Phyre Home Retrieve Phyre Job Id
Emailmdejesus@rockefeller.edu
DescriptionRVBD0451c_(mmpS4)_541491_541913
DateTue Jul 23 14:50:52 BST 2019
Unique Job ID3b627673b93eced9
SequenceVLMRTWIPLV ... Download FASTA
Job Typenormal
Job Expiry

Summary 

Top model
Image coloured by rainbow N → C terminus
Model dimensions (Å):X:31.621 Y:49.881 Z:31.570
Model (left) based on template c2lw3A_
Top template information
PDB header:membrane protein
Chain: A: PDB Molecule:putative membrane protein mmps4;
PDBTitle: solution structure of the soluble domain of mmps4 from mycobacterium2 tuberculosis
Confidence and coverage
Confidence:100.0% Coverage: 64%
89 residues ( 64% of your sequence) have been modelled with 100.0% confidence by the single highest scoring template.
You may wish to submit your sequence to Phyrealarm. This will automatically scan your sequence every week for new potential templates as they appear in the Phyre2 library.
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Sequence analysis 

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Secondary structure and disorder prediction [Show] 

Domain analysis [Show] 

Detailed template information [Hide] 

 

#
Template Alignment Coverage3D Model Confidence
% i.d. Template Information
1c2lw3A_



100.0 100
PDB header:membrane protein
Chain: A: PDB Molecule:putative membrane protein mmps4;
PDBTitle: solution structure of the soluble domain of mmps4 from mycobacterium2 tuberculosis
2d1fv1b1



30.5 9
Fold:Immunoglobulin-like beta-sandwich
Superfamily:Immunoglobulin
Family:C1 set domains (antibody constant domain-like)
3d1ok0a_



26.2 14
Fold:alpha-Amylase inhibitor tendamistat
Superfamily:alpha-Amylase inhibitor tendamistat
Family:alpha-Amylase inhibitor tendamistat
4c2kerA_



23.6 17
PDB header:hydrolase inhibitor
Chain: A: PDB Molecule:alpha-amylase inhibitor z-2685;
PDBTitle: alpha-amylase inhibitor parvulustat (z-2685) from2 streptomyces parvulus
5d1muja1



21.5 11
Fold:Immunoglobulin-like beta-sandwich
Superfamily:Immunoglobulin
Family:C1 set domains (antibody constant domain-like)
6d2cs4a1



21.3 40
Fold:beta-Grasp (ubiquitin-like)
Superfamily:Ubiquitin-like
Family:Ras-binding domain, RBD
7c3osvC_



21.1 7
PDB header:structural protein
Chain: C: PDB Molecule:flagellar basal-body rod modification protein flgd;
PDBTitle: the crytsal structure of flgd from p. aeruginosa
8c2kvzA_



20.1 35
PDB header:structural genomics, unknown function
Chain: A: PDB Molecule:ispe;
PDBTitle: structure of residues 161-235 of putative peptidoglycan binding2 protein lmo0835 from listeria monocytogenes: target lmr64b of the3 northeast structural genomics consortium
9d3d85d2



18.7 17
Fold:Immunoglobulin-like beta-sandwich
Superfamily:Fibronectin type III
Family:Fibronectin type III
10c4ux5B_



18.5 22
PDB header:transcription
Chain: B: PDB Molecule:transcription factor mbp1;
PDBTitle: structure of dna complex of pcg2
11c2amnA_



17.0 50
PDB header:antimicrobial protein
Chain: A: PDB Molecule:cathelicidin;
PDBTitle: solution structure of fowlicidin-1, a novel cathelicidin2 antimicrobial peptide from chicken
12d1d5mb1



16.1 7
Fold:Immunoglobulin-like beta-sandwich
Superfamily:Immunoglobulin
Family:C1 set domains (antibody constant domain-like)
13c5lnkm_



13.4 24
PDB header:oxidoreductase
Chain: M: PDB Molecule:mitochondrial complex i, nd4 subunit;
PDBTitle: entire ovine respiratory complex i
14d1zs8a1



12.8 9
Fold:Immunoglobulin-like beta-sandwich
Superfamily:Immunoglobulin
Family:C1 set domains (antibody constant domain-like)
15d1kska3



12.3 45
Fold:Alpha-L RNA-binding motif
Superfamily:Alpha-L RNA-binding motif
Family:Pseudouridine synthase RsuA N-terminal domain
16d1nkga2



12.0 18
Fold:Galactose-binding domain-like
Superfamily:Galactose-binding domain-like
Family:Rhamnogalacturonase B, RhgB, C-terminal domain
17d2rb6a1



11.9 17
Fold:Sm-like fold
Superfamily:Sm-like ribonucleoproteins
Family:YgdI/YgdR-like
18c2na6B_



10.0 12
PDB header:apoptosis
Chain: B: PDB Molecule:tumor necrosis factor receptor superfamily member 6;
PDBTitle: transmembrane domain of mouse fas/cd95 death receptor
19c2na6C_



10.0 12
PDB header:apoptosis
Chain: C: PDB Molecule:tumor necrosis factor receptor superfamily member 6;
PDBTitle: transmembrane domain of mouse fas/cd95 death receptor
20c2na6A_



10.0 12
PDB header:apoptosis
Chain: A: PDB Molecule:tumor necrosis factor receptor superfamily member 6;
PDBTitle: transmembrane domain of mouse fas/cd95 death receptor
21d1l3ga_



not modelled 9.9 16
Fold:DNA-binding domain of Mlu1-box binding protein MBP1
Superfamily:DNA-binding domain of Mlu1-box binding protein MBP1
Family:DNA-binding domain of Mlu1-box binding protein MBP1
22d1dmla1



not modelled 9.7 17
Fold:DNA clamp
Superfamily:DNA clamp
Family:DNA polymerase processivity factor
23c2nykA_



not modelled 9.5 16
PDB header:viral protein
Chain: A: PDB Molecule:m157;
PDBTitle: crystal structure of m157 from mouse cytomegalovirus
24d1c16a1



not modelled 9.4 15
Fold:Immunoglobulin-like beta-sandwich
Superfamily:Immunoglobulin
Family:C1 set domains (antibody constant domain-like)
25d1ywka1



not modelled 9.2 38
Fold:Double-stranded beta-helix
Superfamily:RmlC-like cupins
Family:KduI-like
26c1q40C_



not modelled 9.2 33
PDB header:translation
Chain: C: PDB Molecule:mrna transport regulator mtr2;
PDBTitle: crystal structure of the c. albicans mtr2-mex67 m domain complex
27c2xkuA_



not modelled 8.9 10
PDB header:immune system
Chain: A: PDB Molecule:beta-2-microglobulin;
PDBTitle: prion-like conversion during amyloid formation at atomic resolution
28c5ee2A_



not modelled 8.6 38
PDB header:metal transport
Chain: A: PDB Molecule:hemoglobin-haptoglobin-utilization protein;
PDBTitle: the crystal structure of the c-terminal beta-barrel of hpua from2 neisseria gonorrhoeae
29c6qe7A_



not modelled 8.6 13
PDB header:sugar binding protein
Chain: A: PDB Molecule:anti-sigma factor domain-containing protein;
PDBTitle: anti-sigma factor domain-containing protein
30d1klub1



not modelled 8.5 8
Fold:Immunoglobulin-like beta-sandwich
Superfamily:Immunoglobulin
Family:C1 set domains (antibody constant domain-like)
31c6ansD_



not modelled 8.4 41
PDB header:unknown function
Chain: D: PDB Molecule:uncharacterized protein;
PDBTitle: crystal structure of a putative uncharacterized protein from2 burkholderia cenocepacia
32c2kt7A_



not modelled 8.2 13
PDB header:cell adhesion, membrane protein
Chain: A: PDB Molecule:putative peptidoglycan bound protein (lpxtg
PDBTitle: solution nmr structure of mucin-binding domain of protein2 lmo0835 from listeria monocytogenes, northeast structural3 genomics consortium target lmr64a
33c2obkE_



not modelled 8.1 37
PDB header:structural genomics, unknown function
Chain: E: PDB Molecule:selt/selw/selh selenoprotein domain;
PDBTitle: x-ray structure of the putative se binding protein from pseudomonas2 fluorescens. northeast structural genomics consortium target plr6.
34d2fa8a1



not modelled 8.1 37
Fold:Thioredoxin fold
Superfamily:Thioredoxin-like
Family:Selenoprotein W-related
35d2ra2a1



not modelled 8.0 33
Fold:Sm-like fold
Superfamily:Sm-like ribonucleoproteins
Family:YgdI/YgdR-like
36c4kw3A_



not modelled 8.0 24
PDB header:viral protein
Chain: A: PDB Molecule:ns1;
PDBTitle: crystal structure of the non-structural protein 1 n-terminal origin-2 recognition/nickase domain from the emerging human bocavirus
37d1jk8a1



not modelled 7.9 9
Fold:Immunoglobulin-like beta-sandwich
Superfamily:Immunoglobulin
Family:C1 set domains (antibody constant domain-like)
38c2k9yA_



not modelled 7.9 42
PDB header:transferase
Chain: A: PDB Molecule:ephrin type-a receptor 2;
PDBTitle: epha2 dimeric structure in the lipidic bicelle at ph 5.0
39c3owrA_



not modelled 7.8 8
PDB header:unknown function
Chain: A: PDB Molecule:uncharacterized hypothetical protein;
PDBTitle: crystal structure of a putative secreted protein (bf4250) from2 bacteroides fragilis nctc 9343 at 1.81 a resolution
40c1ywkE_



not modelled 7.8 38
PDB header:isomerase
Chain: E: PDB Molecule:4-deoxy-l-threo-5-hexosulose-uronate ketol-
PDBTitle: crystal structure of 4-deoxy-1-threo-5-hexosulose-uronate2 ketol-isomerase from enterococcus faecalis
41c2kppA_



not modelled 7.6 30
PDB header:structural genomics, unknown function
Chain: A: PDB Molecule:lin0431 protein;
PDBTitle: solution nmr structure of lin0431 protein from listeria innocua.2 northeast structural genomics consortium target lkr112
42c2yxyA_



not modelled 7.5 37
PDB header:structural genomics, unknown function
Chain: A: PDB Molecule:hypothetical conserved protein, gk0453;
PDBTitle: crystarl structure of hypothetical conserved protein, gk0453
43c5aeoA_



not modelled 7.3 18
PDB header:immune system
Chain: A: PDB Molecule:r. equi vapg protein;
PDBTitle: virulence-associated protein vapg from the intracellular2 pathogen rhodococcus equi
44d2rd1a1



not modelled 7.0 17
Fold:Sm-like fold
Superfamily:Sm-like ribonucleoproteins
Family:YgdI/YgdR-like
45c2k9yB_



not modelled 7.0 42
PDB header:transferase
Chain: B: PDB Molecule:ephrin type-a receptor 2;
PDBTitle: epha2 dimeric structure in the lipidic bicelle at ph 5.0
46c2jmbA_



not modelled 7.0 44
PDB header:structural genomics, unknown function
Chain: A: PDB Molecule:hypothetical protein atu4866;
PDBTitle: solution structure of the protein atu4866 from agrobacterium2 tumefaciens
47d1mhca1



not modelled 7.0 11
Fold:Immunoglobulin-like beta-sandwich
Superfamily:Immunoglobulin
Family:C1 set domains (antibody constant domain-like)
48d1xrua1



not modelled 7.0 63
Fold:Double-stranded beta-helix
Superfamily:RmlC-like cupins
Family:KduI-like
49d1f32a_



not modelled 6.8 45
Fold:Pepsin inhibitor-3
Superfamily:Pepsin inhibitor-3
Family:Pepsin inhibitor-3
50d1kona_



not modelled 6.7 35
Fold:YebC-like
Superfamily:YebC-like
Family:YebC-like
51d1of5b_



not modelled 6.7 27
Fold:Cystatin-like
Superfamily:NTF2-like
Family:NTF2-like
52c2l7yA_



not modelled 6.6 16
PDB header:structural protein
Chain: A: PDB Molecule:putative endo-beta-n-acetylglucosaminidase;
PDBTitle: solution structure of a putative surface protein
53c4csbA_



not modelled 6.5 15
PDB header:unknown function
Chain: A: PDB Molecule:virulence associated protein vapd;
PDBTitle: structure of the virulence-associated protein vapd from the2 intracellular pathogen rhodococcus equi.
54d1eg3a3



not modelled 6.5 33
Fold:WW domain-like
Superfamily:WW domain
Family:WW domain
55d1pkla1



not modelled 6.4 14
Fold:PK beta-barrel domain-like
Superfamily:PK beta-barrel domain-like
Family:Pyruvate kinase beta-barrel domain
56d1tocr2



not modelled 6.4 40
Fold:BPTI-like
Superfamily:BPTI-like
Family:Soft tick anticoagulant proteins
57d1o0va1



not modelled 6.4 9
Fold:Immunoglobulin-like beta-sandwich
Superfamily:Immunoglobulin
Family:C1 set domains (antibody constant domain-like)
58c4cv7A_



not modelled 6.3 15
PDB header:toxin
Chain: A: PDB Molecule:virulence associated protein vapb;
PDBTitle: crystal structure of rhodococcus equi vapb
59d1vlba2



not modelled 6.1 50
Fold:beta-Grasp (ubiquitin-like)
Superfamily:2Fe-2S ferredoxin-like
Family:2Fe-2S ferredoxin domains from multidomain proteins
60d2jn0a1



not modelled 6.0 17
Fold:Sm-like fold
Superfamily:Sm-like ribonucleoproteins
Family:YgdI/YgdR-like
61d1dgja2



not modelled 5.9 50
Fold:beta-Grasp (ubiquitin-like)
Superfamily:2Fe-2S ferredoxin-like
Family:2Fe-2S ferredoxin domains from multidomain proteins
62c5o31b_



not modelled 5.9 24
PDB header:oxidoreductase
Chain: B: PDB Molecule:nadh dehydrogenase [ubiquinone] iron-sulfur protein 7,
PDBTitle: mitochondrial complex i in the deactive state
63c5lc5b_



not modelled 5.9 24
PDB header:oxidoreductase
Chain: B: PDB Molecule:nadh dehydrogenase [ubiquinone] iron-sulfur protein 7,
PDBTitle: structure of mammalian respiratory complex i, class2
64d1n6za_



not modelled 5.8 33
Fold:Hypothetical protein Yml108w
Superfamily:Hypothetical protein Yml108w
Family:Hypothetical protein Yml108w
65d2gpia1



not modelled 5.7 24
Fold:Shew3726-like
Superfamily:Shew3726-like
Family:Shew3726-like
66d1a3xa1



not modelled 5.6 11
Fold:PK beta-barrel domain-like
Superfamily:PK beta-barrel domain-like
Family:Pyruvate kinase beta-barrel domain
67d1lk2a1



not modelled 5.6 12
Fold:Immunoglobulin-like beta-sandwich
Superfamily:Immunoglobulin
Family:C1 set domains (antibody constant domain-like)
68d1sawa_



not modelled 5.6 19
Fold:FAH
Superfamily:FAH
Family:FAH
69c4gdzA_



not modelled 5.6 26
PDB header:structural genomics, unknown function
Chain: A: PDB Molecule:uncharacterized protein;
PDBTitle: crystal structure of a duf4251 family protein (bacegg_02002) from2 bacteroides eggerthii dsm 20697 at 1.95 a resolution
70d1xtda2



not modelled 5.3 21
Fold:OB-fold
Superfamily:Nucleic acid-binding proteins
Family:Cold shock DNA-binding domain-like
71d1lfpa_



not modelled 5.3 22
Fold:YebC-like
Superfamily:YebC-like
Family:YebC-like
72c2p0gB_



not modelled 5.3 21
PDB header:structural genomics, unknown function
Chain: B: PDB Molecule:selenoprotein w-related protein;
PDBTitle: crystal structure of selenoprotein w-related protein from vibrio2 cholerae. northeast structural genomics target vcr75
73c3mk7F_



not modelled 5.2 9
PDB header:oxidoreductase
Chain: F: PDB Molecule:cytochrome c oxidase, cbb3-type, subunit p;
PDBTitle: the structure of cbb3 cytochrome oxidase
74c3rolA_



not modelled 5.1 16
PDB header:immune system
Chain: A: PDB Molecule:h-2 class i histocompatibility antigen, k-b alpha chain;
PDBTitle: murine class i major histocompatibility complex h-2kb in complex with2 post-translationally modified lcmv-derived gp34-41 peptide,3 comprising a nitrotyrosine at position 3

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