Phyre Home Retrieve Phyre Job Id
Emailmdejesus@rockefeller.edu
DescriptionRVBD0456A_(-)_547079_547360
DateTue Jul 23 14:50:53 BST 2019
Unique Job IDab7cfd2e2ec9e584
SequenceMLRGEIWQVD ... Download FASTA
Job Typenormal
Job Expiry

Summary 

Top model
Image coloured by rainbow N → C terminus
Model dimensions (Å):X:29.058 Y:32.557 Z:49.980
Model (left) based on template d1m1fa_
Top template information
Fold:SH3-like barrel
Superfamily:Cell growth inhibitor/plasmid maintenance toxic component
Family:Kid/PemK
Confidence and coverage
Confidence:100.0% Coverage: 89%
83 residues ( 89% of your sequence) have been modelled with 100.0% confidence by the single highest scoring template.
3D viewing
Interactive 3D view in JSmol
For other options to view your downloaded structure offline see the FAQ

Sequence analysis 

Download FASTA version

Secondary structure and disorder prediction [Show] 

Domain analysis [Show] 

Detailed template information [Hide] 

 

#
Template Alignment Coverage3D Model Confidence
% i.d. Template Information
1d1m1fa_



100.0 33
Fold:SH3-like barrel
Superfamily:Cell growth inhibitor/plasmid maintenance toxic component
Family:Kid/PemK
2c5hjzA_



100.0 60
PDB header:hydrolase/rna
Chain: A: PDB Molecule:endoribonuclease mazf9;
PDBTitle: structure of m. tuberculosis mazf-mt1 (rv2801c) in complex with rna
3c4mzpC_



100.0 25
PDB header:hydrolase
Chain: C: PDB Molecule:mazf mrna interferase;
PDBTitle: mazf from s. aureus crystal form iii, c2221, 2.7 a
4d1ne8a_



99.9 24
Fold:SH3-like barrel
Superfamily:Cell growth inhibitor/plasmid maintenance toxic component
Family:Kid/PemK
5d1ub4a_



99.9 30
Fold:SH3-like barrel
Superfamily:Cell growth inhibitor/plasmid maintenance toxic component
Family:Kid/PemK
6c5hk3B_



99.9 29
PDB header:hydrolase/dna
Chain: B: PDB Molecule:endoribonuclease mazf6;
PDBTitle: crystal structure of m. tuberculosis mazf-mt3 t52d-f62d mutant in2 complex with dna
7c5xe3B_



99.9 32
PDB header:hydrolase/antitoxin
Chain: B: PDB Molecule:endoribonuclease mazf4;
PDBTitle: endoribonuclease in complex with its cognate antitoxin from2 mycobacterial species
8c5wygC_



99.9 33
PDB header:hydrolase
Chain: C: PDB Molecule:probable endoribonuclease mazf7;
PDBTitle: the crystal structure of the apo form of mtb mazf
9c5ccaA_



99.8 17
PDB header:hydrolase
Chain: A: PDB Molecule:endoribonuclease mazf3;
PDBTitle: crystal structure of mtb toxin
10c3jrzA_



89.2 16
PDB header:toxin
Chain: A: PDB Molecule:ccdb;
PDBTitle: ccdbvfi-formii-ph5.6
11d3vuba_



66.1 14
Fold:SH3-like barrel
Superfamily:Cell growth inhibitor/plasmid maintenance toxic component
Family:CcdB
12c5ikjA_



59.8 38
PDB header:transcription
Chain: A: PDB Molecule:cryptic loci regulator 2;
PDBTitle: structure of clr2 bound to the clr1 c-terminus
13c3mxuA_



41.5 29
PDB header:oxidoreductase
Chain: A: PDB Molecule:glycine cleavage system h protein;
PDBTitle: crystal structure of glycine cleavage system protein h from bartonella2 henselae
14c6n1bA_



39.3 16
PDB header:hydrolase
Chain: A: PDB Molecule:carbohydrate-binding protein;
PDBTitle: crystal structure of an n-acetylgalactosamine deacetylase from f.2 plautii in complex with blood group b trisaccharide
15c2edgA_



35.1 17
PDB header:biosynthetic protein
Chain: A: PDB Molecule:glycine cleavage system h protein;
PDBTitle: solution structure of the gcv_h domain from mouse glycine
16d1onla_



30.3 25
Fold:Barrel-sandwich hybrid
Superfamily:Single hybrid motif
Family:Biotinyl/lipoyl-carrier proteins and domains
17d1okja2



29.8 11
Fold:Ribonuclease H-like motif
Superfamily:Actin-like ATPase domain
Family:YeaZ-like
18c3a8jF_



26.8 25
PDB header:transferase/transport protein
Chain: F: PDB Molecule:glycine cleavage system h protein;
PDBTitle: crystal structure of et-ehred complex
19c2vhmI_



26.4 14
PDB header:ribosome
Chain: I: PDB Molecule:50s ribosomal protein l11;
PDBTitle: structure of pdf binding helix in complex with the ribosome2 (part 1 of 4)
20d1hpca_



22.8 29
Fold:Barrel-sandwich hybrid
Superfamily:Single hybrid motif
Family:Biotinyl/lipoyl-carrier proteins and domains
21c3cjqB_



not modelled 22.6 14
PDB header:transferase/ribosomal protein
Chain: B: PDB Molecule:50s ribosomal protein l11;
PDBTitle: ribosomal protein l11 methyltransferase (prma) in complex with2 dimethylated ribosomal protein l11 in space group p212121
22c3iftA_



not modelled 22.0 29
PDB header:oxidoreductase
Chain: A: PDB Molecule:glycine cleavage system h protein;
PDBTitle: crystal structure of glycine cleavage system protein h from2 mycobacterium tuberculosis, using x-rays from the compact light3 source.
23c2ftcG_



not modelled 21.5 11
PDB header:ribosome
Chain: G: PDB Molecule:39s ribosomal protein l11, mitochondrial;
PDBTitle: structural model for the large subunit of the mammalian mitochondrial2 ribosome
24c3j21H_



not modelled 21.3 19
PDB header:ribosome
Chain: H: PDB Molecule:50s ribosomal protein l11p;
PDBTitle: promiscuous behavior of proteins in archaeal ribosomes revealed by2 cryo-em: implications for evolution of eukaryotic ribosomes (50s3 ribosomal proteins)
25d1ex0a1



not modelled 17.9 21
Fold:Immunoglobulin-like beta-sandwich
Superfamily:E set domains
Family:Transglutaminase N-terminal domain
26c1vw4V_



not modelled 16.4 15
PDB header:ribosome
Chain: V: PDB Molecule:54s ribosomal protein l36, mitochondrial;
PDBTitle: structure of the yeast mitochondrial large ribosomal subunit
27c1l1kA_



not modelled 15.9 14
PDB header:protein binding
Chain: A: PDB Molecule:barstar;
PDBTitle: nmr identification and characterization of the flexible2 regions in the 160 kd molten globule-like aggregate of3 barstar at low ph
28d2daqa1



not modelled 13.4 21
Fold:SH3-like barrel
Superfamily:Tudor/PWWP/MBT
Family:PWWP domain
29c2fqpD_



not modelled 11.9 14
PDB header:metal binding protein
Chain: D: PDB Molecule:hypothetical protein bp2299;
PDBTitle: crystal structure of a cupin domain (bp2299) from bordetella pertussis2 tohama i at 1.80 a resolution
30c1cffB_



not modelled 10.5 30
PDB header:calmodulin
Chain: B: PDB Molecule:calcium pump;
PDBTitle: nmr solution structure of a complex of calmodulin with a binding2 peptide of the ca2+-pump
31c1jqmA_



not modelled 9.8 23
PDB header:ribosome
Chain: A: PDB Molecule:50s ribosomal protein l11;
PDBTitle: fitting of l11 protein and elongation factor g (ef-g) in2 the cryo-em map of e. coli 70s ribosome bound with ef-g,3 gdp and fusidic acid
32c1vowJ_



not modelled 8.7 13
PDB header:ribosome
Chain: J: PDB Molecule:50s ribosomal protein l11;
PDBTitle: crystal structure of five 70s ribosomes from escherichia coli in2 complex with protein y. this file contains the 50s subunit of one 70s3 ribosome. the entire crystal structure contains five 70s ribosomes4 and is described in remark 400.
33c4mnoA_



not modelled 8.5 18
PDB header:translation
Chain: A: PDB Molecule:translation initiation factor 1a;
PDBTitle: crystal structure of aif1a from pyrococcus abyssi
34c3d55A_



not modelled 8.5 31
PDB header:toxin inhibitor
Chain: A: PDB Molecule:uncharacterized protein rv3357/mt3465;
PDBTitle: crystal structure of m. tuberculosis yefm antitoxin
35c5o60J_



not modelled 8.1 20
PDB header:ribosome
Chain: J: PDB Molecule:50s ribosomal protein l11;
PDBTitle: structure of the 50s large ribosomal subunit from mycobacterium2 smegmatis
36c4p7xA_



not modelled 7.9 29
PDB header:oxidoreductase
Chain: A: PDB Molecule:l-proline cis-4-hydroxylase;
PDBTitle: l-pipecolic acid-bound l-proline cis-4-hydroxylase
37c5a35A_



not modelled 7.8 9
PDB header:transport protein
Chain: A: PDB Molecule:glycine cleavage system h protein;
PDBTitle: crystal structure of glycine cleavage protein h-like (gcvh-l)2 from streptococcus pyogenes
38c2jysA_



not modelled 7.6 0
PDB header:hydrolase
Chain: A: PDB Molecule:protease/reverse transcriptase;
PDBTitle: solution structure of simian foamy virus (mac) protease
39d2gycg2



not modelled 7.5 15
Fold:Ribosomal L11/L12e N-terminal domain
Superfamily:Ribosomal L11/L12e N-terminal domain
Family:Ribosomal L11/L12e N-terminal domain
40c2wseE_



not modelled 7.4 17
PDB header:photosynthesis
Chain: E: PDB Molecule:photosystem i reaction center subunit iv a, chloroplastic;
PDBTitle: improved model of plant photosystem i
41c3bboK_



not modelled 7.2 24
PDB header:ribosome
Chain: K: PDB Molecule:ribosomal protein l11;
PDBTitle: homology model for the spinach chloroplast 50s subunit fitted to 9.4a2 cryo-em map of the 70s chlororibosome
42c4rmoA_



not modelled 7.1 24
PDB header:toxin/rna
Chain: A: PDB Molecule:cptn toxin;
PDBTitle: crystal structure of the cptin type iii toxin-antitoxin system from2 eubacterium rectale
43c3oeiB_



not modelled 7.1 31
PDB header:toxin, protein binding
Chain: B: PDB Molecule:relj (antitoxin rv3357);
PDBTitle: crystal structure of mycobacterium tuberculosis reljk (rv3357-rv3358-2 relbe3)
44d1zaka2



not modelled 6.2 21
Fold:Rubredoxin-like
Superfamily:Microbial and mitochondrial ADK, insert "zinc finger" domain
Family:Microbial and mitochondrial ADK, insert "zinc finger" domain
45c3cezA_



not modelled 6.1 19
PDB header:oxidoreductase
Chain: A: PDB Molecule:methionine-r-sulfoxide reductase;
PDBTitle: crystal structure of methionine-r-sulfoxide reductase from2 burkholderia pseudomallei
46c2ka7A_



not modelled 6.0 25
PDB header:structural genomics, unknown function
Chain: A: PDB Molecule:glycine cleavage system h protein;
PDBTitle: nmr solution structure of tm0212 at 40 c
47c1s1iK_



not modelled 5.7 11
PDB header:ribosome
Chain: K: PDB Molecule:60s ribosomal protein l12;
PDBTitle: structure of the ribosomal 80s-eef2-sordarin complex from yeast2 obtained by docking atomic models for rna and protein components into3 a 11.7 a cryo-em map. this file, 1s1i, contains 60s subunit. the 40s4 ribosomal subunit is in file 1s1h.
48c2dgyA_



not modelled 5.6 40
PDB header:translation
Chain: A: PDB Molecule:mgc11102 protein;
PDBTitle: solution structure of the eukaryotic initiation factor 1a2 in mgc11102 protein
49c5cuzA_



not modelled 5.4 29
PDB header:chaperone
Chain: A: PDB Molecule:methylmalonic aciduria and homocystinuria type d protein,
PDBTitle: crystal structure of semet-substituted n-terminal truncated human b12-2 chaperone cbld (108-296)

Binding site prediction 

Due to computational demand, binding site predictions are not run for batch jobs

If you want to predict binding sites, please manually submit your model of choice to 3DLigandSite