Phyre Home Retrieve Phyre Job Id
Emailmdejesus@rockefeller.edu
DescriptionRVBD0471c_(-)_562228_562716
DateTue Jul 23 14:50:55 BST 2019
Unique Job ID0c7c4a0f03b30461
SequenceMPDAGAGSRL ... Download FASTA
Job Typenormal
Job Expiry

Summary 

Top model
Image coloured by rainbow N → C terminus
Model dimensions (Å):X:30.632 Y:50.591 Z:48.237
Model (left) based on template c4od5C_
Top template information
PDB header:transferase
Chain: C: PDB Molecule:4-hydroxybenzoate octaprenyltransferase;
PDBTitle: substrate-bound structure of a ubia homolog from aeropyrum pernix k1
Confidence and coverage
Confidence: 97.9% Coverage: 43%
69 residues ( 43% of your sequence) have been modelled with 97.9% confidence by the single highest scoring template.
You may wish to submit your sequence to Phyrealarm. This will automatically scan your sequence every week for new potential templates as they appear in the Phyre2 library.
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Sequence analysis 

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Secondary structure and disorder prediction [Show] 

Domain analysis [Show] 

Detailed template information [Hide] 

 

#
Template Alignment Coverage3D Model Confidence
% i.d. Template Information
1c4od5C_



97.9 22
PDB header:transferase
Chain: C: PDB Molecule:4-hydroxybenzoate octaprenyltransferase;
PDBTitle: substrate-bound structure of a ubia homolog from aeropyrum pernix k1
2c3llwA_



38.5 11
PDB header:transferase
Chain: A: PDB Molecule:geranyltranstransferase (ispa);
PDBTitle: crystal structure of geranyltransferase from helicobacter pylori 26695
3c2momC_



28.3 30
PDB header:membrane protein
Chain: C: PDB Molecule:lysosome-associated membrane glycoprotein 2;
PDBTitle: structural insights of tm domain of lamp-2a in dpc micelles
4c2momB_



25.7 30
PDB header:membrane protein
Chain: B: PDB Molecule:lysosome-associated membrane glycoprotein 2;
PDBTitle: structural insights of tm domain of lamp-2a in dpc micelles
5c5jfqB_



24.1 18
PDB header:oxidoreductase
Chain: B: PDB Molecule:geranylgeranyl pyrophosphate synthetase;
PDBTitle: geranylgeranyl pyrophosphate synthetase from archaeon geoglobus2 acetivorans
6c3p8rA_



19.1 13
PDB header:transferase
Chain: A: PDB Molecule:geranyltranstransferase;
PDBTitle: crystal structure of polyprenyl synthase from vibrio cholerae
7c2l4fA_



18.4 40
PDB header:protein binding
Chain: A: PDB Molecule:defective in cullin neddylation protein 1;
PDBTitle: nmr structure of the uba domain of s. cerevisiae dcn1 bound to2 ubiquitin
8c3m9uD_



16.5 7
PDB header:transferase
Chain: D: PDB Molecule:farnesyl-diphosphate synthase;
PDBTitle: crystal structure of geranylgeranyl pyrophosphate synthase from2 lactobacillus brevis atcc 367
9c2hxgB_



15.9 20
PDB header:isomerase
Chain: B: PDB Molecule:l-arabinose isomerase;
PDBTitle: crystal structure of mn2+ bound ecai
10c3ts7B_



14.8 13
PDB header:transferase
Chain: B: PDB Molecule:geranyltranstransferase;
PDBTitle: crystal structure of farnesyl diphosphate synthase (target efi-501951)2 from methylococcus capsulatus
11c5xn5A_



13.8 6
PDB header:transferase
Chain: A: PDB Molecule:os07g0580900 protein;
PDBTitle: homo-dimer crystal structure of geranylgeranyl diphosphate synthases 12 from oryza sativa
12c2fnqB_



12.7 19
PDB header:oxidoreductase
Chain: B: PDB Molecule:allene oxide synthase-lipoxygenase protein;
PDBTitle: insights from the x-ray crystal structure of coral 8r-2 lipoxygenase: calcium activation via a c2-like domain and3 a structural basis of product chirality
13d1kn0a_



12.4 29
Fold:dsRBD-like
Superfamily:dsRNA-binding domain-like
Family:The homologous-pairing domain of Rad52 recombinase
14c3vf1A_



10.8 17
PDB header:oxidoreductase
Chain: A: PDB Molecule:11r-lipoxygenase;
PDBTitle: structure of a calcium-dependent 11r-lipoxygenase suggests a mechanism2 for ca-regulation
15c2p0mB_



10.7 10
PDB header:oxidoreductase
Chain: B: PDB Molecule:arachidonate 15-lipoxygenase;
PDBTitle: revised structure of rabbit reticulocyte 15s-lipoxygenase
16c5fnoB_



10.4 19
PDB header:oxidoreductase
Chain: B: PDB Molecule:manganese lipoxygenase;
PDBTitle: manganese lipoxygenase
17c5h1qC_



9.7 16
PDB header:transport protein
Chain: C: PDB Molecule:innexin-6;
PDBTitle: c. elegans inx-6 gap junction hemichannel
18d1r4pb_



9.1 22
Fold:OB-fold
Superfamily:Bacterial enterotoxins
Family:Bacterial AB5 toxins, B-subunits
19c4f62B_



9.1 10
PDB header:transferase
Chain: B: PDB Molecule:geranyltranstransferase;
PDBTitle: crystal structure of a putative farnesyl-diphosphate synthase from2 marinomonas sp. med121 (target efi-501980)
20c5fx8A_



9.0 21
PDB header:oxidoreductase
Chain: A: PDB Molecule:linoleate 11-lipoxygenase;
PDBTitle: complete structure of manganese lipoxygenase of gaeumannomyces2 graminis and partial structure of zonadhesin of komagataella3 pastoris
21d2bosa_



not modelled 8.3 20
Fold:OB-fold
Superfamily:Bacterial enterotoxins
Family:Bacterial AB5 toxins, B-subunits
22c3o8yA_



not modelled 8.1 24
PDB header:oxidoreductase
Chain: A: PDB Molecule:arachidonate 5-lipoxygenase;
PDBTitle: stable-5-lipoxygenase
23c2o1oB_



not modelled 8.0 10
PDB header:structural genomics, unknown function
Chain: B: PDB Molecule:putative farnesyl pyrophosphate synthase;
PDBTitle: cryptosporidium parvum putative polyprenyl pyrophosphate synthase2 (cgd4_2550) in complex with risedronate.
24c1z65A_



not modelled 7.3 17
PDB header:unknown function
Chain: A: PDB Molecule:prion-like protein doppel;
PDBTitle: mouse doppel 1-30 peptide
25c2forB_



not modelled 7.1 15
PDB header:transferase
Chain: B: PDB Molecule:geranyltranstransferase;
PDBTitle: crystal structure of the shigella flexneri farnesyl pyrophosphate2 synthase complex with an isopentenyl pyrophosphate
26c1wmwA_



not modelled 7.1 16
PDB header:transferase
Chain: A: PDB Molecule:geranylgeranyl diphosphate synthetase;
PDBTitle: crystal structure of geranulgeranyl diphosphate synthase from thermus2 thermophilus
27c5nx6A_



not modelled 6.8 14
PDB header:lyase
Chain: A: PDB Molecule:pentalenene synthase;
PDBTitle: crystal structure of 1,8-cineole synthase from streptomyces2 clavuligerus in complex with 2-fluoroneryl diphosphate
28c2azjB_



not modelled 6.7 6
PDB header:transferase
Chain: B: PDB Molecule:geranylgeranyl pyrophosphate synthetase;
PDBTitle: crystal structure for the mutant d81c of sulfolobus2 solfataricus hexaprenyl pyrophosphate synthase
29c2n2sA_



not modelled 6.2 70
PDB header:signaling protein
Chain: A: PDB Molecule:pheromone ep-1;
PDBTitle: nmr solution structure of the pheromone ep-1 from euplotes petzi
30d3bnea1



not modelled 6.2 19
Fold:Lipoxigenase
Superfamily:Lipoxigenase
Family:Plant lipoxigenases
31c1h2iG_



not modelled 6.2 29
PDB header:dna binding protein
Chain: G: PDB Molecule:dna repair protein rad52 homolog;
PDBTitle: human rad52 protein, n-terminal domain
32c2qnlA_



not modelled 5.8 21
PDB header:signaling protein
Chain: A: PDB Molecule:uncharacterized protein;
PDBTitle: crystal structure of a putative dna damage-inducible protein2 (chu_0679) from cytophaga hutchinsonii atcc 33406 at 1.50 a3 resolution
33c2kqdA_



not modelled 5.5 44
PDB header:lyase
Chain: A: PDB Molecule:aprataxin and pnk-like factor;
PDBTitle: first pbz domain of human aplf protein in complex with2 ribofuranosyladenosine
34c6mq2D_



not modelled 5.3 17
PDB header:de novo protein
Chain: D: PDB Molecule:mini-evgl membrane protein;
PDBTitle: de novo design of membrane protein--mini-evgl membrane protein, c22212 form-2
35d1n81a_



not modelled 5.2 18
Fold:Gametocyte protein Pfg27
Superfamily:Gametocyte protein Pfg27
Family:Gametocyte protein Pfg27
36c6mpwD_



not modelled 5.0 17
PDB header:de novo protein
Chain: D: PDB Molecule:mini-evgl membrane protein;
PDBTitle: de novo design of membrane protein--mini-evgl membrane protein, c22212 form-1

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Transmembrane helix prediction 

Transmembrane helices have been predicted in your sequence to adopt the topology shown below