Phyre Home Retrieve Phyre Job Id
Emailmdejesus@rockefeller.edu
DescriptionRVBD0459_(-)_551201_551692
DateTue Jul 23 14:50:54 BST 2019
Unique Job IDd128c4792c78c808
SequenceMNAPAGVLIT ... Download FASTA
Job Typenormal
Job Expiry

Summary 

Top model
Image coloured by rainbow N → C terminus
Model dimensions (Å):X:38.701 Y:38.132 Z:34.016
Model (left) based on template c2apnA_
Top template information
PDB header:structural genomics, unknown function
Chain: A: PDB Molecule:protein hi1723;
PDBTitle: hi1723 solution structure
Confidence and coverage
Confidence: 98.3% Coverage: 56%
91 residues ( 56% of your sequence) have been modelled with 98.3% confidence by the single highest scoring template.
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Sequence analysis 

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Domain analysis [Show] 

Detailed template information [Hide] 

 

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Template Alignment Coverage3D Model Confidence
% i.d. Template Information
1c2apnA_



98.3 20
PDB header:structural genomics, unknown function
Chain: A: PDB Molecule:protein hi1723;
PDBTitle: hi1723 solution structure
2d1s98a_



97.7 22
Fold:HesB-like domain
Superfamily:HesB-like domain
Family:HesB-like domain
3c2d2aA_



97.5 17
PDB header:metal transport
Chain: A: PDB Molecule:sufa protein;
PDBTitle: crystal structure of escherichia coli sufa involved in biosynthesis of2 iron-sulfur clusters
4d1nwba_



97.3 25
Fold:HesB-like domain
Superfamily:HesB-like domain
Family:HesB-like domain
5c1x0gA_



96.4 20
PDB header:metal binding protein
Chain: A: PDB Molecule:isca;
PDBTitle: crystal structure of isca with the [2fe-2s] cluster
6c2k4zA_



95.5 16
PDB header:structural genomics, unknown function
Chain: A: PDB Molecule:dsrr;
PDBTitle: solution nmr structure of allochromatium vinosum dsrr:2 northeast structural genomics consortium target op5
7c2qgoA_



89.5 17
PDB header:biosynthetic protein
Chain: A: PDB Molecule:putative fe-s biosynthesis protein;
PDBTitle: crystal structure of a putative fe-s biosynthesis protein from2 lactobacillus acidophilus
8d2p2ea1



84.2 17
Fold:HesB-like domain
Superfamily:HesB-like domain
Family:HesB-like domain
9c6imnB_



52.0 24
PDB header:ligase/dna
Chain: B: PDB Molecule:dna ligase;
PDBTitle: the crystal structure of asfvlig:ct2 complex
10c6hqzB_



44.6 56
PDB header:hydrolase
Chain: B: PDB Molecule:avrrpt2;
PDBTitle: crystal structure of the type iii effector protein avrrpt2 from2 erwinia amylovora, a c70 family cysteine protease
11d1umya_



41.4 75
Fold:TIM beta/alpha-barrel
Superfamily:Homocysteine S-methyltransferase
Family:Homocysteine S-methyltransferase
12c4cczA_



38.6 88
PDB header:transferase
Chain: A: PDB Molecule:methionine synthase;
PDBTitle: crystal structure of human 5-methyltetrahydrofolate-homocysteine2 methyltransferase, the homocysteine and folate binding domains
13d3bofa2



38.6 75
Fold:TIM beta/alpha-barrel
Superfamily:Homocysteine S-methyltransferase
Family:Homocysteine S-methyltransferase
14d1lt7a_



36.9 75
Fold:TIM beta/alpha-barrel
Superfamily:Homocysteine S-methyltransferase
Family:Homocysteine S-methyltransferase
15c3bolB_



32.9 75
PDB header:transferase
Chain: B: PDB Molecule:5-methyltetrahydrofolate s-homocysteine
PDBTitle: cobalamin-dependent methionine synthase (1-566) from2 thermotoga maritima complexed with zn2+
16c1pjcA_



32.4 22
PDB header:oxidoreductase
Chain: A: PDB Molecule:protein (l-alanine dehydrogenase);
PDBTitle: l-alanine dehydrogenase complexed with nad
17c2ab9A_



32.2 43
PDB header:hydrolase inhibitor
Chain: A: PDB Molecule:pro-sfti-1;
PDBTitle: discovery, structural determination and processing of the2 precursor protein that produces the cyclic trypsin3 inhibitor sfti-1
18c6hpfA_



28.5 28
PDB header:hydrolase
Chain: A: PDB Molecule:endo-b-mannanase;
PDBTitle: structure of inactive e165q mutant of fungal non-cbm carrying gh262 endo-b-mannanase from yunnania penicillata in complex with alpha-62-3 61-di-galactosyl-mannotriose
19c2wbrA_



27.4 50
PDB header:dna-binding protein
Chain: A: PDB Molecule:gw182;
PDBTitle: the rrm domain in gw182 proteins contributes to mirna-2 mediated gene silencing
20d2ihta1



25.8 15
Fold:DHS-like NAD/FAD-binding domain
Superfamily:DHS-like NAD/FAD-binding domain
Family:Pyruvate oxidase and decarboxylase, middle domain
21d2c5sa2



not modelled 21.7 22
Fold:THUMP domain
Superfamily:THUMP domain-like
Family:THUMP domain
22c2bruB_



not modelled 18.6 19
PDB header:oxidoreductase
Chain: B: PDB Molecule:nad(p) transhydrogenase subunit alpha;
PDBTitle: complex of the domain i and domain iii of escherichia coli2 transhydrogenase
23c4dioB_



not modelled 17.6 18
PDB header:oxidoreductase
Chain: B: PDB Molecule:nad(p) transhydrogenase subunit alpha part 1;
PDBTitle: the crystal structure of transhydrogenase from sinorhizobium meliloti
24d1o1ya_



not modelled 16.5 12
Fold:Flavodoxin-like
Superfamily:Class I glutamine amidotransferase-like
Family:Class I glutamine amidotransferases (GAT)
25c1l7eC_



not modelled 14.4 23
PDB header:oxidoreductase
Chain: C: PDB Molecule:nicotinamide nucleotide transhydrogenase,
PDBTitle: crystal structure of r. rubrum transhydrogenase domain i2 with bound nadh
26c6hf4A_



not modelled 12.2 17
PDB header:hydrolase
Chain: A: PDB Molecule:glycosyl hydrolase family 26;
PDBTitle: the structure of boman26b, a gh26 beta-mannanase from bacteroides2 ovatus, complexed with g1m4
27c2vx6A_



not modelled 12.2 30
PDB header:hydrolase
Chain: A: PDB Molecule:cellvibrio japonicus mannanase cjman26c;
PDBTitle: cellvibrio japonicus mannanase cjman26c gal1man4-bound form
28c4izhA_



not modelled 11.7 19
PDB header:oxidoreductase
Chain: A: PDB Molecule:nad/nadp transhydrogenase alpha subunit 1;
PDBTitle: crystal structure of the alpha1 dimer of thermus thermophilus2 transhydrogenase in p6
29c4i5wA_



not modelled 11.1 23
PDB header:transferase
Chain: A: PDB Molecule:5',5'''-p-1,p-4-tetraphosphate phosphorylase 2;
PDBTitle: crystal structure of yeast ap4a phosphorylase apa2 in complex with amp
30d1pjca1



not modelled 11.1 22
Fold:NAD(P)-binding Rossmann-fold domains
Superfamily:NAD(P)-binding Rossmann-fold domains
Family:Formate/glycerate dehydrogenases, NAD-domain
31d2as0a1



not modelled 11.0 17
Fold:PUA domain-like
Superfamily:PUA domain-like
Family:Hypothetical RNA methyltransferase domain (HRMD)
32c5iauD_



not modelled 10.7 20
PDB header:hydrolase
Chain: D: PDB Molecule:dipeptidase;
PDBTitle: a c69-family cysteine dipeptidase from lactobacillus farciminis
33c2oq2B_



not modelled 10.4 8
PDB header:oxidoreductase
Chain: B: PDB Molecule:phosphoadenosine phosphosulfate reductase;
PDBTitle: crystal structure of yeast paps reductase with pap, a product complex
34d1rfsa_



not modelled 10.4 26
Fold:ISP domain
Superfamily:ISP domain
Family:Rieske iron-sulfur protein (ISP)
35c5z1vB_



not modelled 10.3 26
PDB header:unknown function
Chain: B: PDB Molecule:avrpib protein;
PDBTitle: crystal structure of avrpib
36d1oqka_



not modelled 10.3 25
Fold:Rof/RNase P subunit-like
Superfamily:Rof/RNase P subunit-like
Family:RNase P subunit p29-like
37c3wdrA_



not modelled 10.1 17
PDB header:hydrolase
Chain: A: PDB Molecule:beta-mannanase;
PDBTitle: crystal structure of beta-mannanase from a symbiotic protist of the2 termite reticulitermes speratus complexed with gluco-manno-3 oligosaccharide
38c5vitC_



not modelled 9.8 39
PDB header:transferase
Chain: C: PDB Molecule:mdcc;
PDBTitle: crystal structure of a pseudomonas malonate decarboxylase hetero-2 tetramer in complex with malonate
39c2n3pA_



not modelled 9.7 78
PDB header:toxin
Chain: A: PDB Molecule:asteropsin_g;
PDBTitle: solution nmr structure of asteropsin g from marine sponge asteropus
40c3d4oA_



not modelled 9.6 17
PDB header:oxidoreductase
Chain: A: PDB Molecule:dipicolinate synthase subunit a;
PDBTitle: crystal structure of dipicolinate synthase subunit a (np_243269.1)2 from bacillus halodurans at 2.10 a resolution
41d1tj1a1



not modelled 9.5 26
Fold:N-terminal domain of bifunctional PutA protein
Superfamily:N-terminal domain of bifunctional PutA protein
Family:N-terminal domain of bifunctional PutA protein
42c5lc0B_



not modelled 9.3 32
PDB header:hydrolase
Chain: B: PDB Molecule:ns2b-ns3 protease,ns2b-ns3 protease;
PDBTitle: crystal structure of zika virus ns2b-ns3 protease in complex with a2 boronate inhibitor
43c5zr1F_



not modelled 9.2 33
PDB header:dna binding protein/dna
Chain: F: PDB Molecule:origin recognition complex subunit 6;
PDBTitle: saccharomyces cerevisiae origin recognition complex bound to a 72-bp2 origin dna containing acs and b1 element
44c1p1pA_



not modelled 9.1 75
PDB header:neurotoxin
Chain: A: PDB Molecule:aa-conotoxin piva;
PDBTitle: [pro7,13] aa-conotoxin piva, nmr, 12 structures
45d1q90c_



not modelled 9.1 23
Fold:ISP domain
Superfamily:ISP domain
Family:Rieske iron-sulfur protein (ISP)
46c4narA_



not modelled 9.1 28
PDB header:isomerase
Chain: A: PDB Molecule:putative uronate isomerase;
PDBTitle: crystal structure of the q9wys3 protein from thermotoga maritima.2 northeast structural genomics consortium target vr152
47d2bvya2



not modelled 8.9 35
Fold:TIM beta/alpha-barrel
Superfamily:(Trans)glycosidases
Family:beta-glycanases
48d1l0wa2



not modelled 8.8 25
Fold:DCoH-like
Superfamily:GAD domain-like
Family:GAD domain
49c2imgA_



not modelled 8.7 15
PDB header:hydrolase
Chain: A: PDB Molecule:dual specificity protein phosphatase 23;
PDBTitle: crystal structure of dual specificity protein phosphatase2 23 from homo sapiens in complex with ligand malate ion
50c2v45A_



not modelled 8.6 30
PDB header:oxidoreductase
Chain: A: PDB Molecule:periplasmic nitrate reductase;
PDBTitle: a new catalytic mechanism of periplasmic nitrate reductase2 from desulfovibrio desulfuricans atcc 27774 from3 crystallographic and epr data and based on detailed4 analysis of the sixth ligand
51c4o8jB_



not modelled 8.5 33
PDB header:ligase/rna
Chain: B: PDB Molecule:rna 3'-terminal phosphate cyclase;
PDBTitle: crystal structure of rtca, the rna 3'-terminal phosphate cyclase from2 pyrococcus horikoshii, in complex with racaaa3'phosphate and adenine.
52c4uobA_



not modelled 8.1 17
PDB header:lyase
Chain: A: PDB Molecule:endonuclease iii-3;
PDBTitle: crystal structure of deinococcus radiodurans endonuclease iii-3
53d2i74a1



not modelled 7.6 75
Fold:Galactose-binding domain-like
Superfamily:Galactose-binding domain-like
Family:Extended PAW domain
54d2iv2x2



not modelled 7.6 19
Fold:Formate dehydrogenase/DMSO reductase, domains 1-3
Superfamily:Formate dehydrogenase/DMSO reductase, domains 1-3
Family:Formate dehydrogenase/DMSO reductase, domains 1-3
55d1qkia2



not modelled 7.5 16
Fold:FwdE/GAPDH domain-like
Superfamily:Glyceraldehyde-3-phosphate dehydrogenase-like, C-terminal domain
Family:Glucose 6-phosphate dehydrogenase-like
56c3q3uA_



not modelled 7.4 59
PDB header:oxidoreductase
Chain: A: PDB Molecule:lignin peroxidase;
PDBTitle: trametes cervina lignin peroxidase
57c4o1rA_



not modelled 7.4 16
PDB header:splicing
Chain: A: PDB Molecule:replicative dna helicase;
PDBTitle: crystal structure of npudnab intein
58c1bqfA_



not modelled 7.4 71
PDB header:hormone/growth factor
Chain: A: PDB Molecule:protein (growth-blocking peptide);
PDBTitle: growth-blocking peptide (gbp) from pseudaletia separata
59c2yujA_



not modelled 7.3 24
PDB header:protein binding
Chain: A: PDB Molecule:ubiquitin fusion degradation 1-like;
PDBTitle: solution structure of human ubiquitin fusion degradation2 protein 1 homolog ufd1
60d1odza_



not modelled 7.3 30
Fold:TIM beta/alpha-barrel
Superfamily:(Trans)glycosidases
Family:beta-glycanases
61c4kr7A_



not modelled 7.3 24
PDB header:transferase/rna
Chain: A: PDB Molecule:probable trna sulfurtransferase;
PDBTitle: crystal structure of a 4-thiouridine synthetase - rna complex with2 bound atp
62c4iumA_



not modelled 7.2 12
PDB header:hydrolase/protein binding
Chain: A: PDB Molecule:papain-like protease 2;
PDBTitle: equine arteritis virus papain-like protease 2 (plp2) covalently bound2 to ubiquitin
63c5u87A_



not modelled 7.0 43
PDB header:plant protein
Chain: A: PDB Molecule:preproalbumin paws1;
PDBTitle: nmr structure of the precursor protein paws1 comprising sfti-1 and a2 seed storage albumin
64c4b2uA_



not modelled 7.0 67
PDB header:toxin
Chain: A: PDB Molecule:s67;
PDBTitle: s67, a spider venom toxin peptide from sicarius dolichocephalus
65c5xknE_



not modelled 6.9 63
PDB header:transferase/signaling protein
Chain: E: PDB Molecule:epidermal patterning factor-like protein 4;
PDBTitle: crystal structure of plant receptor erl2 in complexe with epfl4
66c5xknF_



not modelled 6.9 63
PDB header:transferase/signaling protein
Chain: F: PDB Molecule:epidermal patterning factor-like protein 4;
PDBTitle: crystal structure of plant receptor erl2 in complexe with epfl4
67c2gnnA_



not modelled 6.8 35
PDB header:hormone/growth factor
Chain: A: PDB Molecule:vascular endothelial growth factor homolog;
PDBTitle: crystal structure of the orf virus nz2 variant of vegf-e
68d1b80a_



not modelled 6.7 64
Fold:Heme-dependent peroxidases
Superfamily:Heme-dependent peroxidases
Family:CCP-like
69c6alyA_



not modelled 6.7 30
PDB header:transcription
Chain: A: PDB Molecule:mediator of rna polymerase ii transcription subunit 15;
PDBTitle: solution structure of yeast med15 abd2 residues 277-368
70c2c5sA_



not modelled 6.7 24
PDB header:rna-binding protein
Chain: A: PDB Molecule:probable thiamine biosynthesis protein thii;
PDBTitle: crystal structure of bacillus anthracis thii, a trna-2 modifying enzyme containing the predicted rna-binding3 thump domain
71c2bvtB_



not modelled 6.7 35
PDB header:hydrolase
Chain: B: PDB Molecule:beta-1,4-mannanase;
PDBTitle: the structure of a modular endo-beta-1,4-mannanase from cellulomonas2 fimi explains the product specificity of glycoside hydrolase family3 26 mannanases.
72d2ouwa1



not modelled 6.7 16
Fold:AhpD-like
Superfamily:AhpD-like
Family:TTHA0727-like
73d1a41a_



not modelled 6.7 25
Fold:DNA breaking-rejoining enzymes
Superfamily:DNA breaking-rejoining enzymes
Family:Eukaryotic DNA topoisomerase I, catalytic core
74d1xkpb1



not modelled 6.6 22
Fold:Secretion chaperone-like
Superfamily:Type III secretory system chaperone-like
Family:Type III secretory system chaperone
75c2w23A_



not modelled 6.6 55
PDB header:oxidoreductase
Chain: A: PDB Molecule:versatile peroxidase vpl2;
PDBTitle: structure of mutant w169y of pleurotus eryngii versatile2 peroxidase (vp)
76c2xv7A_



not modelled 6.5 32
PDB header:hormone
Chain: A: PDB Molecule:vascular endothelial growth factor d;
PDBTitle: crystal structure of vascular endothelial growth factor d
77d1wq9a_



not modelled 6.5 29
Fold:Cystine-knot cytokines
Superfamily:Cystine-knot cytokines
Family:Platelet-derived growth factor-like
78c2g9gA_



not modelled 6.3 75
PDB header:hydrolase
Chain: A: PDB Molecule:peptide n-glycanase;
PDBTitle: crystal structure of his-tagged mouse pngase c-terminal domain
79d1pdga_



not modelled 6.3 32
Fold:Cystine-knot cytokines
Superfamily:Cystine-knot cytokines
Family:Platelet-derived growth factor-like
80c2c7wB_



not modelled 6.2 37
PDB header:growth factor
Chain: B: PDB Molecule:vascular endothelial growth factor b precursor;
PDBTitle: crystal structure of human vascular endothelial growth2 factor-b: identification of amino acids important for3 angiogeninc activity
81d1knya2



not modelled 6.2 19
Fold:Nucleotidyltransferase
Superfamily:Nucleotidyltransferase
Family:Kanamycin nucleotidyltransferase (KNTase), N-terminal domain
82c2oz5A_



not modelled 6.2 26
PDB header:structural genomics, unknown function
Chain: A: PDB Molecule:phosphotyrosine protein phosphatase ptpb;
PDBTitle: crystal structure of mycobacterium tuberculosis protein tyrosine2 phosphatase ptpb in complex with the specific inhibitor omts
83c3kc2A_



not modelled 6.1 23
PDB header:hydrolase
Chain: A: PDB Molecule:uncharacterized protein ykr070w;
PDBTitle: crystal structure of mitochondrial had-like phosphatase from2 saccharomyces cerevisiae
84d2v4ja2



not modelled 6.1 26
Fold:Ferredoxin-like
Superfamily:Nitrite/Sulfite reductase N-terminal domain-like
Family:DsrA/DsrB N-terminal-domain-like
85d2e74d1



not modelled 6.0 25
Fold:ISP domain
Superfamily:ISP domain
Family:Rieske iron-sulfur protein (ISP)
86c5cvoA_



not modelled 6.0 36
PDB header:hydrolase/protein binding
Chain: A: PDB Molecule:wd repeat-containing protein 48;
PDBTitle: wdr48:usp46~ubiquitin ternary complex
87c2yumA_



not modelled 6.0 14
PDB header:transcription
Chain: A: PDB Molecule:zinc finger zz-type-containing protein 3;
PDBTitle: solution structure of the myb-like dna-binding domain of2 human zzz3 protein
88c6f45D_



not modelled 5.9 57
PDB header:viral protein
Chain: D: PDB Molecule:receptor recognition protein;
PDBTitle: crystal structure of the gp37-gp38 adhesin tip complex of the2 bacteriophage s16 long tail fiber
89c2ak0A_



not modelled 5.9 75
PDB header:toxin
Chain: A: PDB Molecule:alpha-conotoxin mii;
PDBTitle: structure of cyclic conotoxin mii-7
90d1qpaa_



not modelled 5.9 68
Fold:Heme-dependent peroxidases
Superfamily:Heme-dependent peroxidases
Family:CCP-like
91c4yn5A_



not modelled 5.8 24
PDB header:hydrolase
Chain: A: PDB Molecule:mannan endo-1,4-beta-mannosidase;
PDBTitle: catalytic domain of bacillus sp. jamb-750 gh26 endo-beta-1,4-mannanase
92d2fhfa1



not modelled 5.8 45
Fold:Immunoglobulin-like beta-sandwich
Superfamily:E set domains
Family:E-set domains of sugar-utilizing enzymes
93c4ynsA_



not modelled 5.7 21
PDB header:isomerase
Chain: A: PDB Molecule:lara protein;
PDBTitle: a tethered niacin-derived pincer complex with a nickel-carbon bond in2 lactate racemase
94c2gnnC_



not modelled 5.7 35
PDB header:hormone/growth factor
Chain: C: PDB Molecule:vascular endothelial growth factor homolog;
PDBTitle: crystal structure of the orf virus nz2 variant of vegf-e
95c3uiwB_



not modelled 5.6 18
PDB header:oxidoreductase
Chain: B: PDB Molecule:glutaredoxin 2;
PDBTitle: zebrafish grx2 (apo)
96d2dira1



not modelled 5.4 42
Fold:THUMP domain
Superfamily:THUMP domain-like
Family:Minimal THUMP
97d2gu3a1



not modelled 5.4 29
Fold:Cystatin-like
Superfamily:Cystatin/monellin
Family:PepSY-like
98c1qmiC_



not modelled 5.4 15
PDB header:ligase
Chain: C: PDB Molecule:rna 3'-terminal phosphate cyclase;
PDBTitle: crystal structure of rna 3'-terminal phosphate cyclase, an2 ubiquitous enzyme with unusual topology
99d1ywfa1



not modelled 5.3 25
Fold:(Phosphotyrosine protein) phosphatases II
Superfamily:(Phosphotyrosine protein) phosphatases II
Family:Mycobacterial PtpB-like

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