Phyre Home Retrieve Phyre Job Id
Emailmdejesus@rockefeller.edu
DescriptionRVBD0444c_(-)_533094_533792
DateTue Jul 23 14:50:52 BST 2019
Unique Job ID3cd8a218732f516b
SequenceMTEHTDFELL ... Download FASTA
Job Typenormal
Job Expiry

Summary 

Top model
Image coloured by rainbow N → C terminus
Model dimensions (Å):X:37.412 Y:41.880 Z:41.779
Model (left) based on template c3vdoB_
Top template information
PDB header:dna binding protein/protein binding
Chain: B: PDB Molecule:anti-sigma-k factor rska;
PDBTitle: structure of extra-cytoplasmic function(ecf) sigma factor sigk in2 complex with its negative regulator rska from mycobacterium3 tuberculosis
Confidence and coverage
Confidence: 99.6% Coverage: 31%
73 residues ( 31% of your sequence) have been modelled with 99.6% confidence by the single highest scoring template.
You may wish to submit your sequence to Phyrealarm. This will automatically scan your sequence every week for new potential templates as they appear in the Phyre2 library.
3D viewing
Interactive 3D view in JSmol
For other options to view your downloaded structure offline see the FAQ

Sequence analysis 

Download FASTA version

Secondary structure and disorder prediction [Show] 

Domain analysis [Show] 

Detailed template information [Hide] 

 

#
Template Alignment Coverage3D Model Confidence
% i.d. Template Information
1c3vdoB_



99.6 100
PDB header:dna binding protein/protein binding
Chain: B: PDB Molecule:anti-sigma-k factor rska;
PDBTitle: structure of extra-cytoplasmic function(ecf) sigma factor sigk in2 complex with its negative regulator rska from mycobacterium3 tuberculosis
2c2z2sD_



99.3 12
PDB header:transcription
Chain: D: PDB Molecule:anti-sigma factor chrr, transcriptional activator chrr;
PDBTitle: crystal structure of rhodobacter sphaeroides sige in complex with the2 anti-sigma chrr
3c5wuqD_



99.1 7
PDB header:metal binding protein
Chain: D: PDB Molecule:anti-sigma-w factor rsiw;
PDBTitle: crystal structure of sigw in complex with its anti-sigma rsiw, a zinc2 binding form
4c5frhA_



98.9 7
PDB header:transcription
Chain: A: PDB Molecule:anti-sigma factor rsra;
PDBTitle: solution structure of oxidised rsra
5c3hugJ_



98.8 16
PDB header:transcription/membrane protein
Chain: J: PDB Molecule:probable conserved membrane protein;
PDBTitle: crystal structure of mycobacterium tuberculosis anti-sigma factor rsla2 in complex with -35 promoter binding domain of sigl
6c5camC_



67.7 29
PDB header:transcription
Chain: C: PDB Molecule:pupr protein;
PDBTitle: crystal structure of the cytoplasmic domain of the pseudomonas putida2 anti-sigma factor pupr (semet)
7d1or7c_



34.4 13
Fold:N-terminal, cytoplasmic domain of anti-sigmaE factor RseA
Superfamily:N-terminal, cytoplasmic domain of anti-sigmaE factor RseA
Family:N-terminal, cytoplasmic domain of anti-sigmaE factor RseA
8c1or7C_



34.4 13
PDB header:transcription
Chain: C: PDB Molecule:sigma-e factor negative regulatory protein;
PDBTitle: crystal structure of escherichia coli sigmae with the cytoplasmic2 domain of its anti-sigma rsea
9c5ee2A_



30.5 38
PDB header:metal transport
Chain: A: PDB Molecule:hemoglobin-haptoglobin-utilization protein;
PDBTitle: the crystal structure of the c-terminal beta-barrel of hpua from2 neisseria gonorrhoeae
10c2mjlA_



22.5 15
PDB header:hydrolase
Chain: A: PDB Molecule:peptidyl-trna hydrolase;
PDBTitle: solution structure of peptidyl-trna hyrolase from vibrio cholerae
11c5j84A_



14.6 9
PDB header:lyase
Chain: A: PDB Molecule:dihydroxy-acid dehydratase;
PDBTitle: crystal structure of l-arabinonate dehydratase in holo-form
12d2ptha_



14.6 18
Fold:Phosphorylase/hydrolase-like
Superfamily:Peptidyl-tRNA hydrolase-like
Family:Peptidyl-tRNA hydrolase-like
13c5ze4A_



13.5 12
PDB header:lyase
Chain: A: PDB Molecule:dihydroxy-acid dehydratase, chloroplastic;
PDBTitle: the structure of holo- structure of dhad complex with [2fe-2s] cluster
14c4jd9B_



12.8 5
PDB header:protein binding
Chain: B: PDB Molecule:14.5 kda salivary protein;
PDBTitle: contact pathway inhibitor from a sand fly
15c5oynB_



11.4 18
PDB header:lyase
Chain: B: PDB Molecule:dehydratase, ilvd/edd family;
PDBTitle: crystal structure of d-xylonate dehydratase in holo-form
16d1j2na_



11.4 22
Fold:Myosin phosphatase inhibitor 17kDa protein, CPI-17
Superfamily:Myosin phosphatase inhibitor 17kDa protein, CPI-17
Family:Myosin phosphatase inhibitor 17kDa protein, CPI-17
17c5ja9D_



11.2 22
PDB header:toxin
Chain: D: PDB Molecule:toxin higb-2;
PDBTitle: crystal structure of the higb2 toxin in complex with nb6
18c5lbmD_



11.2 6
PDB header:transcription
Chain: D: PDB Molecule:transcriptional repressor frmr;
PDBTitle: the asymmetric tetrameric structure of the formaldehyde sensing2 transcriptional repressor frmr from escherichia coli
19d1k5oa_



11.0 22
Fold:Myosin phosphatase inhibitor 17kDa protein, CPI-17
Superfamily:Myosin phosphatase inhibitor 17kDa protein, CPI-17
Family:Myosin phosphatase inhibitor 17kDa protein, CPI-17
20d1wrda1



10.6 5
Fold:Spectrin repeat-like
Superfamily:GAT-like domain
Family:GAT domain
21c4fopA_



not modelled 10.0 18
PDB header:hydrolase
Chain: A: PDB Molecule:peptidyl-trna hydrolase;
PDBTitle: crystal structure of peptidyl-trna hydrolase from acinetobacter2 baumannii at 1.86 a resolution
22d1sq4a_



not modelled 8.7 15
Fold:Double-stranded beta-helix
Superfamily:RmlC-like cupins
Family:YlbA-like
23c4dhwA_



not modelled 8.6 15
PDB header:hydrolase
Chain: A: PDB Molecule:peptidyl-trna hydrolase;
PDBTitle: crystal structure of peptidyl-trna hydrolase from pseudomonas2 aeruginosa with adipic acid at 2.4 angstrom resolution
24d2oqea3



not modelled 8.2 4
Fold:Cystatin-like
Superfamily:Amine oxidase N-terminal region
Family:Amine oxidase N-terminal region
25c4ynhA_



not modelled 7.9 15
PDB header:structural protein
Chain: A: PDB Molecule:spindle assembly abnormal protein 5;
PDBTitle: structure of the c. elegans sas-5 implico dimerization domain
26c1soxB_



not modelled 7.6 32
PDB header:oxidoreductase
Chain: B: PDB Molecule:sulfite oxidase;
PDBTitle: sulfite oxidase from chicken liver
27c5lcyD_



not modelled 7.2 6
PDB header:transcription
Chain: D: PDB Molecule:frmr;
PDBTitle: formaldehyde-responsive regulator frmr e64h variant from salmonella2 enterica serovar typhimurium
28c5zx8A_



not modelled 7.1 21
PDB header:hydrolase
Chain: A: PDB Molecule:peptidyl-trna hydrolase;
PDBTitle: crystal structure of peptidyl-trna hydrolase from thermus thermophilus
29c2zxkB_



not modelled 6.9 10
PDB header:oxidoreductase
Chain: B: PDB Molecule:red chlorophyll catabolite reductase,
PDBTitle: crystal structure of semet-red chlorophyll catabolite2 reductase
30c5n1tM_



not modelled 6.4 14
PDB header:oxidoreductase
Chain: M: PDB Molecule:copc;
PDBTitle: crystal structure of complex between flavocytochrome c and copper2 chaperone copc from t. paradoxus
31c4adzA_



not modelled 6.3 6
PDB header:transcription
Chain: A: PDB Molecule:csor;
PDBTitle: crystal structure of the apo form of a copper-sensitive operon2 regulator (csor) protein from streptomyces lividans
32d1rc6a_



not modelled 5.8 14
Fold:Double-stranded beta-helix
Superfamily:RmlC-like cupins
Family:YlbA-like
33c5u1cA_



not modelled 5.6 13
PDB header:viral protein
Chain: A: PDB Molecule:hiv-1 integrase, sso7d chimera;
PDBTitle: structure of tetrameric hiv-1 strand transfer complex intasome
34c2hh7A_



not modelled 5.5 3
PDB header:unknown function
Chain: A: PDB Molecule:hypothetical protein csor;
PDBTitle: crystal structure of cu(i) bound csor from mycobacterium tuberculosis.
35c2yreA_



not modelled 5.2 15
PDB header:protein binding
Chain: A: PDB Molecule:f-box only protein 30;
PDBTitle: solution structure of the zinc finger domains (1-87) from2 human f-box only protein
36d1aqaa_



not modelled 5.1 21
Fold:Cytochrome b5-like heme/steroid binding domain
Superfamily:Cytochrome b5-like heme/steroid binding domain
Family:Cytochrome b5

Binding site prediction 

Due to computational demand, binding site predictions are not run for batch jobs

If you want to predict binding sites, please manually submit your model of choice to 3DLigandSite

Transmembrane helix prediction 

Transmembrane helices have been predicted in your sequence to adopt the topology shown below