Phyre Home Retrieve Phyre Job Id
Emailmdejesus@rockefeller.edu
DescriptionRVBD0446c_(-)_534448_535218
DateTue Jul 23 14:50:52 BST 2019
Unique Job IDfe31a972d308597f
SequenceVVTSVSALAV ... Download FASTA
Job Typenormal
Job Expiry

Summary 

Top model
Image coloured by rainbow N → C terminus
Model dimensions (Å):X:44.029 Y:41.238 Z:58.526
Model (left) based on template c4a2nB_
Top template information
PDB header:transferase
Chain: B: PDB Molecule:isoprenylcysteine carboxyl methyltransferase;
PDBTitle: crystal structure of ma-icmt
Confidence and coverage
Confidence: 99.9% Coverage: 72%
184 residues ( 72% of your sequence) have been modelled with 99.9% confidence by the single highest scoring template.
Additional confident templates have been detected (see Domain analysis) which cover other regions of your sequence.
246 residues ( 96%) could be modelled at >90% confidence using multiple-templates.
You may wish to try resubmitting your sequence in "intensive" mode to model more of your sequence.
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Sequence analysis 

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Secondary structure and disorder prediction [Show] 

Domain analysis [Show] 

Detailed template information [Hide] 

 

#
Template Alignment Coverage3D Model Confidence
% i.d. Template Information
1c4a2nB_



99.9 12
PDB header:transferase
Chain: B: PDB Molecule:isoprenylcysteine carboxyl methyltransferase;
PDBTitle: crystal structure of ma-icmt
2c4quvB_



99.9 17
PDB header:oxidoreductase, membrane protein
Chain: B: PDB Molecule:delta(14)-sterol reductase;
PDBTitle: structure of an integral membrane delta(14)-sterol reductase
3c5v7pA_



99.9 17
PDB header:transferase
Chain: A: PDB Molecule:protein-s-isoprenylcysteine o-methyltransferase;
PDBTitle: atomic structure of the eukaryotic intramembrane ras methyltransferase2 icmt (isoprenylcysteine carboxyl methyltransferase), in complex with3 a monobody
4c4y9iA_



72.1 25
PDB header:oxidoreductase
Chain: A: PDB Molecule:mycobacterium tuberculosis paralogous family 11;
PDBTitle: structure of f420-h2 dependent reductase (fdr-a) msmeg_2027
5c3r5yC_



68.0 32
PDB header:unknown function
Chain: C: PDB Molecule:putative uncharacterized protein;
PDBTitle: structure of a deazaflavin-dependent nitroreductase from nocardia2 farcinica, with co-factor f420
6c3r5wO_



60.5 21
PDB header:oxidoreductase
Chain: O: PDB Molecule:deazaflavin-dependent nitroreductase;
PDBTitle: structure of ddn, the deazaflavin-dependent nitroreductase from2 mycobacterium tuberculosis involved in bioreductive activation of pa-3 824, with co-factor f420
7c3h96B_



56.2 32
PDB header:flavoprotein
Chain: B: PDB Molecule:f420-h2 dependent reductase a;
PDBTitle: msmeg_3358 f420 reductase
8c3r5zB_



54.6 29
PDB header:unknown function
Chain: B: PDB Molecule:putative uncharacterized protein;
PDBTitle: structure of a deazaflavin-dependent reductase from nocardia2 farcinica, with co-factor f420
9c6hwhX_



46.7 23
PDB header:electron transport
Chain: X: PDB Molecule:cytochrome c oxidase polypeptide 4;
PDBTitle: structure of a functional obligate respiratory supercomplex from2 mycobacterium smegmatis
10c4p63A_



35.8 18
PDB header:transferase
Chain: A: PDB Molecule:probable deoxyhypusine synthase;
PDBTitle: crystal structure of deoxyhypusine synthase from pyrococcus horikoshii
11d1e7la1



32.9 56
Fold:LEM/SAP HeH motif
Superfamily:Recombination endonuclease VII, C-terminal and dimerization domains
Family:Recombination endonuclease VII, C-terminal and dimerization domains
12c6dftJ_



26.6 18
PDB header:transferase
Chain: J: PDB Molecule:deoxyhypusine synthase regulatory subunit;
PDBTitle: trypanosoma brucei deoxyhypusine synthase
13c5ht7A_



24.1 27
PDB header:metal binding protein
Chain: A: PDB Molecule:uncharacterized protein;
PDBTitle: crystal structure of a transition-metal-ion-binding betagamma-2 crystallin from methanosaeta thermophila
14c4hxhC_



23.5 17
PDB header:rna/rna binding protein/hydrolase
Chain: C: PDB Molecule:histone rna hairpin-binding protein;
PDBTitle: structure of mrna stem-loop, human stem-loop binding protein and2 3'hexo ternary complex
15c5e8jC_



22.1 19
PDB header:translation
Chain: C: PDB Molecule:rnmt-activating mini protein;
PDBTitle: crystal structure of mrna cap guanine-n7 methyltransferase in complex2 with ram
16c4q2eA_



16.0 11
PDB header:transferase
Chain: A: PDB Molecule:phosphatidate cytidylyltransferase;
PDBTitle: crystal structure of an intramembrane cdp-dag synthetase central for2 phospholipid biosynthesis (s200c/s258c, active mutant)
17c6cebP_



14.6 30
PDB header:signaling protein
Chain: P: PDB Molecule:insulin receptor;
PDBTitle: insulin receptor ectodomain in complex with two insulin molecules - c12 symmetry
18d1rgoa2



14.5 83
Fold:CCCH zinc finger
Superfamily:CCCH zinc finger
Family:CCCH zinc finger
19c6dftE_



12.7 12
PDB header:transferase
Chain: E: PDB Molecule:deoxyhypusine synthase;
PDBTitle: trypanosoma brucei deoxyhypusine synthase
20d1x9na1



12.0 13
Fold:ATP-dependent DNA ligase DNA-binding domain
Superfamily:ATP-dependent DNA ligase DNA-binding domain
Family:ATP-dependent DNA ligase DNA-binding domain
21d1p3ie_



not modelled 9.4 27
Fold:Histone-fold
Superfamily:Histone-fold
Family:Nucleosome core histones
22d1id3a_



not modelled 9.3 20
Fold:Histone-fold
Superfamily:Histone-fold
Family:Nucleosome core histones
23d2pxyd2



not modelled 9.0 44
Fold:MHC antigen-recognition domain
Superfamily:MHC antigen-recognition domain
Family:MHC antigen-recognition domain
24d1d5mb2



not modelled 8.9 57
Fold:MHC antigen-recognition domain
Superfamily:MHC antigen-recognition domain
Family:MHC antigen-recognition domain
25c5mquA_



not modelled 8.7 33
PDB header:virus
Chain: A: PDB Molecule:vp1;
PDBTitle: crystal structure of bovine enterovirus 2 determined with serial2 femtosecond x-ray crystallography
26d1klub2



not modelled 8.6 57
Fold:MHC antigen-recognition domain
Superfamily:MHC antigen-recognition domain
Family:MHC antigen-recognition domain
27c2klqA_



not modelled 8.6 75
PDB header:replication
Chain: A: PDB Molecule:dna replication licensing factor mcm6;
PDBTitle: the solution structure of cbd of human mcm6
28c4wm8A_



not modelled 8.3 42
PDB header:virus
Chain: A: PDB Molecule:vp1;
PDBTitle: crystal structure of human enterovirus d68
29c5zyoD_



not modelled 8.3 44
PDB header:transferase
Chain: D: PDB Molecule:ribosomal rna large subunit methyltransferase h;
PDBTitle: crystal structure of domain-swapped circular-permuted ybea (cp74) from2 escherichia coli
30c6iijA_



not modelled 8.0 40
PDB header:viral protein
Chain: A: PDB Molecule:vp1;
PDBTitle: cryo-em structure of cv-a10 mature virion
31d1hxs1_



not modelled 7.8 42
Fold:Nucleoplasmin-like/VP (viral coat and capsid proteins)
Superfamily:Positive stranded ssRNA viruses
Family:Picornaviridae-like VP (VP1, VP2, VP3 and VP4)
32d1pvc1_



not modelled 7.8 42
Fold:Nucleoplasmin-like/VP (viral coat and capsid proteins)
Superfamily:Positive stranded ssRNA viruses
Family:Picornaviridae-like VP (VP1, VP2, VP3 and VP4)
33d2fmme1



not modelled 7.6 21
Fold:ENT-like
Superfamily:ENT-like
Family:Emsy N terminal (ENT) domain-like
34d1h8ta_



not modelled 7.6 50
Fold:Nucleoplasmin-like/VP (viral coat and capsid proteins)
Superfamily:Positive stranded ssRNA viruses
Family:Picornaviridae-like VP (VP1, VP2, VP3 and VP4)
35c5lc5m_



not modelled 7.4 13
PDB header:oxidoreductase
Chain: M: PDB Molecule:nadh-ubiquinone oxidoreductase chain 4;
PDBTitle: structure of mammalian respiratory complex i, class2
36d1bx2b2



not modelled 7.4 57
Fold:MHC antigen-recognition domain
Superfamily:MHC antigen-recognition domain
Family:MHC antigen-recognition domain
37d1bev1_



not modelled 7.3 38
Fold:Nucleoplasmin-like/VP (viral coat and capsid proteins)
Superfamily:Positive stranded ssRNA viruses
Family:Picornaviridae-like VP (VP1, VP2, VP3 and VP4)
38d1d4m1_



not modelled 7.2 58
Fold:Nucleoplasmin-like/VP (viral coat and capsid proteins)
Superfamily:Positive stranded ssRNA viruses
Family:Picornaviridae-like VP (VP1, VP2, VP3 and VP4)
39d1cov1_



not modelled 7.0 42
Fold:Nucleoplasmin-like/VP (viral coat and capsid proteins)
Superfamily:Positive stranded ssRNA viruses
Family:Picornaviridae-like VP (VP1, VP2, VP3 and VP4)
40d1dhsa_



not modelled 6.9 13
Fold:DHS-like NAD/FAD-binding domain
Superfamily:DHS-like NAD/FAD-binding domain
Family:Deoxyhypusine synthase, DHS
41c2fmmE_



not modelled 6.8 21
PDB header:transcription
Chain: E: PDB Molecule:protein emsy;
PDBTitle: crystal structure of emsy-hp1 complex
42d1eqzg_



not modelled 6.8 27
Fold:Histone-fold
Superfamily:Histone-fold
Family:Nucleosome core histones
43d1eah1_



not modelled 6.7 42
Fold:Nucleoplasmin-like/VP (viral coat and capsid proteins)
Superfamily:Positive stranded ssRNA viruses
Family:Picornaviridae-like VP (VP1, VP2, VP3 and VP4)
44c3mp7B_



not modelled 6.6 40
PDB header:protein transport
Chain: B: PDB Molecule:preprotein translocase subunit sece;
PDBTitle: lateral opening of a translocon upon entry of protein suggests the2 mechanism of insertion into membranes
45c1z7s1_



not modelled 6.4 42
PDB header:virus
Chain: 1: PDB Molecule:human coxsackievirus a21;
PDB Fragment:viral protein 1; PDBTitle: the crystal structure of coxsackievirus a21
46d1y14b2



not modelled 6.3 67
Fold:Dodecin subunit-like
Superfamily:N-terminal, heterodimerisation domain of RBP7 (RpoE)
Family:N-terminal, heterodimerisation domain of RBP7 (RpoE)
47d2fdbm1



not modelled 6.3 42
Fold:beta-Trefoil
Superfamily:Cytokine
Family:Fibroblast growth factors (FGF)
48d1ev11_



not modelled 6.2 50
Fold:Nucleoplasmin-like/VP (viral coat and capsid proteins)
Superfamily:Positive stranded ssRNA viruses
Family:Picornaviridae-like VP (VP1, VP2, VP3 and VP4)
49c4bipA_



not modelled 6.2 46
PDB header:virus
Chain: A: PDB Molecule:vp1;
PDBTitle: homology model of coxsackievirus a7 (cav7) full capsid proteins.
50d1aym1_



not modelled 6.1 50
Fold:Nucleoplasmin-like/VP (viral coat and capsid proteins)
Superfamily:Positive stranded ssRNA viruses
Family:Picornaviridae-like VP (VP1, VP2, VP3 and VP4)
51c1p58F_



not modelled 5.9 36
PDB header:virus
Chain: F: PDB Molecule:envelope protein m;
PDBTitle: complex organization of dengue virus membrane proteins as revealed by2 9.5 angstrom cryo-em reconstruction
52d1kx5a_



not modelled 5.9 24
Fold:Histone-fold
Superfamily:Histone-fold
Family:Nucleosome core histones
53d1r1a1_



not modelled 5.9 50
Fold:Nucleoplasmin-like/VP (viral coat and capsid proteins)
Superfamily:Positive stranded ssRNA viruses
Family:Picornaviridae-like VP (VP1, VP2, VP3 and VP4)
54c2xp1A_



not modelled 5.8 25
PDB header:transcription
Chain: A: PDB Molecule:spt6;
PDBTitle: structure of the tandem sh2 domains from antonospora locustae2 transcription elongation factor spt6
55c3vbuA_



not modelled 5.7 27
PDB header:virus
Chain: A: PDB Molecule:genome polyprotein, capsid protein vp1;
PDBTitle: crystal structure of empty human enterovirus 71 particle
56c3vbfA_



not modelled 5.6 29
PDB header:virus
Chain: A: PDB Molecule:genome polyprotein, capsid protein vp1;
PDBTitle: crystal structure of formaldehyde treated human enterovirus 71 (space2 group i23)
57d1pov1_



not modelled 5.6 42
Fold:Nucleoplasmin-like/VP (viral coat and capsid proteins)
Superfamily:Positive stranded ssRNA viruses
Family:Picornaviridae-like VP (VP1, VP2, VP3 and VP4)
58c5k0uA_



not modelled 5.6 40
PDB header:virus
Chain: A: PDB Molecule:capsid protein vp1;
PDBTitle: cryoem structure of the full virion of a human rhinovirus c
59c5xtdo_



not modelled 5.6 16
PDB header:oxidoreductase/electron transport
Chain: O: PDB Molecule:nadh dehydrogenase [ubiquinone] flavoprotein 2,
PDBTitle: cryo-em structure of human respiratory complex i
60c4q2gA_



not modelled 5.5 10
PDB header:transferase
Chain: A: PDB Molecule:phosphatidate cytidylyltransferase;
PDBTitle: crystal structure of an intramembrane cdp-dag synthetase central for2 phospholipid biosynthesis (s200c/s223c, inactive mutant)
61c5xs5A_



not modelled 5.3 46
PDB header:virus
Chain: A: PDB Molecule:genome polyprotein;
PDBTitle: structure of coxsackievirus a6 (cva6) virus procapsid particle
62d1rhi1_



not modelled 5.3 27
Fold:Nucleoplasmin-like/VP (viral coat and capsid proteins)
Superfamily:Positive stranded ssRNA viruses
Family:Picornaviridae-like VP (VP1, VP2, VP3 and VP4)
63d1mqta_



not modelled 5.2 50
Fold:Nucleoplasmin-like/VP (viral coat and capsid proteins)
Superfamily:Positive stranded ssRNA viruses
Family:Picornaviridae-like VP (VP1, VP2, VP3 and VP4)
64d1oopa_



not modelled 5.1 50
Fold:Nucleoplasmin-like/VP (viral coat and capsid proteins)
Superfamily:Positive stranded ssRNA viruses
Family:Picornaviridae-like VP (VP1, VP2, VP3 and VP4)
65d1ncqa_



not modelled 5.1 27
Fold:Nucleoplasmin-like/VP (viral coat and capsid proteins)
Superfamily:Positive stranded ssRNA viruses
Family:Picornaviridae-like VP (VP1, VP2, VP3 and VP4)
66c5jzgA_



not modelled 5.0 40
PDB header:virus
Chain: A: PDB Molecule:capsid protein vp1;
PDBTitle: cryoem structure of the native empty particle of a human rhinovirus c

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