Phyre Home Retrieve Phyre Job Id
Emailmdejesus@rockefeller.edu
DescriptionRVBD0461_(-)_552029_552553
DateTue Jul 23 14:50:54 BST 2019
Unique Job ID8329389ff6c0c1f0
SequenceVPDFDTGAHS ... Download FASTA
Job Typenormal
Job Expiry

Summary 

Top model
Image coloured by rainbow N → C terminus
Model dimensions (Å):X:37.679 Y:21.118 Z:16.286
Model (left) based on template c2lowA_
Top template information
PDB header:membrane protein
Chain: A: PDB Molecule:apelin receptor;
PDBTitle: solution structure of ar55 in 50% hfip
Confidence and coverage
Confidence: 33.6% Coverage: 16%
28 residues ( 16% of your sequence) have been modelled with 33.6% confidence by the single highest scoring template.
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Sequence analysis 

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Secondary structure and disorder prediction [Show] 

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Detailed template information [Hide] 

 

#
Template Alignment Coverage3D Model Confidence
% i.d. Template Information
1c2lowA_
33.6 25
PDB header:membrane protein
Chain: A: PDB Molecule:apelin receptor;
PDBTitle: solution structure of ar55 in 50% hfip
2c2mbhB_
23.3 67
PDB header:transcription
Chain: B: PDB Molecule:krueppel-like factor 1;
PDBTitle: nmr structure of eklf(22-40)/ubiquitin complex
3c3orgB_
19.3 19
PDB header:transport protein
Chain: B: PDB Molecule:cmclc;
PDBTitle: crystal structure of a eukaryotic clc transporter
4c5mx2T_
15.2 25
PDB header:oxidoreductase
Chain: T: PDB Molecule:photosystem ii reaction center protein t;
PDBTitle: photosystem ii depleted of the mn4cao5 cluster at 2.55 a resolution
5c5b66T_
15.0 25
PDB header:electron transport, photosynthesis
Chain: T: PDB Molecule:photosystem ii reaction center protein t;
PDBTitle: crystal structure analysis of photosystem ii complex
6c5gtiT_
14.9 25
PDB header:photosynthesis
Chain: T: PDB Molecule:photosystem ii reaction center protein t;
PDBTitle: native xfel structure of photosystem ii (two flash dataset)
7c5v2cT_
14.9 25
PDB header:electron transport, photosynthesis
Chain: T: PDB Molecule:photosystem ii reaction center protein t;
PDBTitle: re-refinement of crystal structure of photosystem ii complex
8c5gtht_
14.9 25
PDB header:photosynthesis
Chain: T: PDB Molecule:photosystem ii reaction center protein t;
PDBTitle: native xfel structure of photosystem ii (dark dataset)
9c3wu2T_
14.9 25
PDB header:electron transport, photosynthesis
Chain: T: PDB Molecule:photosystem ii reaction center protein t;
PDBTitle: crystal structure analysis of photosystem ii complex
10c5ws5T_
14.9 25
PDB header:photosynthesis
Chain: T: PDB Molecule:photosystem ii reaction center protein t;
PDBTitle: native xfel structure of photosystem ii (preflash dark dataset)
11c5ws6T_
14.9 25
PDB header:photosynthesis
Chain: T: PDB Molecule:photosystem ii reaction center protein t;
PDBTitle: native xfel structure of photosystem ii (preflash two-flash dataset
12c5kaiT_
14.9 25
PDB header:electron transport
Chain: T: PDB Molecule:photosystem ii reaction center protein t;
PDBTitle: nh3-bound rt xfel structure of photosystem ii 500 ms after the 2nd2 illumination (2f) at 2.8 a resolution
13c5ws5t_
14.9 25
PDB header:photosynthesis
Chain: T: PDB Molecule:photosystem ii reaction center protein t;
PDBTitle: native xfel structure of photosystem ii (preflash dark dataset)
14c5zznt_
14.9 25
PDB header:electron transport
Chain: T: PDB Molecule:photosystem ii reaction center protein t;
PDBTitle: crystal structure of photosystem ii from an sqdg-deficient mutant of2 thermosynechococcus elongatus
15c5v2ct_
14.9 25
PDB header:electron transport, photosynthesis
Chain: T: PDB Molecule:photosystem ii reaction center protein t;
PDBTitle: re-refinement of crystal structure of photosystem ii complex
16c5kait_
14.9 25
PDB header:electron transport
Chain: T: PDB Molecule:photosystem ii reaction center protein t;
PDBTitle: nh3-bound rt xfel structure of photosystem ii 500 ms after the 2nd2 illumination (2f) at 2.8 a resolution
17c5zznT_
14.9 25
PDB header:electron transport
Chain: T: PDB Molecule:photosystem ii reaction center protein t;
PDBTitle: crystal structure of photosystem ii from an sqdg-deficient mutant of2 thermosynechococcus elongatus
18c5ws6t_
14.9 25
PDB header:photosynthesis
Chain: T: PDB Molecule:photosystem ii reaction center protein t;
PDBTitle: native xfel structure of photosystem ii (preflash two-flash dataset
19c5h2ft_
14.9 25
PDB header:photosynthesis
Chain: T: PDB Molecule:photosystem ii reaction center protein t;
PDBTitle: crystal structure of the psbm-deletion mutant of photosystem ii
20c5gthT_
14.9 25
PDB header:photosynthesis
Chain: T: PDB Molecule:photosystem ii reaction center protein t;
PDBTitle: native xfel structure of photosystem ii (dark dataset)
21c5b66t_
not modelled 14.9 25
PDB header:electron transport, photosynthesis
Chain: T: PDB Molecule:photosystem ii reaction center protein t;
PDBTitle: crystal structure analysis of photosystem ii complex
22c5tist_
not modelled 14.9 25
PDB header:photosynthesis
Chain: T: PDB Molecule:photosystem ii reaction center protein t;
PDBTitle: room temperature xfel structure of the native, doubly-illuminated2 photosystem ii complex
23c5kafT_
not modelled 14.9 25
PDB header:electron transport
Chain: T: PDB Molecule:photosystem ii reaction center protein t;
PDBTitle: rt xfel structure of photosystem ii in the dark state at 3.0 a2 resolution
24c3wu2t_
not modelled 14.9 25
PDB header:electron transport, photosynthesis
Chain: T: PDB Molecule:photosystem ii reaction center protein t;
PDBTitle: crystal structure analysis of photosystem ii complex
25c5gtit_
not modelled 14.9 25
PDB header:photosynthesis
Chain: T: PDB Molecule:photosystem ii reaction center protein t;
PDBTitle: native xfel structure of photosystem ii (two flash dataset)
26c4ub6t_
not modelled 14.9 25
PDB header:electron transport, photosynthesis
Chain: T: PDB Molecule:photosystem ii reaction center protein t;
PDBTitle: native structure of photosystem ii (dataset-1) by a femtosecond x-ray2 laser
27c4ub8t_
not modelled 14.9 25
PDB header:electron transport, photosynthesis
Chain: T: PDB Molecule:photosystem ii reaction center protein t;
PDBTitle: native structure of photosystem ii (dataset-2) by a femtosecond x-ray2 laser
28c4il6t_
not modelled 14.9 25
PDB header:electron transport
Chain: T: PDB Molecule:photosystem ii reaction center protein t;
PDBTitle: structure of sr-substituted photosystem ii
29c4ub8T_
not modelled 14.9 25
PDB header:electron transport, photosynthesis
Chain: T: PDB Molecule:photosystem ii reaction center protein t;
PDBTitle: native structure of photosystem ii (dataset-2) by a femtosecond x-ray2 laser
30c5b5eT_
not modelled 14.9 25
PDB header:electron transport, photosynthesis
Chain: T: PDB Molecule:photosystem ii reaction center protein t;
PDBTitle: crystal structure analysis of photosystem ii complex
31c5h2fT_
not modelled 14.9 25
PDB header:photosynthesis
Chain: T: PDB Molecule:photosystem ii reaction center protein t;
PDBTitle: crystal structure of the psbm-deletion mutant of photosystem ii
32c5kaft_
not modelled 14.9 25
PDB header:electron transport
Chain: T: PDB Molecule:photosystem ii reaction center protein t;
PDBTitle: rt xfel structure of photosystem ii in the dark state at 3.0 a2 resolution
33c5tisT_
not modelled 14.9 25
PDB header:photosynthesis
Chain: T: PDB Molecule:photosystem ii reaction center protein t;
PDBTitle: room temperature xfel structure of the native, doubly-illuminated2 photosystem ii complex
34c4ub6T_
not modelled 14.9 25
PDB header:electron transport, photosynthesis
Chain: T: PDB Molecule:photosystem ii reaction center protein t;
PDBTitle: native structure of photosystem ii (dataset-1) by a femtosecond x-ray2 laser
35c4il6T_
not modelled 14.8 25
PDB header:electron transport
Chain: T: PDB Molecule:photosystem ii reaction center protein t;
PDBTitle: structure of sr-substituted photosystem ii
36c5b5et_
not modelled 14.8 25
PDB header:electron transport, photosynthesis
Chain: T: PDB Molecule:photosystem ii reaction center protein t;
PDBTitle: crystal structure analysis of photosystem ii complex
37c5mx2t_
not modelled 14.1 25
PDB header:oxidoreductase
Chain: T: PDB Molecule:photosystem ii reaction center protein t;
PDBTitle: photosystem ii depleted of the mn4cao5 cluster at 2.55 a resolution
38c4pj0T_
not modelled 14.1 25
PDB header:oxidoreductase, electron transport
Chain: T: PDB Molecule:photosystem ii reaction center protein t;
PDBTitle: structure of t.elongatus photosystem ii, rows of dimers crystal2 packing
39c4pj0t_
not modelled 14.1 25
PDB header:oxidoreductase, electron transport
Chain: T: PDB Molecule:photosystem ii reaction center protein t;
PDBTitle: structure of t.elongatus photosystem ii, rows of dimers crystal2 packing
40c5e79T_
not modelled 14.1 25
PDB header:photosynthesis
Chain: T: PDB Molecule:photosystem ii reaction center protein t;
PDBTitle: macromolecular diffractive imaging using imperfect crystals
41c3arcT_
not modelled 14.1 25
PDB header:electron transport, photosynthesis
Chain: T: PDB Molecule:photosystem ii reaction center protein t;
PDBTitle: crystal structure of oxygen-evolving photosystem ii at 1.9 angstrom2 resolution
42c5e79t_
not modelled 14.1 25
PDB header:photosynthesis
Chain: T: PDB Molecule:photosystem ii reaction center protein t;
PDBTitle: macromolecular diffractive imaging using imperfect crystals
43c5e7cT_
not modelled 14.1 25
PDB header:photosynthesis
Chain: T: PDB Molecule:photosystem ii reaction center protein t;
PDBTitle: macromolecular diffractive imaging using imperfect crystals - bragg2 data
44c3a0ht_
not modelled 14.1 25
PDB header:electron transport
Chain: T: PDB Molecule:photosystem ii reaction center protein t;
PDBTitle: crystal structure of i-substituted photosystem ii complex
45c3a0bt_
not modelled 14.1 25
PDB header:electron transport
Chain: T: PDB Molecule:photosystem ii reaction center protein t;
PDBTitle: crystal structure of br-substituted photosystem ii complex
46c3kziT_
not modelled 14.1 25
PDB header:electron transport
Chain: T: PDB Molecule:photosystem ii reaction center protein t;
PDBTitle: crystal structure of monomeric form of cyanobacterial photosystem ii
47c4rvyt_
not modelled 14.1 25
PDB header:oxidoreductase
Chain: T: PDB Molecule:photosystem ii reaction center protein t;
PDBTitle: serial time resolved crystallography of photosystem ii using a2 femtosecond x-ray laser. the s state after two flashes (s3)
48c4rvyT_
not modelled 14.1 25
PDB header:oxidoreductase
Chain: T: PDB Molecule:photosystem ii reaction center protein t;
PDBTitle: serial time resolved crystallography of photosystem ii using a2 femtosecond x-ray laser. the s state after two flashes (s3)
49d2axtt1
not modelled 14.1 25
Fold:Single transmembrane helix
Superfamily:Photosystem II reaction center protein T, PsbT
Family:PsbT-like
50c2axtT_
not modelled 14.1 25
PDB header:electron transport
Chain: T: PDB Molecule:photosystem ii reaction center t protein;
PDBTitle: crystal structure of photosystem ii from thermosynechococcus elongatus
51c3a0hT_
not modelled 14.1 25
PDB header:electron transport
Chain: T: PDB Molecule:photosystem ii reaction center protein t;
PDBTitle: crystal structure of i-substituted photosystem ii complex
52c5e7ct_
not modelled 14.1 25
PDB header:photosynthesis
Chain: T: PDB Molecule:photosystem ii reaction center protein t;
PDBTitle: macromolecular diffractive imaging using imperfect crystals - bragg2 data
53c2axtt_
not modelled 14.1 25
PDB header:electron transport
Chain: T: PDB Molecule:photosystem ii reaction center t protein;
PDBTitle: crystal structure of photosystem ii from thermosynechococcus elongatus
54c1s5lt_
not modelled 14.1 25
PDB header:photosynthesis
Chain: T: PDB Molecule:photosystem ii psbt protein;
PDBTitle: architecture of the photosynthetic oxygen evolving center
55c1s5lT_
not modelled 14.1 25
PDB header:photosynthesis
Chain: T: PDB Molecule:photosystem ii psbt protein;
PDBTitle: architecture of the photosynthetic oxygen evolving center
56c3prqT_
not modelled 14.1 25
PDB header:photosynthesis
Chain: T: PDB Molecule:photosystem ii reaction center protein t;
PDBTitle: crystal structure of cyanobacterial photosystem ii in complex with2 terbutryn (part 1 of 2). this file contains first monomer of psii3 dimer
57c4tnkt_
not modelled 14.1 25
PDB header:electron transport,photosynthesis
Chain: T: PDB Molecule:photosystem ii reaction center protein t;
PDBTitle: rt xfel structure of photosystem ii 250 microsec after the third2 illumination at 5.2 a resolution
58c4tniT_
not modelled 14.1 25
PDB header:electron transport,photosynthesis
Chain: T: PDB Molecule:photosystem ii reaction center protein t;
PDBTitle: rt xfel structure of photosystem ii 500 ms after the third2 illumination at 4.6 a resolution
59c4ixrt_
not modelled 14.1 25
PDB header:photosynthesis
Chain: T: PDB Molecule:photosystem ii reaction center protein t;
PDBTitle: rt fs x-ray diffraction of photosystem ii, first illuminated state
60c3bz1T_
not modelled 14.1 25
PDB header:electron transport
Chain: T: PDB Molecule:photosystem ii reaction center protein t;
PDBTitle: crystal structure of cyanobacterial photosystem ii (part 1 of 2). this2 file contains first monomer of psii dimer
61c4tnit_
not modelled 14.1 25
PDB header:electron transport,photosynthesis
Chain: T: PDB Molecule:photosystem ii reaction center protein t;
PDBTitle: rt xfel structure of photosystem ii 500 ms after the third2 illumination at 4.6 a resolution
62c4tnjt_
not modelled 14.1 25
PDB header:electron transport,photosynthesis
Chain: T: PDB Molecule:photosystem ii reaction center protein t;
PDBTitle: rt xfel structure of photosystem ii 500 ms after the 2nd illumination2 (2f) at 4.5 a resolution
63c4ixqt_
not modelled 14.1 25
PDB header:photosynthesis
Chain: T: PDB Molecule:photosystem ii reaction center protein t;
PDBTitle: rt fs x-ray diffraction of photosystem ii, dark state
64c4tnht_
not modelled 14.1 25
PDB header:electron transport,photosynthesis
Chain: T: PDB Molecule:photosystem ii reaction center protein t;
PDBTitle: rt xfel structure of photosystem ii in the dark state at 4.9 a2 resolution
65c3prrT_
not modelled 14.1 25
PDB header:photosynthesis
Chain: T: PDB Molecule:photosystem ii reaction center protein t;
PDBTitle: crystal structure of cyanobacterial photosystem ii in complex with2 terbutryn (part 2 of 2). this file contains second monomer of psii3 dimer
66c4tnkT_
not modelled 14.1 25
PDB header:electron transport,photosynthesis
Chain: T: PDB Molecule:photosystem ii reaction center protein t;
PDBTitle: rt xfel structure of photosystem ii 250 microsec after the third2 illumination at 5.2 a resolution
67c4fbyg_
not modelled 14.1 25
PDB header:photosynthesis
Chain: G: PDB Molecule:photosystem q(b) protein 1;
PDBTitle: fs x-ray diffraction of photosystem ii
68c4ixrT_
not modelled 14.1 25
PDB header:photosynthesis
Chain: T: PDB Molecule:photosystem ii reaction center protein t;
PDBTitle: rt fs x-ray diffraction of photosystem ii, first illuminated state
69c4fbyT_
not modelled 14.1 25
PDB header:photosynthesis
Chain: T: PDB Molecule:photosystem ii reaction center protein t;
PDBTitle: fs x-ray diffraction of photosystem ii
70c4tnjT_
not modelled 14.1 25
PDB header:electron transport,photosynthesis
Chain: T: PDB Molecule:photosystem ii reaction center protein t;
PDBTitle: rt xfel structure of photosystem ii 500 ms after the 2nd illumination2 (2f) at 4.5 a resolution
71c4tnhT_
not modelled 14.1 25
PDB header:electron transport,photosynthesis
Chain: T: PDB Molecule:photosystem ii reaction center protein t;
PDBTitle: rt xfel structure of photosystem ii in the dark state at 4.9 a2 resolution
72c3bz2T_
not modelled 14.1 25
PDB header:electron transport
Chain: T: PDB Molecule:photosystem ii reaction center protein t;
PDBTitle: crystal structure of cyanobacterial photosystem ii (part 2 of 2). this2 file contains second monomer of psii dimer
73c4ixqT_
not modelled 14.1 25
PDB header:photosynthesis
Chain: T: PDB Molecule:photosystem ii reaction center protein t;
PDBTitle: rt fs x-ray diffraction of photosystem ii, dark state
74c5lxlA_
not modelled 13.9 37
PDB header:viral protein
Chain: A: PDB Molecule:decoration protein;
PDBTitle: nmr structure of the n-terminal domain of the bacteriophage t52 decoration protein pb10
75c3uoeB_
not modelled 12.7 17
PDB header:oxidoreductase
Chain: B: PDB Molecule:dehydrogenase;
PDBTitle: the crystal structure of dehydrogenase from sinorhizobium meliloti
76c2vpzG_
not modelled 11.4 23
PDB header:oxidoreductase
Chain: G: PDB Molecule:hypothetical membrane spanning protein;
PDBTitle: polysulfide reductase native structure
77c3p3dA_
not modelled 11.2 75
PDB header:nuclear protein
Chain: A: PDB Molecule:nucleoporin 53;
PDBTitle: crystal structure of the nup53 rrm domain from pichia guilliermondii
78d3bexa2
not modelled 11.0 0
Fold:Ribonuclease H-like motif
Superfamily:Actin-like ATPase domain
Family:CoaX-like
79c3a0bT_
not modelled 10.7 25
PDB header:electron transport
Chain: T: PDB Molecule:photosystem ii reaction center protein t;
PDBTitle: crystal structure of br-substituted photosystem ii complex
80c3arct_
not modelled 10.7 25
PDB header:electron transport, photosynthesis
Chain: T: PDB Molecule:photosystem ii reaction center protein t;
PDBTitle: crystal structure of oxygen-evolving photosystem ii at 1.9 angstrom2 resolution
81c1vbiA_
not modelled 10.5 24
PDB header:oxidoreductase
Chain: A: PDB Molecule:type 2 malate/lactate dehydrogenase;
PDBTitle: crystal structure of type 2 malate/lactate dehydrogenase from thermus2 thermophilus hb8
82c1v9nA_
not modelled 10.1 14
PDB header:oxidoreductase
Chain: A: PDB Molecule:malate dehydrogenase;
PDBTitle: structure of malate dehydrogenase from pyrococcus horikoshii ot3
83c5w7lA_
not modelled 9.5 14
PDB header:membrane protein
Chain: A: PDB Molecule:n,n'-diacetylbacilliosaminyl-1-phosphate transferase;
PDBTitle: structure of campylobacter concisus pglc i57m/q175m variant
84c2m4mA_
not modelled 9.1 38
PDB header:unknown function
Chain: A: PDB Molecule:hypothetical protein;
PDBTitle: solution structure of the rrm domain of the hypothetical protein2 cagl0m09691g from candida glabrata
85c3i0pA_
not modelled 9.0 10
PDB header:oxidoreductase
Chain: A: PDB Molecule:malate dehydrogenase;
PDBTitle: crystal structure of malate dehydrogenase from entamoeba histolytica
86c3zs7A_
not modelled 8.4 16
PDB header:transferase
Chain: A: PDB Molecule:pyridoxal kinase;
PDBTitle: crystal structure of pyridoxal kinase from trypanosoma brucei
87c2vdaB_
not modelled 7.4 54
PDB header:protein transport
Chain: B: PDB Molecule:maltoporin;
PDBTitle: solution structure of the seca-signal peptide complex
88d1dd3a1
not modelled 7.0 19
Fold:Ribosomal protein L7/12, oligomerisation (N-terminal) domain
Superfamily:Ribosomal protein L7/12, oligomerisation (N-terminal) domain
Family:Ribosomal protein L7/12, oligomerisation (N-terminal) domain
89c1spfA_
not modelled 6.6 42
PDB header:lipoprotein(surface film)
Chain: A: PDB Molecule:pulmonary surfactant-associated polypeptide c;
PDBTitle: the nmr structure of the pulmonary surfactant-associated2 polypeptide sp-c in an apolar solvent contains a valyl-3 rich alpha-helix
90c5uazB_
not modelled 6.5 38
PDB header:protein transport
Chain: B: PDB Molecule:nucleoporin nup53;
PDBTitle: crystal structure of the yeast nucleoporin
91c1iflA_
not modelled 6.2 48
PDB header:virus
Chain: A: PDB Molecule:inovirus;
PDBTitle: molecular models and structural comparisons of native and2 mutant class i filamentous bacteriophages ff (fd, f1, m13),3 if1 and ike
92c2w0cT_
not modelled 6.0 43
PDB header:virus
Chain: T: PDB Molecule:protein p6;
PDBTitle: x-ray structure of the entire lipid-containing bacteriophage pm2
93c5no7B_
not modelled 5.2 60
PDB header:oxidoreductase
Chain: B: PDB Molecule:lytic polysaccharide monooxygenase;
PDBTitle: crystal structure of a xylan-active lytic polysaccharide monooxygenase2 from pycnoporus coccineus.

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