Phyre Home Retrieve Phyre Job Id
Emailmdejesus@rockefeller.edu
DescriptionRVBD0448c_(-)_536507_537172
DateTue Jul 23 14:50:52 BST 2019
Unique Job ID3651a83fc730acd9
SequenceVHHSFAYRSY ... Download FASTA
Job Typenormal
Job Expiry

Summary 

Top model
Image coloured by rainbow N → C terminus
Model dimensions (Å):X:27.309 Y:32.136 Z:38.635
Model (left) based on template d1wspa1
Top template information
Fold:beta-Grasp (ubiquitin-like)
Superfamily:Ubiquitin-like
Family:DIX domain
Confidence and coverage
Confidence: 32.4% Coverage: 21%
46 residues ( 21% of your sequence) have been modelled with 32.4% confidence by the single highest scoring template.
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3D viewing
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Sequence analysis 

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Secondary structure and disorder prediction [Show] 

Domain analysis [Show] 

Detailed template information [Hide] 

 

#
Template Alignment Coverage3D Model Confidence
% i.d. Template Information
1d1wspa1



32.4 17
Fold:beta-Grasp (ubiquitin-like)
Superfamily:Ubiquitin-like
Family:DIX domain
2c2vycA_



18.7 11
PDB header:lyase
Chain: A: PDB Molecule:biodegradative arginine decarboxylase;
PDBTitle: crystal structure of acid induced arginine decarboxylase2 from e. coli
3c4xhfD_



17.9 21
PDB header:oxidoreductase
Chain: D: PDB Molecule:na-translocating nadh-quinone reductase subunit c nqrc;
PDBTitle: crystal structure of shewanella oneidensis nqrc
4c6cn0B_



17.1 35
PDB header:transferase
Chain: B: PDB Molecule:16s rrna (guanine(1405)-n(7))-methyltransferase;
PDBTitle: 2.95 angstrom crystal structure of 16s rrna methylase from proteus2 mirabilis
5c3l20A_



13.9 8
PDB header:unknown function
Chain: A: PDB Molecule:putative uncharacterized protein;
PDBTitle: crystal structure of a hypothetical protein from staphylococcus aureus
6d1wxma1



13.0 28
Fold:beta-Grasp (ubiquitin-like)
Superfamily:Ubiquitin-like
Family:Ras-binding domain, RBD
7c3pz7A_



12.7 10
PDB header:signaling protein
Chain: A: PDB Molecule:dixin;
PDBTitle: crystal structure of ccd1-dix domain
8c4e8uA_



12.0 20
PDB header:rna binding protein
Chain: A: PDB Molecule:putative uncharacterized protein t8p19.180;
PDBTitle: crystal structure of arabidopsis idn2 xs domain along with a small2 segment of adjacent coiled-coil region
9d1jg1a_



11.8 16
Fold:S-adenosyl-L-methionine-dependent methyltransferases
Superfamily:S-adenosyl-L-methionine-dependent methyltransferases
Family:Protein-L-isoaspartyl O-methyltransferase
10c2mxqA_



11.6 50
PDB header:antimicrobial protein
Chain: A: PDB Molecule:paneth cell-specific alpha-defensin 1;
PDBTitle: the solution structure of defa1, a highly potent antimicrobial peptide2 from the horse
11d2cs7a1



10.8 67
Fold:IL8-like
Superfamily:PhtA domain-like
Family:PhtA domain-like
12c2jn4A_



10.7 25
PDB header:structural genomics, unknown function
Chain: A: PDB Molecule:hypothetical protein fixu, nift;
PDBTitle: solution nmr structure of protein rp4601 from rhodopseudomonas2 palustris. northeast structural genomics consortium target rpt2;3 ontario center for structural proteomics target rp4601.
13d2jn4a1



10.7 25
Fold:NifT/FixU barrel-like
Superfamily:NifT/FixU-like
Family:NifT/FixU
14c2wshC_



10.6 7
PDB header:hydrolase
Chain: C: PDB Molecule:endonuclease ii;
PDBTitle: structure of bacteriophage t4 endoii e118a mutant
15c6cslA_



10.0 50
PDB header:metal binding protein
Chain: A: PDB Molecule:histidine triad protein d;
PDBTitle: pneumococcal phtd protein 269-339 fragment with bound zn(ii)
16d1u7ia_



9.9 12
Fold:Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase
Superfamily:Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase
Family:3-demethylubiquinone-9 3-methyltransferase
17c3bt3B_



9.4 12
PDB header:structural genomics, unknown function
Chain: B: PDB Molecule:glyoxalase-related enzyme, arac type;
PDBTitle: crystal structure of a glyoxalase-related enzyme from clostridium2 phytofermentans
18c5kkmA_



9.4 57
PDB header:unknown function
Chain: A: PDB Molecule:o2_contryphan_vc1 prepropeptide;
PDBTitle: con-vc11-22
19c1c4kA_



9.2 14
PDB header:lyase
Chain: A: PDB Molecule:protein (ornithine decarboxylase);
PDBTitle: ornithine decarboxylase mutant (gly121tyr)
20c3vg8F_



9.0 32
PDB header:unknown function
Chain: F: PDB Molecule:hypothetical protein tthb210;
PDBTitle: crystal structure of hypothetical protein tthb210 from thermus2 thermophilus hb8
21d1u6la_



not modelled 8.9 8
Fold:Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase
Superfamily:Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase
Family:3-demethylubiquinone-9 3-methyltransferase
22c6eiwD_



not modelled 8.8 29
PDB header:virus
Chain: D: PDB Molecule:minor capsid protein micp;
PDBTitle: sacbrood virus of honeybee empty particle
23d2foka1



not modelled 8.5 42
Fold:DNA/RNA-binding 3-helical bundle
Superfamily:"Winged helix" DNA-binding domain
Family:Restriction endonuclease FokI, N-terminal (recognition) domain
24d1e32a3



not modelled 8.5 27
Fold:Cdc48 domain 2-like
Superfamily:Cdc48 domain 2-like
Family:Cdc48 domain 2-like
25d1m1ha2



not modelled 8.2 15
Fold:Ferredoxin-like
Superfamily:N-utilization substance G protein NusG, N-terminal domain
Family:N-utilization substance G protein NusG, N-terminal domain
26c4pv3D_



not modelled 8.1 19
PDB header:hydrolase
Chain: D: PDB Molecule:l-asparaginase beta subunit;
PDBTitle: crystal structure of potassium-dependent plant-type l-asparaginase2 from phaseolus vulgaris in complex with na+ cations
27c1kriA_



not modelled 8.1 18
PDB header:viral protein
Chain: A: PDB Molecule:vp4;
PDBTitle: nmr solution structures of the rhesus rotavirus vp4 sialic acid2 binding domain without ligand
28d1kqra_



not modelled 8.1 18
Fold:Concanavalin A-like lectins/glucanases
Superfamily:Concanavalin A-like lectins/glucanases
Family:vp4 sialic acid binding domain
29c6eh1D_



not modelled 8.1 29
PDB header:virus
Chain: D: PDB Molecule:minor capsid protein micp;
PDBTitle: sacbrood virus of honeybee - expansion state ii
30c6egvD_



not modelled 8.1 29
PDB header:virus
Chain: D: PDB Molecule:minor capsid protein micp;
PDBTitle: sacbrood virus of honeybee
31c5oypD_



not modelled 8.1 29
PDB header:virus
Chain: D: PDB Molecule:minor capsid protein micp;
PDBTitle: sacbrood virus of honeybee
32c5lsfD_



not modelled 8.1 29
PDB header:virus
Chain: D: PDB Molecule:vp4;
PDBTitle: sacbrood honeybee virus
33c6egxD_



not modelled 8.1 29
PDB header:virus
Chain: D: PDB Molecule:minor capsid protein micp;
PDBTitle: sacbrood virus of honeybee - expansion state i
34c2aenH_



not modelled 7.9 18
PDB header:viral protein
Chain: H: PDB Molecule:outer capsid protein vp4, vp8* core;
PDBTitle: crystal structure of the rotavirus strain ds-1 vp8* core
35c3wz3A_



not modelled 7.8 19
PDB header:unknown function
Chain: A: PDB Molecule:tram protein;
PDBTitle: structure of a periplasmic fragment of tram
36d1mqea_



not modelled 7.8 2
Fold:Nudix
Superfamily:Nudix
Family:MutT-like
37c3oqhB_



not modelled 7.7 50
PDB header:ligase
Chain: B: PDB Molecule:putative uncharacterized protein yvmc;
PDBTitle: crystal structure of b. licheniformis cdps yvmc-blic
38d1qhva_



not modelled 7.6 26
Fold:Virus attachment protein globular domain
Superfamily:Virus attachment protein globular domain
Family:Adenovirus fiber protein "knob" domain
39d1dt9a3



not modelled 7.5 11
Fold:N-terminal domain of eukaryotic peptide chain release factor subunit 1, ERF1
Superfamily:N-terminal domain of eukaryotic peptide chain release factor subunit 1, ERF1
Family:N-terminal domain of eukaryotic peptide chain release factor subunit 1, ERF1
40c5icuA_



not modelled 7.5 19
PDB header:chaperone
Chain: A: PDB Molecule:copc;
PDBTitle: the crystal structure of copc from methylosinus trichosporium ob3b
41c4drvA_



not modelled 7.4 27
PDB header:viral protein
Chain: A: PDB Molecule:outer capsid protein vp4;
PDBTitle: cell attachment protein vp8* of a human rotavirus specifically2 interacts with a-type histo-blood group antigen
42c2q48A_



not modelled 7.4 8
PDB header:structural genomics, unknown function
Chain: A: PDB Molecule:protein at5g48480;
PDBTitle: ensemble refinement of the protein crystal structure of gene product2 from arabidopsis thaliana at5g48480
43d1xy7a_



not modelled 7.4 8
Fold:Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase
Superfamily:Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase
Family:Hypothetical protein At5g48480
44d1kaca_



not modelled 7.2 22
Fold:Virus attachment protein globular domain
Superfamily:Virus attachment protein globular domain
Family:Adenovirus fiber protein "knob" domain
45c6q2zB_



not modelled 7.2 21
PDB header:unknown function
Chain: B: PDB Molecule:upf0339 family protein;
PDBTitle: nmr solution structure of the hvo_2922 protein from haloferax volcanii
46d2o39a1



not modelled 7.2 11
Fold:Virus attachment protein globular domain
Superfamily:Virus attachment protein globular domain
Family:Adenovirus fiber protein "knob" domain
47c2xvsA_



not modelled 7.1 15
PDB header:antitumor protein
Chain: A: PDB Molecule:tetratricopeptide repeat protein 5;
PDBTitle: crystal structure of human ttc5 (strap) c-terminal ob2 domain
48c2n24A_



not modelled 7.1 57
PDB header:toxin
Chain: A: PDB Molecule:o2_contryphan_vc1;
PDBTitle: solution nmr structure of contryphan-vc1
49d1xvsa_



not modelled 7.1 16
Fold:Immunoglobulin-like beta-sandwich
Superfamily:ApaG-like
Family:ApaG-like
50c3omsA_



not modelled 6.8 4
PDB header:transferase
Chain: A: PDB Molecule:phnb protein;
PDBTitle: putative 3-demethylubiquinone-9 3-methyltransferase, phnb protein,2 from bacillus cereus.
51c5hdwA_



not modelled 6.6 17
PDB header:protein binding
Chain: A: PDB Molecule:f-box only protein 3;
PDBTitle: apag domain of fbxo3
52c5lnk2_



not modelled 6.5 21
PDB header:oxidoreductase
Chain: 2: PDB Molecule:mitochondrial complex i, 24 kda subunit;
PDBTitle: entire ovine respiratory complex i
53d1xq4a_



not modelled 6.5 18
Fold:Immunoglobulin-like beta-sandwich
Superfamily:ApaG-like
Family:ApaG-like
54c3fg7A_



not modelled 6.5 19
PDB header:structural protein
Chain: A: PDB Molecule:villin-1;
PDBTitle: the crystal structure of villin domain 6
55d1knba_



not modelled 6.4 15
Fold:Virus attachment protein globular domain
Superfamily:Virus attachment protein globular domain
Family:Adenovirus fiber protein "knob" domain
56c6gcsH_



not modelled 6.3 15
PDB header:oxidoreductase
Chain: H: PDB Molecule:24-kda subunit (nuhm);
PDBTitle: cryo-em structure of respiratory complex i from yarrowia lipolytica
57c4yg3A_



not modelled 6.2 14
PDB header:viral protein
Chain: A: PDB Molecule:outer capsid protein vp4;
PDBTitle: structural basis of glycan recognition in neonate-specific rotaviruses
58c4nvsB_



not modelled 6.2 8
PDB header:unknown function
Chain: B: PDB Molecule:putative enzyme, glyoxalase family;
PDBTitle: crystal structure of the q18cp6_clod6 protein from glyoxalase family.2 northeast structural genomics consortium target cfr3
59d1a0ea_



not modelled 6.2 15
Fold:TIM beta/alpha-barrel
Superfamily:Xylose isomerase-like
Family:Xylose isomerase
60c2mmwA_



not modelled 6.1 13
PDB header:antibiotic
Chain: A: PDB Molecule:microcin j25;
PDBTitle: lasso peptide based integrin inhibitor: microcin j25 variant with rgd2 substitution of gly12-ile13-gly14
61c2l05A_



not modelled 6.1 22
PDB header:transferase
Chain: A: PDB Molecule:serine/threonine-protein kinase b-raf;
PDBTitle: solution nmr structure of the ras-binding domain of serine/threonine-2 protein kinase b-raf from homo sapiens, northeast structural genomics3 consortium target hr4694f
62c5vx8A_



not modelled 6.1 23
PDB header:viral protein
Chain: A: PDB Molecule:outer capsid protein vp4;
PDBTitle: vp8* of p[6] human rotavirus rv3
63c2l99X_



not modelled 6.0 13
PDB header:de novo protein, antimicrobial protein
Chain: X: PDB Molecule:lak160-p10;
PDBTitle: solution structure of lak160-p10
64c4xkmB_



not modelled 6.0 15
PDB header:isomerase
Chain: B: PDB Molecule:xylose isomerase;
PDBTitle: crystal structure of xylose isomerase from an human intestinal tract2 microbe bacteroides thetaiotaomicron
65c2x9qA_



not modelled 6.0 38
PDB header:ligase
Chain: A: PDB Molecule:cyclodipeptide synthetase;
PDBTitle: structure of the mycobacterium tuberculosis protein, rv2275,2 demonstrates that cyclodipeptide synthetases are related3 to type i trna-synthetases.
66d3bida1



not modelled 5.8 21
Fold:YegP-like
Superfamily:YegP-like
Family:YegP-like
67c2q2kA_



not modelled 5.8 14
PDB header:dna binding protein/dna
Chain: A: PDB Molecule:hypothetical protein;
PDBTitle: structure of nucleic-acid binding protein
68c3cncD_



not modelled 5.8 11
PDB header:viral protein
Chain: D: PDB Molecule:fiber protein;
PDBTitle: crystal structure of ad16 fiber knob
69d2k7ia1



not modelled 5.7 26
Fold:YegP-like
Superfamily:YegP-like
Family:YegP-like
70c2k7iB_



not modelled 5.7 26
PDB header:structural genomics, unknown function
Chain: B: PDB Molecule:upf0339 protein atu0232;
PDBTitle: solution nmr structure of protein atu0232 from agrobacterium2 tumefaciens. northeast structural genomics consortium (nesg) target3 att3. ontario center for structural proteomics target atc0223.
71d2j12a1



not modelled 5.7 13
Fold:Virus attachment protein globular domain
Superfamily:Virus attachment protein globular domain
Family:Adenovirus fiber protein "knob" domain
72c4zdtB_



not modelled 5.6 24
PDB header:hydrolase
Chain: B: PDB Molecule:structure-specific endonuclease subunit slx4;
PDBTitle: crystal structure of the ring finger domain of slx1 in complex with2 the c-terminal domain of slx4
73c3htrB_



not modelled 5.6 18
PDB header:structural genomics, unknown function
Chain: B: PDB Molecule:uncharacterized prc-barrel domain protein;
PDBTitle: crystal structure of prc-barrel domain protein from2 rhodopseudomonas palustris
74c6ez3C_



not modelled 5.6 50
PDB header:rna binding protein
Chain: C: PDB Molecule:cyclo(l-leucyl-l-leucyl) synthase;
PDBTitle: structure of cdps from staphylococcus haemolyticus
75c1rrbA_



not modelled 5.5 26
PDB header:transferase
Chain: A: PDB Molecule:raf proto-oncogene serine/threonine-protein
PDBTitle: the ras-binding domain of raf-1 from rat, nmr, 1 structure
76d2fug21



not modelled 5.5 23
Fold:Thioredoxin fold
Superfamily:Thioredoxin-like
Family:NQO2-like
77d1c1yb_



not modelled 5.5 26
Fold:beta-Grasp (ubiquitin-like)
Superfamily:Ubiquitin-like
Family:Ras-binding domain, RBD
78c4gdkA_



not modelled 5.5 26
PDB header:protein binding
Chain: A: PDB Molecule:ubiquitin-like protein atg12;
PDBTitle: crystal structure of human atg12~atg5 conjugate in complex with an n-2 terminal fragment of atg16l1
79c4i0xJ_



not modelled 5.3 32
PDB header:structural genomics, unknown function
Chain: J: PDB Molecule:esat-6-like protein mab_3113;
PDBTitle: crystal structure of the mycobacterum abscessus esxef (mab_3112-2 mab_3113) complex
80d1a0da_



not modelled 5.3 7
Fold:TIM beta/alpha-barrel
Superfamily:Xylose isomerase-like
Family:Xylose isomerase
81c4xl8B_



not modelled 5.2 38
PDB header:viral protein
Chain: B: PDB Molecule:fiber-1;
PDBTitle: crystal structure of human adenovirus 52 short fiber knob in complex2 with 2-o-methyl-5-n-acetylneuraminic acid
82c5yxiA_



not modelled 5.2 19
PDB header:de novo protein
Chain: A: PDB Molecule:drafx6;
PDBTitle: designed protein drafx6
83d1srqa_



not modelled 5.2 21
Fold:Rap/Ran-GAP
Superfamily:Rap/Ran-GAP
Family:Rap/Ran-GAP
84c5fkzE_



not modelled 5.2 21
PDB header:lyase
Chain: E: PDB Molecule:lysine decarboxylase, constitutive;
PDBTitle: structure of e.coli constitutive lysine decarboxylase
85c2i7xA_



not modelled 5.1 17
PDB header:rna binding protein, protein binding
Chain: A: PDB Molecule:protein cft2;
PDBTitle: structure of yeast cpsf-100 (ydh1p)
86d2i7xa1



not modelled 5.1 17
Fold:Metallo-hydrolase/oxidoreductase
Superfamily:Metallo-hydrolase/oxidoreductase
Family:beta-CASP RNA-metabolising hydrolases
87d2rkya1



not modelled 5.1 20
Fold:FnI-like domain
Superfamily:FnI-like domain
Family:Fibronectin type I module
88c1qiuC_



not modelled 5.1 26
PDB header:fibre protein
Chain: C: PDB Molecule:adenovirus fibre;
PDBTitle: a triple beta-spiral in the adenovirus fibre shaft reveals a new2 structural motif for biological fibres

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