Phyre Home Retrieve Phyre Job Id
Emailmdejesus@rockefeller.edu
DescriptionRVBD0470A_(-)_561857_562297
DateTue Jul 23 14:50:55 BST 2019
Unique Job ID732a757ed7901428
SequenceVGAGGWEVVL ... Download FASTA
Job Typenormal
Job Expiry

Summary 

Top model
Image coloured by rainbow N → C terminus
Model dimensions (Å):X:36.587 Y:45.773 Z:45.640
Model (left) based on template c4od5C_
Top template information
PDB header:transferase
Chain: C: PDB Molecule:4-hydroxybenzoate octaprenyltransferase;
PDBTitle: substrate-bound structure of a ubia homolog from aeropyrum pernix k1
Confidence and coverage
Confidence: 99.2% Coverage: 52%
76 residues ( 52% of your sequence) have been modelled with 99.2% confidence by the single highest scoring template.
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Sequence analysis 

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Secondary structure and disorder prediction [Show] 

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#
Template Alignment Coverage3D Model Confidence
% i.d. Template Information
1c4od5C_



99.2 21
PDB header:transferase
Chain: C: PDB Molecule:4-hydroxybenzoate octaprenyltransferase;
PDBTitle: substrate-bound structure of a ubia homolog from aeropyrum pernix k1
2c3wmmP_



72.7 19
PDB header:photosynthesis
Chain: P: PDB Molecule:lh1 beta polypeptide;
PDBTitle: crystal structure of the lh1-rc complex from thermochromatium tepidum2 in c2 form
3c3ts7B_



71.2 19
PDB header:transferase
Chain: B: PDB Molecule:geranyltranstransferase;
PDBTitle: crystal structure of farnesyl diphosphate synthase (target efi-501951)2 from methylococcus capsulatus
4c3m9uD_



69.5 12
PDB header:transferase
Chain: D: PDB Molecule:farnesyl-diphosphate synthase;
PDBTitle: crystal structure of geranylgeranyl pyrophosphate synthase from2 lactobacillus brevis atcc 367
5c2ndjA_



64.7 7
PDB header:membrane protein
Chain: A: PDB Molecule:potassium voltage-gated channel subfamily e member 3;
PDBTitle: structural basis for kcne3 and estrogen modulation of the kcnq12 channel
6c1wrgA_



53.7 17
PDB header:membrane protein
Chain: A: PDB Molecule:light-harvesting protein b-880, beta chain;
PDBTitle: light-harvesting complex 1 beta subunit from wild-type2 rhodospirillum rubrum
7d1lghb_



49.2 25
Fold:Light-harvesting complex subunits
Superfamily:Light-harvesting complex subunits
Family:Light-harvesting complex subunits
8c2zcpA_



45.5 12
PDB header:transferase
Chain: A: PDB Molecule:dehydrosqualene synthase;
PDBTitle: crystal structure of the c(30) carotenoid dehydrosqualene synthase2 from staphylococcus aureus complexed with farnesyl thiopyrophosphate
9d1jpya_



41.5 88
Fold:Cystine-knot cytokines
Superfamily:Cystine-knot cytokines
Family:Interleukin 17F, IL-17F
10c3lomA_



40.1 13
PDB header:transferase
Chain: A: PDB Molecule:geranyltranstransferase;
PDBTitle: crystal structure of geranyltransferase from legionella pneumophila
11c2vxsB_



39.3 75
PDB header:cytokine
Chain: B: PDB Molecule:interleukin-17a;
PDBTitle: structure of il-17a in complex with a potent, fully human2 neutralising antibody
12c2k21A_



38.5 22
PDB header:membrane protein
Chain: A: PDB Molecule:potassium voltage-gated channel subfamily e
PDBTitle: nmr structure of human kcne1 in lmpg micelles at ph 6.0 and2 40 degree c
13c3m0gB_



36.5 16
PDB header:transferase
Chain: B: PDB Molecule:farnesyl diphosphate synthase;
PDBTitle: crystal structure of putative farnesyl diphosphate synthase from2 rhodobacter capsulatus
14c2m0qA_



36.2 22
PDB header:membrane protein
Chain: A: PDB Molecule:potassium voltage-gated channel subfamily e member 2;
PDBTitle: solution nmr analysis of intact kcne2 in detergent micelles2 demonstrate a straight transmembrane helix
15c2ftzA_



33.2 14
PDB header:transferase
Chain: A: PDB Molecule:geranyltranstransferase;
PDBTitle: crystal structure of geranyltranstransferase (ec 2.5.1.10) (tm0161)2 from thermotoga maritima at 1.90 a resolution
16d1ezfa_



33.2 15
Fold:Terpenoid synthases
Superfamily:Terpenoid synthases
Family:Squalene synthase
17c6et5u_



31.9 22
PDB header:photosynthesis
Chain: U: PDB Molecule:light-harvesting protein b-1015 gamma chain;
PDBTitle: reaction centre light harvesting complex 1 from blc. virids
18c4qhuC_



31.9 75
PDB header:immune system
Chain: C: PDB Molecule:interleukin-17a;
PDBTitle: crystal structure of il-17a/fab6785 complex
19c5xn5A_



31.4 22
PDB header:transferase
Chain: A: PDB Molecule:os07g0580900 protein;
PDBTitle: homo-dimer crystal structure of geranylgeranyl diphosphate synthases 12 from oryza sativa
20c3oacD_



31.3 21
PDB header:transferase
Chain: D: PDB Molecule:geranyl diphosphate synthase large subunit;
PDBTitle: mint deletion mutant of heterotetrameric geranyl pyrophosphate2 synthase in complex with ligands
21c5iysA_



not modelled 30.9 19
PDB header:transferase/transferase inhibitor
Chain: A: PDB Molecule:phytoene synthase;
PDBTitle: crystal structure of a dehydrosqualene synthase in complex with ligand
22c3npkB_



not modelled 27.8 23
PDB header:transferase
Chain: B: PDB Molecule:geranyltranstransferase;
PDBTitle: the crystal structure of geranyltranstransferase from campylobacter2 jejuni
23c2j1oA_



not modelled 27.4 14
PDB header:transferase
Chain: A: PDB Molecule:geranylgeranyl pyrophosphate synthetase;
PDBTitle: geranylgeranyl diphosphate synthase from sinapis alba
24c4hd1A_



not modelled 26.0 31
PDB header:transferase
Chain: A: PDB Molecule:squalene synthase hpnc;
PDBTitle: crystal structure of squalene synthase hpnc from alicyclobacillus2 acidocaldarius
25d2diga1



not modelled 25.4 53
Fold:SH3-like barrel
Superfamily:Tudor/PWWP/MBT
Family:Tudor domain
26c4lltB_



not modelled 24.8 15
PDB header:transferase
Chain: B: PDB Molecule:geranyltranstransferase;
PDBTitle: crystal structure of a farnesyl diphosphate synthase from roseobacter2 denitrificans och 114, target efi-509393, with two ipp and calcium3 bound in active site
27c5aypA_



not modelled 24.7 16
PDB header:transferase
Chain: A: PDB Molecule:farnesyl diphosphate synthase;
PDBTitle: crystal structure of bacillus stearothermophilus farnesyl2 pyrophosphate synthase
28c3ipiA_



not modelled 23.5 12
PDB header:transferase
Chain: A: PDB Molecule:geranyltranstransferase;
PDBTitle: crystal structure of a geranyltranstransferase from the methanosarcina2 mazei
29d1jo5a_



not modelled 23.3 25
Fold:Light-harvesting complex subunits
Superfamily:Light-harvesting complex subunits
Family:Light-harvesting complex subunits
30c5uxmA_



not modelled 23.2 22
PDB header:transferase
Chain: A: PDB Molecule:phospho-2-dehydro-3-deoxyheptonate aldolase;
PDBTitle: type ii dah7ps from pseudomonas aeruginosa with trp bound
31c5hudA_



not modelled 22.9 22
PDB header:transferase/isomerase
Chain: A: PDB Molecule:3-deoxy-d-arabino-heptulosonate 7-phosphate (dahp)
PDBTitle: non-covalent complex of and dahp synthase and chorismate mutase from2 corynebacterium glutamicum with bound transition state analog
32d2b7oa1



not modelled 22.0 16
Fold:TIM beta/alpha-barrel
Superfamily:Aldolase
Family:Class-II DAHP synthetase
33c6bmcA_



not modelled 21.2 11
PDB header:transferase
Chain: A: PDB Molecule:phospho-2-dehydro-3-deoxyheptonate aldolase;
PDBTitle: the structure of a dimeric type ii dah7ps associated with pyocyanin2 biosynthesis in pseudomonas aeruginosa
34c3we9A_



not modelled 20.7 21
PDB header:transferase
Chain: A: PDB Molecule:putative phytoene/squalene synthase yisp;
PDBTitle: the crystal structure of yisp from bacillus subtilis subsp. subtilis2 strain 168
35c3llwA_



not modelled 20.3 20
PDB header:transferase
Chain: A: PDB Molecule:geranyltranstransferase (ispa);
PDBTitle: crystal structure of geranyltransferase from helicobacter pylori 26695
36c2aydA_



not modelled 20.3 44
PDB header:transcription
Chain: A: PDB Molecule:wrky transcription factor 1;
PDBTitle: crystal structure of the c-terminal wrky domainof atwrky1, an sa-2 induced and partially npr1-dependent transcription factor
37c3kraB_



not modelled 19.8 13
PDB header:transferase
Chain: B: PDB Molecule:geranyl diphosphate synthase small subunit;
PDBTitle: mint heterotetrameric geranyl pyrophosphate synthase in complex with2 magnesium
38c3p8lB_



not modelled 19.6 17
PDB header:transferase
Chain: B: PDB Molecule:geranyltranstransferase;
PDBTitle: crystal structure of polyprenyl synthase from enterococcus faecalis2 v583
39d1wj2a_



not modelled 19.6 38
Fold:WRKY DNA-binding domain
Superfamily:WRKY DNA-binding domain
Family:WRKY DNA-binding domain
40c2h8oA_



not modelled 19.1 15
PDB header:transferase
Chain: A: PDB Molecule:geranyltranstransferase;
PDBTitle: the 1.6a crystal structure of the geranyltransferase from2 agrobacterium tumefaciens
41c2azjB_



not modelled 19.0 15
PDB header:transferase
Chain: B: PDB Molecule:geranylgeranyl pyrophosphate synthetase;
PDBTitle: crystal structure for the mutant d81c of sulfolobus2 solfataricus hexaprenyl pyrophosphate synthase
42c2lurA_



not modelled 19.0 78
PDB header:plant protein
Chain: A: PDB Molecule:kalata;
PDBTitle: nmr solution structure of kb1[ghrw;23-28]
43c4lfgB_



not modelled 16.9 15
PDB header:transferase
Chain: B: PDB Molecule:geranylgeranyl diphosphate synthase;
PDBTitle: crystal structure of geranylgeranyl diphosphate synthase sub12742 (target efi-509455) from streptococcus uberis 0140j with bound3 magnesium and isopentyl diphosphate, fully liganded complex;
44c2digA_



not modelled 16.1 44
PDB header:dna binding protein
Chain: A: PDB Molecule:lamin-b receptor;
PDBTitle: solusion structure of the todor domain of human lamin-b2 receptor
45c6dhrA_



not modelled 15.8 78
PDB header:plant protein
Chain: A: PDB Molecule:rivi3;
PDBTitle: nmr solution structure of rivi3
46c3lsnA_



not modelled 15.3 15
PDB header:transferase
Chain: A: PDB Molecule:geranyltranstransferase;
PDBTitle: crystal structure of putative geranyltranstransferase from pseudomonas2 fluorescens pf-5 complexed with magnesium
47c2o1oB_



not modelled 15.2 13
PDB header:structural genomics, unknown function
Chain: B: PDB Molecule:putative farnesyl pyrophosphate synthase;
PDBTitle: cryptosporidium parvum putative polyprenyl pyrophosphate synthase2 (cgd4_2550) in complex with risedronate.
48d1rqja_



not modelled 15.0 16
Fold:Terpenoid synthases
Superfamily:Terpenoid synthases
Family:Isoprenyl diphosphate synthases
49d1rtra_



not modelled 14.8 18
Fold:Terpenoid synthases
Superfamily:Terpenoid synthases
Family:Isoprenyl diphosphate synthases
50c3ucaB_



not modelled 14.7 16
PDB header:transferase
Chain: B: PDB Molecule:geranyltranstransferase;
PDBTitle: crystal structure of isoprenoid synthase (target efi-501974) from2 clostridium perfringens
51c3ghnA_



not modelled 14.6 38
PDB header:hydrolase
Chain: A: PDB Molecule:a disintegrin and metalloproteinase with thrombospondin
PDBTitle: crystal structure of the exosite-containing fragment of human adamts132 (form-2)
52c3a9kC_



not modelled 14.3 67
PDB header:signaling protein/metal binding protein
Chain: C: PDB Molecule:mitogen-activated protein kinase kinase kinase 7-
PDBTitle: crystal structure of the mouse tab3-nzf in complex with2 lys63-linked di-ubiquitin
53d2q80a1



not modelled 13.4 8
Fold:Terpenoid synthases
Superfamily:Terpenoid synthases
Family:Isoprenyl diphosphate synthases
54d2k4xa1



not modelled 12.7 50
Fold:Rubredoxin-like
Superfamily:Zn-binding ribosomal proteins
Family:Ribosomal protein S27a
55c1l2yA_



not modelled 12.3 100
PDB header:de novo protein
Chain: A: PDB Molecule:tc5b;
PDBTitle: nmr structure of trp-cage miniprotein construct tc5b
56c1orxA_



not modelled 12.1 78
PDB header:antibiotic
Chain: A: PDB Molecule:kalata b1;
PDBTitle: solution structure of the acyclic permutant des-(24-28)-2 kalata b1.
57c1rijA_



not modelled 11.6 100
PDB header:de novo protein
Chain: A: PDB Molecule:e6apn1 peptide;
PDBTitle: e6-bind trp-cage (e6apn1)
58c2jofA_



not modelled 11.6 100
PDB header:de novo protein
Chain: A: PDB Molecule:trp-cage;
PDBTitle: the trp-cage: optimizing the stability of a globular2 miniprotein
59d2a1jb1



not modelled 11.5 13
Fold:SAM domain-like
Superfamily:RuvA domain 2-like
Family:Hef domain-like
60c6ir8A_



not modelled 11.2 33
PDB header:transcription/dna
Chain: A: PDB Molecule:oswrky45;
PDBTitle: rice wrky/dna complex
61c3uc7F_



not modelled 10.8 100
PDB header:de novo protein
Chain: F: PDB Molecule:cyclo-tc1;
PDBTitle: trp-cage cyclo-tc1 - monoclinic crystal form
62c2ll5A_



not modelled 10.8 100
PDB header:de novo protein
Chain: A: PDB Molecule:cyclo-tc1;
PDBTitle: cyclo-tc1 trp-cage
63c3uc8C_



not modelled 10.8 100
PDB header:de novo protein
Chain: C: PDB Molecule:cyclo-tc1;
PDBTitle: trp-cage cyclo-tc1 - tetragonal crystal form
64c3uc7B_



not modelled 10.8 100
PDB header:de novo protein
Chain: B: PDB Molecule:cyclo-tc1;
PDBTitle: trp-cage cyclo-tc1 - monoclinic crystal form
65c3uc8A_



not modelled 10.8 100
PDB header:de novo protein
Chain: A: PDB Molecule:cyclo-tc1;
PDBTitle: trp-cage cyclo-tc1 - tetragonal crystal form
66c3uc7A_



not modelled 10.8 100
PDB header:de novo protein
Chain: A: PDB Molecule:cyclo-tc1;
PDBTitle: trp-cage cyclo-tc1 - monoclinic crystal form
67c3uc7C_



not modelled 10.8 100
PDB header:de novo protein
Chain: C: PDB Molecule:cyclo-tc1;
PDBTitle: trp-cage cyclo-tc1 - monoclinic crystal form
68c3uc8B_



not modelled 10.8 100
PDB header:de novo protein
Chain: B: PDB Molecule:cyclo-tc1;
PDBTitle: trp-cage cyclo-tc1 - tetragonal crystal form
69c3uc7D_



not modelled 10.8 100
PDB header:de novo protein
Chain: D: PDB Molecule:cyclo-tc1;
PDBTitle: trp-cage cyclo-tc1 - monoclinic crystal form
70c2e8xB_



not modelled 10.6 17
PDB header:transferase
Chain: B: PDB Molecule:geranylgeranyl pyrophosphate synthetase;
PDBTitle: s. cerevisiae geranylgeranyl pyrophosphate synthase in2 complex with magnesium and gpp
71c3uc7E_



not modelled 10.6 100
PDB header:de novo protein
Chain: E: PDB Molecule:cyclo-tc1;
PDBTitle: trp-cage cyclo-tc1 - monoclinic crystal form
72c3wccC_



not modelled 10.6 15
PDB header:transferase
Chain: C: PDB Molecule:farnesyltransferase, putative;
PDBTitle: the complex structure of tcsqs with ligand, e5700
73c2lk1A_



not modelled 10.5 42
PDB header:rna binding protein
Chain: A: PDB Molecule:rna-binding protein 5;
PDBTitle: solution structure and binding studies of the ranbp2-type zinc finger2 of rbm5
74c2jwmA_



not modelled 10.4 56
PDB header:plant protein
Chain: A: PDB Molecule:kalata-b7;
PDBTitle: nmr spatial srtucture of ternary complex kalata b7/mn2+/dpc2 micelle
75c2lk0A_



not modelled 10.4 42
PDB header:rna binding protein
Chain: A: PDB Molecule:rna-binding protein 5;
PDBTitle: solution structure and binding studies of the ranbp2-type zinc finger2 of rbm5
76c5w3xD_



not modelled 10.0 38
PDB header:transcription
Chain: D: PDB Molecule:disease resistance protein rrs1;
PDBTitle: crystal structure of popp2 in complex with ip6, accoa and the wrky2 domain of rrs1-r .
77d1u5sb2



not modelled 10.0 44
Fold:Glucocorticoid receptor-like (DNA-binding domain)
Superfamily:Glucocorticoid receptor-like (DNA-binding domain)
Family:LIM domain
78c1n0zA_



not modelled 10.0 47
PDB header:transcription
Chain: A: PDB Molecule:znf265;
PDBTitle: solution structure of the first zinc-finger domain from2 znf265
79c2mutA_



not modelled 9.7 13
PDB header:hydrolase
Chain: A: PDB Molecule:dna excision repair protein ercc-1;
PDBTitle: solution structure of the f231l mutant ercc1-xpf dimerization region
80c3cp6A_



not modelled 9.6 15
PDB header:transferase
Chain: A: PDB Molecule:farnesyl pyrophosphate synthetase;
PDBTitle: crystal structure of human farnesyl diphosphate synthase (t201a2 mutant) complexed with mg and biphosphonate inhibitor
81c3hkzP_



not modelled 9.4 50
PDB header:transferase
Chain: P: PDB Molecule:dna-directed rna polymerase subunit p;
PDBTitle: the x-ray crystal structure of rna polymerase from archaea
82c5xj6A_



not modelled 9.4 18
PDB header:transferase
Chain: A: PDB Molecule:glycerol-3-phosphate acyltransferase;
PDBTitle: crystal structure of plsy (ygih), an integral membrane glycerol 3-2 phosphate acyltransferase - the glycerol 3-phosphate form
83d1n1ua_



not modelled 9.4 67
Fold:Knottins (small inhibitors, toxins, lectins)
Superfamily:Cyclotides
Family:Kalata B1
84c1n1uA_



not modelled 9.4 67
PDB header:antibiotic
Chain: A: PDB Molecule:kalata b1;
PDBTitle: nmr structure of [ala1,15]kalata b1
85c2f2iA_



not modelled 9.1 56
PDB header:antimicrobial protein
Chain: A: PDB Molecule:kalata-b1;
PDBTitle: solution structure of [p20d,v21k]-kalata b1
86c5h7yB_



not modelled 8.9 83
PDB header:hydrolase inhibitor/peptide
Chain: B: PDB Molecule:uncharacterized protein;
PDBTitle: structure of immunity protein tplei of t6ss from pseudomonas2 aeruginosa complexed with "l" peptide
87c2ldsA_



not modelled 8.9 75
PDB header:toxin
Chain: A: PDB Molecule:insecticidal toxin lait1;
PDBTitle: solution structure of a short-chain lait1 from the venom of scorpion2 liocheles australasiae
88c3g9yA_



not modelled 8.8 42
PDB header:transcription/rna
Chain: A: PDB Molecule:zinc finger ran-binding domain-containing protein 2;
PDBTitle: crystal structure of the second zinc finger from zranb2/znf265 bound2 to 6 nt ssrna sequence agguaa
89c1nb1A_



not modelled 8.8 78
PDB header:antibiotic
Chain: A: PDB Molecule:kalata b1;
PDBTitle: high resolution solution structure of kalata b1
90d1nb1a_



not modelled 8.8 78
Fold:Knottins (small inhibitors, toxins, lectins)
Superfamily:Cyclotides
Family:Kalata B1
91d1pt4a_



not modelled 8.7 56
Fold:Knottins (small inhibitors, toxins, lectins)
Superfamily:Cyclotides
Family:Kalata B1
92c2f2jA_



not modelled 8.6 56
PDB header:antimicrobial protein
Chain: A: PDB Molecule:kalata-b1;
PDBTitle: solution structure of [w19k, p20n, v21k]-kalata b1
93c2m9oA_



not modelled 8.6 56
PDB header:plant protein
Chain: A: PDB Molecule:kalata-b7;
PDBTitle: solution structure of kalata b7
94d2aq0a1



not modelled 8.4 18
Fold:SAM domain-like
Superfamily:RuvA domain 2-like
Family:Hef domain-like
95c5e8kA_



not modelled 8.1 18
PDB header:transferase
Chain: A: PDB Molecule:geranylgeranyl pyrophosphate synthase 10, mitochondrial;
PDBTitle: crystal structure of polyprenyl pyrophosphate synthase 2 from2 arabidopsis thaliana
96c1kalA_



not modelled 8.1 100
PDB header:plant protein
Chain: A: PDB Molecule:kalata b1;
PDBTitle: elucidation of the primary and three-dimensional structure2 of the uterotonic polypeptide kalata b1
97c1jjzA_



not modelled 8.1 78
PDB header:plant protein
Chain: A: PDB Molecule:kalata b1;
PDBTitle: refined structure and disulfide pairing of the kalata b12 peptide
98c1k48A_



not modelled 8.1 78
PDB header:plant protein
Chain: A: PDB Molecule:kalata b1;
PDBTitle: refined structure and disulfide pairing of the kalata b12 peptide
99c4ttnA_



not modelled 7.9 78
PDB header:plant protein
Chain: A: PDB Molecule:kalata-b1;
PDBTitle: quasi-racemic structure of [g6a]kalata b1

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Transmembrane helix prediction 

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