Phyre Home Retrieve Phyre Job Id
Emailmdejesus@rockefeller.edu
DescriptionRVBD0464c_(-)_554316_554888
DateTue Jul 23 14:50:54 BST 2019
Unique Job ID0c2d8a39cb871a4a
SequenceMTGQNGQVAR ... Download FASTA
Job Typenormal
Job Expiry

Summary 

Top model
Image coloured by rainbow N → C terminus
Model dimensions (Å):X:49.083 Y:41.920 Z:49.585
Model (left) based on template c3lvyB_
Top template information
PDB header:lyase
Chain: B: PDB Molecule:carboxymuconolactone decarboxylase family;
PDBTitle: crystal structure of carboxymuconolactone decarboxylase2 family protein smu.961 from streptococcus mutans
Confidence and coverage
Confidence:100.0% Coverage: 92%
175 residues ( 92% of your sequence) have been modelled with 100.0% confidence by the single highest scoring template.
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Sequence analysis 

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Domain analysis [Show] 

Detailed template information [Hide] 

 

#
Template Alignment Coverage3D Model Confidence
% i.d. Template Information
1c3lvyB_



100.0 10
PDB header:lyase
Chain: B: PDB Molecule:carboxymuconolactone decarboxylase family;
PDBTitle: crystal structure of carboxymuconolactone decarboxylase2 family protein smu.961 from streptococcus mutans
2d2oyoa1



100.0 20
Fold:AhpD-like
Superfamily:AhpD-like
Family:Atu0492-like
3d2prra1



100.0 17
Fold:AhpD-like
Superfamily:AhpD-like
Family:Atu0492-like
4c6ohiA_



100.0 14
PDB header:biosynthetic protein
Chain: A: PDB Molecule:debrominase bmp8;
PDBTitle: crystal structure of the debrominase bmp8 (apo)
5d2pfxa1



100.0 16
Fold:AhpD-like
Superfamily:AhpD-like
Family:Atu0492-like
6c3c1lB_



100.0 17
PDB header:oxidoreductase
Chain: B: PDB Molecule:putative antioxidant defense protein mlr4105;
PDBTitle: crystal structure of an antioxidant defense protein (mlr4105) from2 mesorhizobium loti maff303099 at 2.00 a resolution
7d2o4da1



100.0 21
Fold:AhpD-like
Superfamily:AhpD-like
Family:Atu0492-like
8d2gmya1



100.0 16
Fold:AhpD-like
Superfamily:AhpD-like
Family:Atu0492-like
9d2ouwa1



99.9 26
Fold:AhpD-like
Superfamily:AhpD-like
Family:TTHA0727-like
10c5dj4D_



99.8 20
PDB header:signaling protein
Chain: D: PDB Molecule:sestrin-2;
PDBTitle: leucine-bound sestrin2 from homo sapiens
11c2qeuA_



99.5 14
PDB header:lyase
Chain: A: PDB Molecule:putative carboxymuconolactone decarboxylase;
PDBTitle: crystal structure of putative carboxymuconolactone decarboxylase2 (yp_555818.1) from burkholderia xenovorans lb400 at 1.65 a resolution
12c1p8cD_



99.4 15
PDB header:structural genomics, unknown function
Chain: D: PDB Molecule:conserved hypothetical protein;
PDBTitle: crystal structure of tm1620 (apc4843) from thermotoga2 maritima
13c3beyC_



99.4 15
PDB header:structural genomics, unknown function
Chain: C: PDB Molecule:conserved protein o27018;
PDBTitle: crystal structure of the protein o27018 from methanobacterium2 thermoautotrophicum. northeast structural genomics consortium target3 tt217
14c5dipB_



99.4 14
PDB header:oxidoreductase
Chain: B: PDB Molecule:alkyl hydroperoxide reductase ahpd;
PDBTitle: crystal structure of lpg0406 in reduced form from legionella2 pneumophila
15d1vkea_



99.3 14
Fold:AhpD-like
Superfamily:AhpD-like
Family:CMD-like
16d2cwqa1



99.3 17
Fold:AhpD-like
Superfamily:AhpD-like
Family:TTHA0727-like
17c3d7iB_



99.2 11
PDB header:lyase
Chain: B: PDB Molecule:carboxymuconolactone decarboxylase family protein;
PDBTitle: crystal structure of carboxymuconolactone decarboxylase family protein2 possibly involved in oxygen detoxification (1591455) from3 methanococcus jannaschii at 1.75 a resolution
18d2q0ta1



99.1 10
Fold:AhpD-like
Superfamily:AhpD-like
Family:AhpD
19d1vkeb_



99.1 16
Fold:AhpD-like
Superfamily:AhpD-like
Family:CMD-like
20d1knca_



99.1 20
Fold:AhpD-like
Superfamily:AhpD-like
Family:AhpD
21c5gzxD_



not modelled 98.8 9
PDB header:hydrolase
Chain: D: PDB Molecule:(r)-2-haloacid dehalogenase;
PDBTitle: the complex structure of d-2-haloacid dehalogenase mutant with d-2-cpa
22c4g9qA_



not modelled 98.5 19
PDB header:lyase
Chain: A: PDB Molecule:4-carboxymuconolactone decarboxylase;
PDBTitle: crystal structure of a 4-carboxymuconolactone decarboxylase
23d2af7a1



not modelled 98.0 21
Fold:AhpD-like
Superfamily:AhpD-like
Family:CMD-like
24c3bjxB_



not modelled 90.8 13
PDB header:hydrolase
Chain: B: PDB Molecule:halocarboxylic acid dehalogenase dehi;
PDBTitle: structure of a group i haloacid dehalogenase from2 pseudomonas putida strain pp3
25c4n2xF_



not modelled 89.8 8
PDB header:hydrolase
Chain: F: PDB Molecule:dl-2-haloacid dehalogenase;
PDBTitle: crystal structure of dl-2-haloacid dehalogenase
26d1a9xa1



not modelled 76.0 13
Fold:Carbamoyl phosphate synthetase, large subunit connection domain
Superfamily:Carbamoyl phosphate synthetase, large subunit connection domain
Family:Carbamoyl phosphate synthetase, large subunit connection domain
27c6et8B_



not modelled 75.8 18
PDB header:protein binding
Chain: B: PDB Molecule:albicidin resistance protein;
PDBTitle: crystal structure of alba in complex with albicidin
28c2ev2B_



not modelled 39.0 8
PDB header:lyase
Chain: B: PDB Molecule:hypothetical protein rv1264/mt1302;
PDBTitle: structure of rv1264n, the regulatory domain of the mycobacterial2 adenylyl cylcase rv1264, at ph 8.5
29d2p7vb1



not modelled 38.0 10
Fold:DNA/RNA-binding 3-helical bundle
Superfamily:Sigma3 and sigma4 domains of RNA polymerase sigma factors
Family:Sigma4 domain
30d1khda1



not modelled 19.7 9
Fold:Methionine synthase domain-like
Superfamily:Nucleoside phosphorylase/phosphoribosyltransferase N-terminal domain
Family:Nucleoside phosphorylase/phosphoribosyltransferase N-terminal domain
31c5tmxA_



not modelled 15.8 11
PDB header:transcription regulator
Chain: A: PDB Molecule:protein sini;
PDBTitle: solution structure of sini, antagonist to the master biofilm-regulator2 sinr in bacillus subtilis
32c2k9lA_



not modelled 14.3 11
PDB header:transcription
Chain: A: PDB Molecule:rna polymerase sigma factor rpon;
PDBTitle: structure of the core binding domain of sigma54
33c5dotA_



not modelled 13.8 11
PDB header:ligase
Chain: A: PDB Molecule:carbamoyl-phosphate synthase [ammonia], mitochondrial;
PDBTitle: crystal structure of human carbamoyl phosphate synthetase i (cps1),2 apo form
34c6b4hB_



not modelled 13.8 18
PDB header:transport protein
Chain: B: PDB Molecule:nucleoporin amo1;
PDBTitle: crystal structure of chaetomium thermophilum gle1 ctd-nup42 gbm-ip62 complex
35c3gmfA_



not modelled 13.5 7
PDB header:oxidoreductase
Chain: A: PDB Molecule:protein-disulfide isomerase;
PDBTitle: crystal structure of protein-disulfide isomerase from novosphingobium2 aromaticivorans
36c3dvwA_



not modelled 13.2 8
PDB header:oxidoreductase
Chain: A: PDB Molecule:thiol:disulfide interchange protein dsba;
PDBTitle: crystal structure of reduced dsba1 from neisseria2 meningitidis
37d1ku3a_



not modelled 12.9 10
Fold:DNA/RNA-binding 3-helical bundle
Superfamily:Sigma3 and sigma4 domains of RNA polymerase sigma factors
Family:Sigma4 domain
38d1jhfa1



not modelled 12.5 29
Fold:DNA/RNA-binding 3-helical bundle
Superfamily:"Winged helix" DNA-binding domain
Family:LexA repressor, N-terminal DNA-binding domain
39d1v8ga1



not modelled 11.9 11
Fold:Methionine synthase domain-like
Superfamily:Nucleoside phosphorylase/phosphoribosyltransferase N-terminal domain
Family:Nucleoside phosphorylase/phosphoribosyltransferase N-terminal domain
40c5gncA_



not modelled 11.8 9
PDB header:unknown function
Chain: A: PDB Molecule:avh146;
PDBTitle: crystal structure of phytophthora. sojae psr2
41d1beda_



not modelled 11.7 8
Fold:Thioredoxin fold
Superfamily:Thioredoxin-like
Family:DsbA-like
42c2k9mA_



not modelled 11.5 11
PDB header:transcription
Chain: A: PDB Molecule:rna polymerase sigma factor rpon;
PDBTitle: structure of the core binding domain of sigma54
43d1ngra_



not modelled 11.2 14
Fold:DEATH domain
Superfamily:DEATH domain
Family:DEATH domain, DD
44c3t72o_



not modelled 10.7 8
PDB header:transcription/dna
Chain: O: PDB Molecule:pho box dna (strand 1);
PDBTitle: phob(e)-sigma70(4)-(rnap-betha-flap-tip-helix)-dna transcription2 activation sub-complex
45c3f4tA_



not modelled 10.6 20
PDB header:oxidoreductase
Chain: A: PDB Molecule:putative uncharacterized protein;
PDBTitle: crystal structure of wolbachia pipientis alpha-dsba1 c97a/c146a
46c3c7mB_



not modelled 10.5 7
PDB header:oxidoreductase
Chain: B: PDB Molecule:thiol:disulfide interchange protein dsba-like;
PDBTitle: crystal structure of reduced dsbl
47c3fybA_



not modelled 10.5 18
PDB header:structural genomics, unknown function
Chain: A: PDB Molecule:protein of unknown function (duf1244);
PDBTitle: crystal structure of a protein of unknown function (duf1244) from2 alcanivorax borkumensis
48c6mtgB_



not modelled 10.4 9
PDB header:transferase
Chain: B: PDB Molecule:homoserine o-succinyltransferase;
PDBTitle: a single reactive noncanonical amino acid is able to dramatically2 stabilize protein structure
49c4igcX_



not modelled 10.4 8
PDB header:transcription, transferase
Chain: X: PDB Molecule:rna polymerase sigma factor rpod;
PDBTitle: x-ray crystal structure of escherichia coli sigma70 holoenzyme
50c1t3bA_



not modelled 10.4 33
PDB header:isomerase
Chain: A: PDB Molecule:thiol:disulfide interchange protein dsbc;
PDBTitle: x-ray structure of dsbc from haemophilus influenzae
51c3l9vE_



not modelled 9.8 11
PDB header:oxidoreductase
Chain: E: PDB Molecule:putative thiol-disulfide isomerase or thioredoxin;
PDBTitle: crystal structure of salmonella enterica serovar typhimurium srga
52c5douC_



not modelled 9.7 11
PDB header:ligase
Chain: C: PDB Molecule:carbamoyl-phosphate synthase [ammonia], mitochondrial;
PDBTitle: crystal structure of human carbamoyl phosphate synthetase i (cps1),2 ligand-bound form
53c4nxiB_



not modelled 9.6 18
PDB header:oxidoreductase
Chain: B: PDB Molecule:uncharacterized protein;
PDBTitle: rv2466c mediates the activation of tp053 to kill replicating and non-2 replicating mycobacterium tuberculosis
54c3bciA_



not modelled 9.4 13
PDB header:oxidoreductase
Chain: A: PDB Molecule:disulfide bond protein a;
PDBTitle: crystal structure of staphylococcus aureus dsba
55d1t3ba1



not modelled 9.4 33
Fold:Thioredoxin fold
Superfamily:Thioredoxin-like
Family:DsbC/DsbG C-terminal domain-like
56c4npbA_



not modelled 8.9 33
PDB header:isomerase
Chain: A: PDB Molecule:protein disulfide isomerase ii;
PDBTitle: the crystal structure of thiol:disulfide interchange protein dsbc from2 yersinia pestis co92
57c4p3yB_



not modelled 8.7 14
PDB header:translation/oxidoreductase
Chain: B: PDB Molecule:thiol:disulfide interchange protein;
PDBTitle: crystal structure of acinetobacter baumannii dsba in complex with ef-2 tu
58d1ttya_



not modelled 8.5 10
Fold:DNA/RNA-binding 3-helical bundle
Superfamily:Sigma3 and sigma4 domains of RNA polymerase sigma factors
Family:Sigma4 domain
59c2yx0A_



not modelled 8.3 10
PDB header:metal binding protein
Chain: A: PDB Molecule:radical sam enzyme;
PDBTitle: crystal structure of p. horikoshii tyw1
60c4k2dA_



not modelled 8.1 8
PDB header:oxidoreductase
Chain: A: PDB Molecule:thiol:disulfide interchange protein;
PDBTitle: crystal structure of burkholderia pseudomallei dsba
61c3thgA_



not modelled 7.9 9
PDB header:protein binding
Chain: A: PDB Molecule:ribulose bisphosphate carboxylase/oxygenase activase 1,
PDBTitle: crystal structure of the creosote rubisco activase c-domain
62c3gl5A_



not modelled 7.7 18
PDB header:structural genomics, unknown function
Chain: A: PDB Molecule:putative dsba oxidoreductase sco1869;
PDBTitle: crystal structure of probable dsba oxidoreductase sco1869 from2 streptomyces coelicolor
63c5hfiA_



not modelled 7.7 15
PDB header:oxidoreductase
Chain: A: PDB Molecule:uncharacterized protein, cytosolic disulfide reductase
PDBTitle: cytosolic disulfide reductase dsbm from pseudomonas aeruginosa with2 gsh
64c4n30A_



not modelled 7.6 17
PDB header:oxidoreductase
Chain: A: PDB Molecule:protein disulfide isomerase;
PDBTitle: crystal structure of pseudomonas aeruginosa dsba2
65c2eq9C_



not modelled 7.6 33
PDB header:oxidoreductase
Chain: C: PDB Molecule:pyruvate dehydrogenase complex, dihydrolipoamide
PDBTitle: crystal structure of lipoamide dehydrogenase from thermus thermophilus2 hb8 with psbdb
66c1m6vE_



not modelled 7.5 13
PDB header:ligase
Chain: E: PDB Molecule:carbamoyl phosphate synthetase large chain;
PDBTitle: crystal structure of the g359f (small subunit) point mutant of2 carbamoyl phosphate synthetase
67c6cy8B_



not modelled 7.5 16
PDB header:biosynthetic protein
Chain: B: PDB Molecule:butyryl-coa dehydrogenase;
PDBTitle: crystal structure of fad-dependent dehydrogenase
68c1v57A_



not modelled 7.4 25
PDB header:isomerase
Chain: A: PDB Molecule:thiol:disulfide interchange protein dsbg;
PDBTitle: crystal structure of the disulfide bond isomerase dsbg
69c3h93A_



not modelled 7.4 8
PDB header:transcription regulator
Chain: A: PDB Molecule:thiol:disulfide interchange protein dsba;
PDBTitle: crystal structure of pseudomonas aeruginosa dsba
70c4jhkC_



not modelled 7.4 43
PDB header:translation
Chain: C: PDB Molecule:sb:cb157 protein;
PDBTitle: crystal structure of danio rerio slip1 in complex with slbp
71c1a6bB_



not modelled 7.3 33
PDB header:viral protein/dna
Chain: B: PDB Molecule:zinc finger protein ncp10;
PDBTitle: nmr structure of the complex between the zinc finger2 protein ncp10 of moloney murine leukemia virus and a3 sequence of the psi-packaging domain of hiv-1, 204 structures
72c4jrrC_



not modelled 7.2 8
PDB header:oxidoreductase
Chain: C: PDB Molecule:thiol:disulfide interchange protein dsba;
PDBTitle: crystal structure of disulfide bond oxidoreductase dsba1 from2 legionella pneumophila
73d1abaa_



not modelled 7.0 13
Fold:Thioredoxin fold
Superfamily:Thioredoxin-like
Family:Thioltransferase
74d2cyua1



not modelled 6.9 44
Fold:Peripheral subunit-binding domain of 2-oxo acid dehydrogenase complex
Superfamily:Peripheral subunit-binding domain of 2-oxo acid dehydrogenase complex
Family:Peripheral subunit-binding domain of 2-oxo acid dehydrogenase complex
75c6hl2C_



not modelled 6.8 17
PDB header:electron transport
Chain: C: PDB Molecule:nadh-quinone oxidoreductase subunit e;
PDBTitle: wild-type nuoef from aquifex aeolicus - oxidized form
76c1jzdA_



not modelled 6.8 33
PDB header:oxidoreductase
Chain: A: PDB Molecule:thiol:disulfide interchange protein dsbc;
PDBTitle: dsbc-dsbdalpha complex
77d1brwa1



not modelled 6.8 12
Fold:Methionine synthase domain-like
Superfamily:Nucleoside phosphorylase/phosphoribosyltransferase N-terminal domain
Family:Nucleoside phosphorylase/phosphoribosyltransferase N-terminal domain
78c1yk0E_



not modelled 6.5 50
PDB header:hormone/growth factor receptor
Chain: E: PDB Molecule:atrial natriuretic factor;
PDBTitle: structure of natriuretic peptide receptor-c complexed with atrial2 natriuretic peptide
79c4ml1D_



not modelled 6.5 17
PDB header:isomerase
Chain: D: PDB Molecule:dsbp;
PDBTitle: disulfide isomerase (dsbp) from multidrug resistance inca/c2 transferable plasmid in oxidized state (p212121 space group)
80d1eeja1



not modelled 6.5 33
Fold:Thioredoxin fold
Superfamily:Thioredoxin-like
Family:DsbC/DsbG C-terminal domain-like
81d2o35a1



not modelled 6.4 20
Fold:SMc04008-like
Superfamily:SMc04008-like
Family:SMc04008-like
82c2o35A_



not modelled 6.4 20
PDB header:structural genomics, unknown function
Chain: A: PDB Molecule:hypothetical protein duf1244;
PDBTitle: protein of unknown function (duf1244) from sinorhizobium meliloti
83c2eq8C_



not modelled 6.3 33
PDB header:oxidoreductase
Chain: C: PDB Molecule:pyruvate dehydrogenase complex, dihydrolipoamide
PDBTitle: crystal structure of lipoamide dehydrogenase from thermus thermophilus2 hb8 with psbdp
84c4xvwK_



not modelled 6.3 17
PDB header:isomerase
Chain: K: PDB Molecule:dsba-like protein;
PDBTitle: crystal structure of proteus mirabilis scsc in a compact conformation
85c3gv1A_



not modelled 6.2 8
PDB header:structural genomics, unknown function
Chain: A: PDB Molecule:disulfide interchange protein;
PDBTitle: crystal structure of disulfide interchange protein from neisseria2 gonorrhoeae
86c3hd5A_



not modelled 6.1 8
PDB header:oxidoreductase
Chain: A: PDB Molecule:thiol:disulfide interchange protein dsba;
PDBTitle: crystal structure of a thiol:disulfide interchange protein2 dsba from bordetella parapertussis
87c3ghaA_



not modelled 6.1 7
PDB header:oxidoreductase
Chain: A: PDB Molecule:disulfide bond formation protein d;
PDBTitle: crystal structure of etda-treated bdbd (reduced)
88c2in3A_



not modelled 6.1 9
PDB header:isomerase
Chain: A: PDB Molecule:hypothetical protein;
PDBTitle: crystal structure of a putative protein disulfide isomerase from2 nitrosomonas europaea
89d1u6pa_



not modelled 5.9 33
Fold:Retrovirus zinc finger-like domains
Superfamily:Retrovirus zinc finger-like domains
Family:Retrovirus zinc finger-like domains
90c4x2eA_



not modelled 5.8 43
PDB header:transferase
Chain: A: PDB Molecule:fic family protein putative filamentation induced by camp
PDBTitle: clostridium difficile wild type fic protein
91c2remB_



not modelled 5.8 8
PDB header:oxidoreductase
Chain: B: PDB Molecule:disulfide oxidoreductase;
PDBTitle: crystal structure of oxidoreductase dsba from xylella fastidiosa
92d1o17a1



not modelled 5.8 11
Fold:Methionine synthase domain-like
Superfamily:Nucleoside phosphorylase/phosphoribosyltransferase N-terminal domain
Family:Nucleoside phosphorylase/phosphoribosyltransferase N-terminal domain
93c2imeA_



not modelled 5.7 9
PDB header:transferase
Chain: A: PDB Molecule:2-hydroxychromene-2-carboxylate isomerase;
PDBTitle: 2-hydroxychromene-2-carboxylate isomerase: a kappa class glutathione-2 s-transferase from pseudomonas putida
94d1uoua1



not modelled 5.7 18
Fold:Methionine synthase domain-like
Superfamily:Nucleoside phosphorylase/phosphoribosyltransferase N-terminal domain
Family:Nucleoside phosphorylase/phosphoribosyltransferase N-terminal domain
95c3feuA_



not modelled 5.6 22
PDB header:oxidoreductase
Chain: A: PDB Molecule:putative lipoprotein;
PDBTitle: crystal structure of dsba-like thioredoxin domain vf_a0457 from vibrio2 fischeri
96c5hs9A_



not modelled 5.5 10
PDB header:dna binding protein
Chain: A: PDB Molecule:hth-type transcriptional regulator yodb;
PDBTitle: crystal structure of the quinone-bound yodb from b. subtilis
97d1fvka_



not modelled 5.5 22
Fold:Thioredoxin fold
Superfamily:Thioredoxin-like
Family:DsbA-like
98d2elca1



not modelled 5.5 10
Fold:Methionine synthase domain-like
Superfamily:Nucleoside phosphorylase/phosphoribosyltransferase N-terminal domain
Family:Nucleoside phosphorylase/phosphoribosyltransferase N-terminal domain
99c6eezC_



not modelled 5.3 14
PDB header:isomerase
Chain: C: PDB Molecule:dsba-like disulfide oxidoreductase;
PDBTitle: crystal structure of the thiol-disulfide exchange protein alpha-dsba22 from wolbachia pipientis

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Transmembrane helix prediction 

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