductase
Chain: B: PDB Molecule:predicted flavin-nucleotide-binding protein from cog3576
PDBTitle: crystal structure of a putative pyridoxamine 5'-phosphate oxidase2 (ldb0262) from lactobacillus delbrueckii subsp. at 1.60 a resolution
6c2q9kA_
97.2 17
PDB header:oxidoreductase
Chain: A: PDB Molecule:uncharacterized protein;
PDBTitle: crystal structure of a putative oxidoreductase (exig_1997) from2 exiguobacterium sibiricum 255-15 at 1.59 a resolution
7c2iabB_
97.0 19
PDB header:unknown function
Chain: B: PDB Molecule:hypothetical protein;
PDBTitle: crystal structure of a protein with fmn-binding split barrel fold2 (np_828636.1) from streptomyces avermitilis at 2.00 a resolution
8c2hhzA_
97.0 14
PDB header:oxidoreductase
Chain: A: PDB Molecule:pyridoxamine 5'-phosphate oxidase-related;
PDBTitle: crystal structure of a pyridoxamine 5'-phosphate oxidase-related2 protein (ssuidraft_2804) from streptococcus suis 89/1591 at 2.00 a3 resolution
9d2fhqa1
96.9 11
Fold:Split barrel-like
Superfamily:FMN-binding split barrel
Family:PNP-oxidase like
10d2hq7a1
96.9 9
Fold:Split barrel-like
Superfamily:FMN-binding split barrel
Family:PNP-oxidase like
11c3dmbA_
96.9 14
PDB header:oxidoreductase
Chain: A: PDB Molecule:putative general stress protein 26 with a pnp-oxidase like
PDBTitle: crystal structure of a putative general stress family protein2 (xcc2264) from xanthomonas campestris pv. campestris at 2.30 a3 resolution
12c3f7eB_
96.5 18
PDB header:unknown function
Chain: B: PDB Molecule:pyridoxamine 5'-phosphate oxidase-related, fmn-
PDBTitle: msmeg_3380 f420 reductase
13d1flma_
96.4 16
Fold:Split barrel-like
Superfamily:FMN-binding split barrel
Family:PNP-oxidase like
14d2asfa1
96.3 21
Fold:Split barrel-like
Superfamily:FMN-binding split barrel
Family:PNP-oxidase like
15c3db0B_
96.3 17
PDB header:oxidoreductase
Chain: B: PDB Molecule:lin2891 protein;
PDBTitle: crystal structure of putative pyridoxamine 5'-phosphate oxidase2 (np_472219.1) from listeria innocua at 2.00 a resolution
16c3tgvD_
96.3 18
PDB header:heme binding protein
Chain: D: PDB Molecule:heme-binding protein hutz;
PDBTitle: crystal structure of hutz,the heme storsge protein from vibrio2 cholerae
17d1rfea_
96.2 16
Fold:Split barrel-like
Superfamily:FMN-binding split barrel
Family:PNP-oxidase like
18c2qeaB_
96.0 19
PDB header:oxidoreductase
Chain: B: PDB Molecule:putative general stress protein 26;
PDBTitle: crystal structure of a putative general stress protein 26 (jann_0955)2 from jannaschia sp. ccs1 at 2.46 a resolution
19c3ec6A_
96.0 14
PDB header:structural genomics, unknown function
Chain: A: PDB Molecule:general stress protein 26;
PDBTitle: crystal structure of the general stress protein 26 from bacillus2 anthracis str. sterne
20c3u34D_
95.9 11
PDB header:protein binding
Chain: D: PDB Molecule:general stress protein;
PDBTitle: crystal structure of the general stress fmn/fad binding protein from2 the phytopathogen xanthomonas citri
21c2ig6B_
not modelled 95.7 18
PDB header:oxidoreductase
Chain: B: PDB Molecule:nimc/nima family protein;
PDBTitle: crystal structure of a nimc/nima family protein (ca_c2569) from2 clostridium acetobutylicum at 1.80 a resolution
22d1vl7a_
not modelled 95.6 12
Fold:Split barrel-like
Superfamily:FMN-binding split barrel
Family:PNP-oxidase like
23c4zkyB_
not modelled 95.6 24
PDB header:oxidoreductase
Chain: B: PDB Molecule:pyridoxamine 5-phosphate oxidase;
PDBTitle: structure of f420 binding protein, msmeg_6526, from mycobacterium2 smegmatis
24c3u0iA_
not modelled 95.5 16
PDB header:unknown function
Chain: A: PDB Molecule:probable fad-binding, putative uncharacterized protein;
PDBTitle: crystal structure of a probable fad-binding, putative uncharacterized2 protein from brucella melitensis
25d1ty9a_
not modelled 94.7 22
Fold:Split barrel-like
Superfamily:FMN-binding split barrel
Family:PNP-oxidase like
26c3cp3A_
not modelled 94.4 19
PDB header:structural genomics, unknown function
Chain: A: PDB Molecule:uncharacterized protein;
PDBTitle: crystal structure of conserved protein of unknown function dip18742 from corynebacterium diphtheriae
27d2hq9a1
not modelled 94.1 18
Fold:Split barrel-like
Superfamily:FMN-binding split barrel
Family:PNP-oxidase like
28d1t9ma_
not modelled 93.9 26
Fold:Split barrel-like
Superfamily:FMN-binding split barrel
Family:PNP-oxidase like
29d2fg9a1
not modelled 93.9 13
Fold:Split barrel-like
Superfamily:FMN-binding split barrel
Family:PNP-oxidase like
30c3fkhB_
not modelled 92.8 9
PDB header:oxidoreductase
Chain: B: PDB Molecule:putative pyridoxamine 5'-phosphate oxidase;
PDBTitle: crystal structure of putative pyridoxamine 5'-phosphate oxidase2 (np_601736.1) from corynebacterium glutamicum atcc 13032 kitasato at3 2.51 a resolution
31d1dnla_
not modelled 92.6 23
Fold:Split barrel-like
Superfamily:FMN-binding split barrel
Family:PNP-oxidase like
32c4hmwB_
not modelled 92.4 17
PDB header:oxidoreductase
Chain: B: PDB Molecule:pyridoxamine 5'-phosphate oxidase;
PDBTitle: crystal structure of phzg from burkholderia lata 383
33c6eciQ_
not modelled 91.7 19
PDB header:fad-binding protein
Chain: Q: PDB Molecule:pyridoxamine 5'-phosphate oxidase-related, fmn-binding
PDBTitle: structure of the fad binding protein msmeg_5243 from mycobacterium2 smegmatis
34c2htiA_
not modelled 91.3 16
PDB header:fmn-binding protein
Chain: A: PDB Molecule:bh0577 protein;
PDBTitle: crystal structure of a flavin-nucleotide-binding protein (bh_0577)2 from bacillus halodurans at 2.50 a resolution
35d2htia1
not modelled 91.3 16
Fold:Split barrel-like
Superfamily:FMN-binding split barrel
Family:PNP-oxidase like
36d1nrga_
not modelled 90.1 12
Fold:Split barrel-like
Superfamily:FMN-binding split barrel
Family:PNP-oxidase like
37c1nrgA_
not modelled 90.1 12
PDB header:oxidoreductase
Chain: A: PDB Molecule:pyridoxine 5'-phosphate oxidase;
PDBTitle: structure and properties of recombinant human pyridoxine-5'-phosphate2 oxidase
38c2ou5B_
not modelled 80.3 13
PDB header:flavoprotein
Chain: B: PDB Molecule:pyridoxamine 5'-phosphate oxidase-related, fmn-binding;
PDBTitle: crystal structure of a pyridoxamine 5'-phosphate oxidase-related fmn-2 binding protein (jann_0254) from jannaschia sp. ccs1 at 1.60 a3 resolution
39c2a2jA_
not modelled 78.0 17
PDB header:oxidoreductase
Chain: A: PDB Molecule:pyridoxamine 5'-phosphate oxidase;
PDBTitle: crystal structure of a putative pyridoxine 5'-phosphate oxidase2 (rv2607) from mycobacterium tuberculosis
40d2a2ja1
not modelled 78.0 17
Fold:Split barrel-like
Superfamily:FMN-binding split barrel
Family:PNP-oxidase like
41d2fura1
not modelled 62.2 16
Fold:Split barrel-like
Superfamily:FMN-binding split barrel
Family:PNP-oxidase like
42c3h96B_
not modelled 61.7 12
PDB header:flavoprotein
Chain: B: PDB Molecule:f420-h2 dependent reductase a;
PDBTitle: msmeg_3358 f420 reductase
43c3r5zB_
not modelled 60.7 18
PDB header:unknown function
Chain: B: PDB Molecule:putative uncharacterized protein;
PDBTitle: structure of a deazaflavin-dependent reductase from nocardia2 farcinica, with co-factor f420
44c4l82D_
not modelled 58.1 7
PDB header:oxidoreductase
Chain: D: PDB Molecule:rifea.00250.a;
PDBTitle: structure of a putative oxidoreductase from rickettsia felis
45c3r5yC_
not modelled 50.0 25
PDB header:unknown function
Chain: C: PDB Molecule:putative uncharacterized protein;
PDBTitle: structure of a deazaflavin-dependent nitroreductase from nocardia2 farcinica, with co-factor f420
46d2fug31
not modelled 47.5 44
Fold:Double psi beta-barrel
Superfamily:ADC-like
Family:Formate dehydrogenase/DMSO reductase, C-terminal domain
47c3dnhB_
not modelled 45.3 23
PDB header:structural genomics, unknown function
Chain: B: PDB Molecule:uncharacterized protein atu2129;
PDBTitle: the crystal structure of the protein atu2129 (unknown function) from2 agrobacterium tumefaciens str. c58
48c3r5wO_
not modelled 44.6 22
PDB header:oxidoreductase
Chain: O: PDB Molecule:deazaflavin-dependent nitroreductase;
PDBTitle: structure of ddn, the deazaflavin-dependent nitroreductase from2 mycobacterium tuberculosis involved in bioreductive activation of pa-3 824, with co-factor f420
49d1ci0a_
not modelled 43.6 17
Fold:Split barrel-like
Superfamily:FMN-binding split barrel
Family:PNP-oxidase like
50c4y9iA_
not modelled 39.1 18
PDB header:oxidoreductase
Chain: A: PDB Molecule:mycobacterium tuberculosis paralogous family 11;
PDBTitle: structure of f420-h2 dependent reductase (fdr-a) msmeg_2027
51c5yanE_
not modelled 36.0 78
PDB header:structural protein
Chain: E: PDB Molecule:collagen;
PDBTitle: deconstructing the salt-bridge network of a computationally designed2 collagen heterotrimer
52c5yanC_
not modelled 35.7 78
PDB header:structural protein
Chain: C: PDB Molecule:collagen;
PDBTitle: deconstructing the salt-bridge network of a computationally designed2 collagen heterotrimer
53c2bsjB_
not modelled 35.5 28
PDB header:chaperone
Chain: B: PDB Molecule:chaperone protein syct;
PDBTitle: native crystal structure of the type iii secretion chaperone syct from2 yersinia enterocolitica
54c5yanF_
not modelled 35.3 78
PDB header:structural protein
Chain: F: PDB Molecule:collagen;
PDBTitle: deconstructing the salt-bridge network of a computationally designed2 collagen heterotrimer
55c5yanB_
not modelled 34.9 78
PDB header:structural protein
Chain: B: PDB Molecule:collagen;
PDBTitle: deconstructing the salt-bridge network of a computationally designed2 collagen heterotrimer
56d1t62a_
not modelled 34.2 19
Fold:PUA domain-like
Superfamily:PUA domain-like
Family:Hypothetical protein EF3133
57c4ybnB_
not modelled 32.8 22
PDB header:oxidoreductase
Chain: B: PDB Molecule:flavin-nucleotide-binding protein;
PDBTitle: structure of the fad and heme binding protein msmeg_4975 from2 mycobacterium smegmatis
58c3s9xA_
not modelled 30.1 0
PDB header:structural genomics, unknown function
Chain: A: PDB Molecule:asch domain;
PDBTitle: high resolution crystal structure of asch domain from lactobacillus2 crispatus jv v101
59c3nfwB_
not modelled 29.8 19
PDB header:oxidoreductase
Chain: B: PDB Molecule:flavin reductase-like, fmn-binding protein;
PDBTitle: crystal structure of nitrilotriacetate monooxygenase component b2 (a0r521 homolog) from mycobacterium thermoresistibile
60c2r0xA_
not modelled 29.3 12
PDB header:oxidoreductase
Chain: A: PDB Molecule:possible flavin reductase;
PDBTitle: crystal structure of a putative flavin reductase (ycdh, hs_1225) from2 haemophilus somnus 129pt at 1.06 a resolution
61d2arza1
not modelled 28.2 17
Fold:Split barrel-like
Superfamily:FMN-binding split barrel
Family:PNP-oxidase like
62c2cjqA_
not modelled 24.4 20
PDB header:transferase
Chain: A: PDB Molecule:rna-directed rna polymerase;
PDBTitle: bovine viral diarrhea virus cp7-r12 rna-dependent rna2 polymerase
63c3mfbA_
not modelled 24.0 20
PDB header:structural genomics, unknown function
Chain: A: PDB Molecule:uncharacterized protein;
PDBTitle: crystal structure of the s-type pyocin domain of eca1669 protein from2 erwinia carotovora, northeast structural genomics consortium target3 ewr82c
64c3isyA_
not modelled 24.0 18
PDB header:protein binding
Chain: A: PDB Molecule:intracellular proteinase inhibitor;
PDBTitle: crystal structure of an intracellular proteinase inhibitor (ipi,2 bsu11130) from bacillus subtilis at 2.61 a resolution
65c4z29B_
not modelled 21.6 36
PDB header:signaling protein
Chain: B: PDB Molecule:magnetotaxis protein mtxa;
PDBTitle: crystal structure of the magnetobacterial protein mtxa c-terminal2 domain
66c3pftA_
not modelled 20.9 12
PDB header:oxidoreductase
Chain: A: PDB Molecule:flavin reductase;
PDBTitle: crystal structure of untagged c54a mutant flavin reductase (dszd) in2 complex with fmn from mycobacterium goodii
67d1gx5a_
not modelled 17.4 30
Fold:DNA/RNA polymerases
Superfamily:DNA/RNA polymerases
Family:RNA-dependent RNA-polymerase
68c4makA_
not modelled 16.3 29
PDB header:hydrolase
Chain: A: PDB Molecule:crispr-associated endoribonuclease cas2;
PDBTitle: crystal structure of a putative ssrna endonuclease cas2, crispr2 adaptation protein from e.coli
69c2kl6A_
not modelled 16.1 22
PDB header:structural genomics, unknown function
Chain: A: PDB Molecule:uncharacterized protein;
PDBTitle: solution nmr structure of the cardb domain of pf1109 from2 pyrococcus furiosus. northeast structural genomics3 consortium target pfr193a
70c3gasA_
not modelled 15.4 16
PDB header:oxidoreductase
Chain: A: PDB Molecule:heme oxygenase;
PDBTitle: crystal structure of helicobacter pylori heme oxygenase hugz2 in complex with heme
71d1nb4a_
not modelled 15.0 30
Fold:DNA/RNA polymerases
Superfamily:DNA/RNA polymerases
Family:RNA-dependent RNA-polymerase
72c2ol5B_
not modelled 14.5 11
PDB header:transcription regulator
Chain: B: PDB Molecule:pai 2 protein;
PDBTitle: crystal structure of a protease synthase and sporulation negative2 regulatory protein pai 2 from bacillus stearothermophilus
73c3o44G_
not modelled 13.2 38
PDB header:toxin
Chain: G: PDB Molecule:hemolysin;
PDBTitle: crystal structure of the vibrio cholerae cytolysin (hlya) heptameric2 pore
74c5mqrA_
not modelled 12.3 19
PDB header:hydrolase
Chain: A: PDB Molecule:beta-l-arabinobiosidase;
PDBTitle: sialidase bt_1020
75d2foka4
not modelled 12.0 26
Fold:Restriction endonuclease-like
Superfamily:Restriction endonuclease-like
Family:Restriction endonuclease FokI, C-terminal (catalytic) domain
76d1s48a_
not modelled 11.5 20
Fold:DNA/RNA polymerases
Superfamily:DNA/RNA polymerases
Family:RNA-dependent RNA-polymerase
77c5y6rA_
not modelled 11.3 20
PDB header:transferase
Chain: A: PDB Molecule:genome polyprotein;
PDBTitle: crystal structure of csfv ns5b
78c5bncB_
not modelled 11.2 22
PDB header:heme binding protein
Chain: B: PDB Molecule:heme binding protein msmeg_6519;
PDBTitle: structure of heme binding protein msmeg_6519 from mycobacterium2 smegmatis
79c1fokA_
not modelled 11.0 26
PDB header:hydrolase/dna
Chain: A: PDB Molecule:protein (foki restriction endonucleas);
PDBTitle: structure of restriction endonuclease foki bound to dna
80c3k87B_
not modelled 10.8 10
PDB header:oxidoreductase
Chain: B: PDB Molecule:chlorophenol-4-monooxygenase component 1;
PDBTitle: crystal structure of nadh:fad oxidoreductase (tftc) - fad2 complex
81c4p6iB_
not modelled 10.5 28
PDB header:hydrolase
Chain: B: PDB Molecule:crispr-associated endoribonuclease cas2;
PDBTitle: crystal structure of the cas1-cas2 complex from escherichia coli
82c2kd2A_
not modelled 10.3 56
PDB header:apoptosis
Chain: A: PDB Molecule:fas apoptotic inhibitory molecule 1;
PDBTitle: nmr structure of faim-ctd
83c5jzrA_
not modelled 9.4 30
PDB header:viral protein
Chain: A: PDB Molecule:coat protein;
PDBTitle: solid-state mas nmr structure of acinetobacter phage 205 (ap205) coat2 protein in assembled capsid particles
84d1br2a1
not modelled 8.7 45
Fold:SH3-like barrel
Superfamily:Myosin S1 fragment, N-terminal domain
Family:Myosin S1 fragment, N-terminal domain
85c1xezA_
not modelled 8.6 38
PDB header:toxin
Chain: A: PDB Molecule:hemolysin;
PDBTitle: crystal structure of the vibrio cholerae cytolysin (hlya)2 pro-toxin with octylglucoside bound
86c2phcB_
not modelled 7.8 27
PDB header:structural genomics, unknown function
Chain: B: PDB Molecule:uncharacterized protein ph0987;
PDBTitle: crystal structure of conserved uncharacterized protein ph0987 from2 pyrococcus horikoshii
87c5dudB_
not modelled 7.6 40
PDB header:unknown function
Chain: B: PDB Molecule:ybgj;
PDBTitle: crystal structure of e. coli ybgjk
88d1j5ya2
not modelled 7.6 16
Fold:HPr-like
Superfamily:Putative transcriptional regulator TM1602, C-terminal domain
Family:Putative transcriptional regulator TM1602, C-terminal domain
89c1ztgD_
not modelled 6.9 8
PDB header:dna, rna binding protein/dna
Chain: D: PDB Molecule:poly(rc)-binding protein 1;
PDBTitle: human alpha polyc binding protein kh1
90c5l07B_
not modelled 6.6 29
PDB header:transcription
Chain: B: PDB Molecule:quorum-sensing transcriptional activator;
PDBTitle: crystal structure of quorum-sensing transcriptional activator from2 yersinia enterocolitica
91c4zkcA_
not modelled 6.3 36
PDB header:viral protein/cytokine
Chain: A: PDB Molecule:chemokine binding protein;
PDBTitle: the chemokine binding protein of orf virus complexed with ccl7
92c5c2mA_
not modelled 6.2 15
PDB header:structural protein
Chain: A: PDB Molecule:predicted protein;
PDBTitle: the de novo evolutionary emergence of a symmetrical protein is shaped2 by folding constraints
93c5n06A_
not modelled 6.1 21
PDB header:signaling protein
Chain: A: PDB Molecule:tyrosine-protein kinase receptor tie-1;
PDBTitle: crystal structure of tie1 fibronectin-like domain 3
94c5bu6B_
not modelled 6.0 24
PDB header:hydrolase
Chain: B: PDB Molecule:bpsb (pgab), poly-beta-1,6-n-acetyl-d-glucosamine n-
PDBTitle: structure of bpsb deaceylase domain from bordetella bronchiseptica
95d1viga_
not modelled 6.0 16
Fold:Eukaryotic type KH-domain (KH-domain type I)
Superfamily:Eukaryotic type KH-domain (KH-domain type I)
Family:Eukaryotic type KH-domain (KH-domain type I)
96c5mhjA_
not modelled 5.8 27
PDB header:transcription
Chain: A: PDB Molecule:major viral transcription factor icp4;
PDBTitle: icp4 dna-binding domain, lacking intrinsically disordered region, in2 complex with 12mer dna duplex from its own promoter
97c3gl5A_
not modelled 5.5 18
PDB header:structural genomics, unknown function
Chain: A: PDB Molecule:putative dsba oxidoreductase sco1869;
PDBTitle: crystal structure of probable dsba oxidoreductase sco1869 from2 streptomyces coelicolor
98c2zp2B_
not modelled 5.4 47
PDB header:transferase inhibitor
Chain: B: PDB Molecule:kinase a inhibitor;
PDBTitle: c-terminal domain of kipi from bacillus subtilis
99d2phcb1
not modelled 5.3 27
Fold:Cyclophilin-like
Superfamily:Cyclophilin-like
Family:PH0987 C-terminal domain-like

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