Phyre Home Retrieve Phyre Job Id
Emailmdejesus@rockefeller.edu
DescriptionRVBD0475_(hbhA)_565800_566399
DateTue Jul 23 14:50:55 BST 2019
Unique Job IDeb3ef9de5eedcdfb
SequenceMAENSNIDDI ... Download FASTA
Job Typenormal
Job Expiry

Summary 

Top model
Image coloured by rainbow N → C terminus
Model dimensions (Å):X:47.421 Y:19.581 Z:47.541
Model (left) based on template c1nfoA_
Top template information
PDB header:lipid transport
Chain: A: PDB Molecule:apolipoprotein e2;
PDBTitle: apolipoprotein e2 (apoe2, d154a mutation)
Confidence and coverage
Confidence: 70.5% Coverage: 32%
63 residues ( 32% of your sequence) have been modelled with 70.5% confidence by the single highest scoring template.
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Sequence analysis 

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Secondary structure and disorder prediction [Show] 

Domain analysis [Show] 

Detailed template information [Hide] 

 

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Template Alignment Coverage3D Model Confidence
% i.d. Template Information
1c1nfoA_



70.5 22
PDB header:lipid transport
Chain: A: PDB Molecule:apolipoprotein e2;
PDBTitle: apolipoprotein e2 (apoe2, d154a mutation)
2c6f7sB_



61.7 25
PDB header:rna binding protein
Chain: B: PDB Molecule:serrate rna effector molecule homolog;
PDBTitle: crystal structure of human ars2 residues 147-270 + 408-763 with2 deletion of loop b
3c2julA_



49.2 38
PDB header:dna binding protein
Chain: A: PDB Molecule:calsenilin;
PDBTitle: nmr structure of dream
4c6epgD_



29.1 35
PDB header:toxin
Chain: D: PDB Molecule:zeta_1 toxin;
PDBTitle: structure of the epsilon_1 / zeta_1 antitoxin / toxin system from2 neisseria gonorrhoeae.
5d1bjfa_



28.5 36
Fold:EF Hand-like
Superfamily:EF-hand
Family:Calmodulin-like
6c5x1hS_



28.3 19
PDB header:protein transport
Chain: S: PDB Molecule:icmj (dotn);
PDBTitle: structure of legionella pneumophila dotn
7c2yomA_



18.4 37
PDB header:signaling protein
Chain: A: PDB Molecule:sensory box protein;
PDBTitle: solution nmr structure of the c-terminal extension of two bacterial2 light, oxygen, voltage (lov) photoreceptor proteins from3 pseudomonas putida
8c1gw4A_



17.9 31
PDB header:high density lipoproteins
Chain: A: PDB Molecule:apoa-i;
PDBTitle: the helix-hinge-helix structural motif in human2 apolipoprotein a-i determined by nmr spectroscopy, 13 structure
9c4jo6Y_



16.8 31
PDB header:unknown function
Chain: Y: PDB Molecule:sbp-tag;
PDBTitle: streptavidin complex with sbp-tag
10c4jo6Z_



16.8 31
PDB header:unknown function
Chain: Z: PDB Molecule:sbp-tag;
PDBTitle: streptavidin complex with sbp-tag
11d1dgna_



16.4 17
Fold:DEATH domain
Superfamily:DEATH domain
Family:Caspase recruitment domain, CARD
12c5xzoA_



16.2 25
PDB header:hydrolase
Chain: A: PDB Molecule:beta-xylanase;
PDBTitle: crystal structure of gh10 xylanase xyl10c from bispora. sp mey-1
13c6cc4A_



15.9 28
PDB header:transport protein
Chain: A: PDB Molecule:soluble cytochrome b562, lipid ii flippase murj chimera;
PDBTitle: structure of murj from escherichia coli
14c5kwoA_



15.3 43
PDB header:de novo protein
Chain: A: PDB Molecule:designed peptide nc_ehe_d1;
PDBTitle: nmr solution structure of designed peptide nc_ehe_d1
15c6br8B_



14.8 27
PDB header:viral protein
Chain: B: PDB Molecule:protein a6 homolog;
PDBTitle: structure of a6 reveals a novel lipid transporter
16d1ae9a_



14.6 33
Fold:DNA breaking-rejoining enzymes
Superfamily:DNA breaking-rejoining enzymes
Family:Lambda integrase-like, catalytic core
17d1g8ia_



14.0 36
Fold:EF Hand-like
Superfamily:EF-hand
Family:Calmodulin-like
18d1ryla_



13.3 30
Fold:Hypothetical protein yfbM
Superfamily:Hypothetical protein yfbM
Family:Hypothetical protein yfbM
19c6conF_



12.6 22
PDB header:hydrolase
Chain: F: PDB Molecule:coa-transferase subunit beta;
PDBTitle: crystal structure of mycobacterium tuberculosis ipdab
20c2jo8B_



11.9 29
PDB header:transferase
Chain: B: PDB Molecule:serine/threonine-protein kinase 4;
PDBTitle: solution structure of c-terminal domain of human mammalian2 sterile 20-like kinase 1 (mst1)
21c6c52D_



not modelled 11.9 43
PDB header:de novo protein
Chain: D: PDB Molecule:cross-alpha amyloid-like structure alphatet;
PDBTitle: cross-alpha amyloid-like structure alphatet
22c6c52C_



not modelled 11.9 43
PDB header:de novo protein
Chain: C: PDB Molecule:cross-alpha amyloid-like structure alphatet;
PDBTitle: cross-alpha amyloid-like structure alphatet
23c6c52A_



not modelled 11.9 43
PDB header:de novo protein
Chain: A: PDB Molecule:cross-alpha amyloid-like structure alphatet;
PDBTitle: cross-alpha amyloid-like structure alphatet
24c6c52B_



not modelled 11.9 43
PDB header:de novo protein
Chain: B: PDB Molecule:cross-alpha amyloid-like structure alphatet;
PDBTitle: cross-alpha amyloid-like structure alphatet
25c4e1rA_



not modelled 11.7 27
PDB header:dna binding protein
Chain: A: PDB Molecule:protein lsr2;
PDBTitle: crystal structure of the dimerization domain of lsr2 from2 mycobacterium tuberculosis in the p 31 2 1 space group
26c4e1pA_



not modelled 11.7 27
PDB header:dna binding protein
Chain: A: PDB Molecule:protein lsr2;
PDBTitle: crystal structure of the dimerization domain of lsr2 from2 mycobacterium tuberculosis in the p 1 21 1 space group
27c2mwqA_



not modelled 11.6 27
PDB header:plant protein
Chain: A: PDB Molecule:oxygen-evolving enhancer protein 3, chloroplastic;
PDBTitle: solution structure of psbq from spinacia oleracea
28d1y0na_



not modelled 11.5 26
Fold:YehU-like
Superfamily:YehU-like
Family:YehU-like
29c6co6B_



not modelled 11.2 33
PDB header:hydrolase
Chain: B: PDB Molecule:probable coa-transferase beta subunit;
PDBTitle: crystal structure of rhodococcus jostii rha1 ipdab
30d1gs9a_



not modelled 10.7 25
Fold:Four-helical up-and-down bundle
Superfamily:Apolipoprotein
Family:Apolipoprotein
31c6alyA_



not modelled 10.7 24
PDB header:transcription
Chain: A: PDB Molecule:mediator of rna polymerase ii transcription subunit 15;
PDBTitle: solution structure of yeast med15 abd2 residues 277-368
32c6f1ux_



not modelled 10.6 32
PDB header:motor protein
Chain: X: PDB Molecule:bicd family-like cargo adapter 1;
PDBTitle: n terminal region of dynein tail domains in complex with dynactin2 filament and bicdr-1
33c4l0nG_



not modelled 10.6 36
PDB header:transferase
Chain: G: PDB Molecule:serine/threonine-protein kinase 3;
PDBTitle: crystal structure of stk3 (mst2) sarah domain
34c5wknD_



not modelled 10.4 36
PDB header:viral protein
Chain: D: PDB Molecule:phosphoprotein;
PDBTitle: crystal structure of the parainfluenza virus 5 nucleoprotein-2 phosphoprotein complex
35c5wknC_



not modelled 10.2 36
PDB header:viral protein
Chain: C: PDB Molecule:phosphoprotein;
PDBTitle: crystal structure of the parainfluenza virus 5 nucleoprotein-2 phosphoprotein complex
36c4bl6A_



not modelled 9.6 22
PDB header:protein transport
Chain: A: PDB Molecule:protein bicaudal d;
PDBTitle: bicaudal-d uses a parallel, homodimeric coiled coil with heterotypic2 registry to co-ordinate recruitment of cargos to dynein
37c3h36A_



not modelled 9.6 18
PDB header:transferase
Chain: A: PDB Molecule:polyribonucleotide nucleotidyltransferase;
PDBTitle: structure of an uncharacterized domain in polyribonucleotide2 nucleotidyltransferase from streptococcus mutans ua159
38c2v8gD_



not modelled 9.4 28
PDB header:hydrolase
Chain: D: PDB Molecule:beta-alanine synthase;
PDBTitle: crystal structure of beta-alanine synthase from2 saccharomyces kluyveri in complex with the product beta-3 alanine
39d2clyb1



not modelled 8.8 30
Fold:ATP synthase D chain-like
Superfamily:ATP synthase D chain-like
Family:ATP synthase D chain-like
40d1lqsl_



not modelled 8.7 40
Fold:4-helical cytokines
Superfamily:4-helical cytokines
Family:Interferons/interleukin-10 (IL-10)
41d1poia_



not modelled 8.6 16
Fold:NagB/RpiA/CoA transferase-like
Superfamily:NagB/RpiA/CoA transferase-like
Family:CoA transferase alpha subunit-like
42c4fqnC_



not modelled 8.5 25
PDB header:protein binding
Chain: C: PDB Molecule:malcavernin;
PDBTitle: crystal structure of the ccm2 c-terminal harmonin homology domain2 (hhd)
43c2zvwK_



not modelled 8.5 22
PDB header:dna binding protein
Chain: K: PDB Molecule:cyclin-dependent kinase inhibitor 1;
PDBTitle: crystal structure of proliferating cell nuclear antigen 22 and short peptide from human p21
44c2zvwP_



not modelled 8.5 22
PDB header:dna binding protein
Chain: P: PDB Molecule:cyclin-dependent kinase inhibitor 1;
PDBTitle: crystal structure of proliferating cell nuclear antigen 22 and short peptide from human p21
45c2zvwL_



not modelled 8.5 22
PDB header:dna binding protein
Chain: L: PDB Molecule:cyclin-dependent kinase inhibitor 1;
PDBTitle: crystal structure of proliferating cell nuclear antigen 22 and short peptide from human p21
46c2zvvX_



not modelled 8.5 22
PDB header:dna binding protein
Chain: X: PDB Molecule:cyclin-dependent kinase inhibitor 1;
PDBTitle: crystal structure of proliferating cellular nuclear antigen2 1 and short peptide from human p21
47c2zvwN_



not modelled 8.5 22
PDB header:dna binding protein
Chain: N: PDB Molecule:cyclin-dependent kinase inhibitor 1;
PDBTitle: crystal structure of proliferating cell nuclear antigen 22 and short peptide from human p21
48c2zvwO_



not modelled 8.5 22
PDB header:dna binding protein
Chain: O: PDB Molecule:cyclin-dependent kinase inhibitor 1;
PDBTitle: crystal structure of proliferating cell nuclear antigen 22 and short peptide from human p21
49c2zvwJ_



not modelled 8.5 22
PDB header:dna binding protein
Chain: J: PDB Molecule:cyclin-dependent kinase inhibitor 1;
PDBTitle: crystal structure of proliferating cell nuclear antigen 22 and short peptide from human p21
50c2zvwI_



not modelled 8.5 22
PDB header:dna binding protein
Chain: I: PDB Molecule:cyclin-dependent kinase inhibitor 1;
PDBTitle: crystal structure of proliferating cell nuclear antigen 22 and short peptide from human p21
51c2zvwM_



not modelled 8.5 22
PDB header:dna binding protein
Chain: M: PDB Molecule:cyclin-dependent kinase inhibitor 1;
PDBTitle: crystal structure of proliferating cell nuclear antigen 22 and short peptide from human p21
52d1kx9b_



not modelled 8.4 22
Fold:alpha-alpha superhelix
Superfamily:Chemosensory protein Csp2
Family:Chemosensory protein Csp2
53c5jbrA_



not modelled 8.4 22
PDB header:structural genomics, unknown function
Chain: A: PDB Molecule:uncharacterized protein bcav_2135;
PDBTitle: crystal structure of uncharacterized protein bcav_2135 from2 beutenbergia cavernae
54c2gvsA_



not modelled 8.3 19
PDB header:lipid binding protein
Chain: A: PDB Molecule:chemosensory protein csp-sg4;
PDBTitle: nmr solution structure of cspsg4
55c2ct9A_



not modelled 8.2 16
PDB header:metal binding protein
Chain: A: PDB Molecule:calcium-binding protein p22;
PDBTitle: the crystal structure of calcineurin b homologous proein 1 (chp1)
56d1o26a_



not modelled 8.1 24
Fold:Thymidylate synthase-complementing protein Thy1
Superfamily:Thymidylate synthase-complementing protein Thy1
Family:Thymidylate synthase-complementing protein Thy1
57d1c3ca_



not modelled 8.0 18
Fold:L-aspartase-like
Superfamily:L-aspartase-like
Family:L-aspartase/fumarase
58d1p9ba_



not modelled 8.0 11
Fold:P-loop containing nucleoside triphosphate hydrolases
Superfamily:P-loop containing nucleoside triphosphate hydrolases
Family:Nitrogenase iron protein-like
59c5uifC_



not modelled 8.0 12
PDB header:hydrolase
Chain: C: PDB Molecule:ps01740;
PDBTitle: crystal structure of native ps01740
60c5e0uE_



not modelled 7.9 25
PDB header:dna binding protein
Chain: E: PDB Molecule:cyclin-dependent kinase inhibitor 1;
PDBTitle: human pcna variant (s228i) complexed with p21 at 1.9 angstroms
61c3mlcC_



not modelled 7.7 19
PDB header:isomerase
Chain: C: PDB Molecule:fg41 malonate semialdehyde decarboxylase;
PDBTitle: crystal structure of fg41msad inactivated by 3-chloropropiolate
62c6c34A_



not modelled 7.7 16
PDB header:dna binding protein
Chain: A: PDB Molecule:5'-3' exonuclease;
PDBTitle: mycobacterium smegmatis dna flap endonuclease mutant d125n
63c3l0iA_



not modelled 7.6 44
PDB header:protein binding/protein transport
Chain: A: PDB Molecule:drra;
PDBTitle: complex structure of sidm/drra with the wild type rab1
64c2i5gB_



not modelled 7.4 17
PDB header:hydrolase
Chain: B: PDB Molecule:amidohydrolase;
PDBTitle: crystal strcuture of amidohydrolase from pseudomonas aeruginosa
65d1y0pa3



not modelled 7.4 19
Fold:Succinate dehydrogenase/fumarate reductase flavoprotein, catalytic domain
Superfamily:Succinate dehydrogenase/fumarate reductase flavoprotein, catalytic domain
Family:Succinate dehydrogenase/fumarate reductase flavoprotein, catalytic domain
66c6bn1A_



not modelled 7.3 15
PDB header:signaling protein
Chain: A: PDB Molecule:serine/threonine-protein kinase hippo;
PDBTitle: salvador hippo sarah domain complex
67c5h1nB_



not modelled 7.3 18
PDB header:unknown function
Chain: B: PDB Molecule:upf0253 protein yaep;
PDBTitle: crystal structure of sf173 from shigella flexneri
68c4xdnA_



not modelled 7.2 17
PDB header:cell cycle
Chain: A: PDB Molecule:mau2 chromatid cohesion factor homolog;
PDBTitle: crystal structure of scc4 in complex with scc2n
69d2odgc1



not modelled 7.1 21
Fold:LEM/SAP HeH motif
Superfamily:LEM domain
Family:LEM domain
70c4b1yM_



not modelled 7.0 41
PDB header:structural protein
Chain: M: PDB Molecule:phosphatase and actin regulator 1;
PDBTitle: structure of the phactr1 rpel-3 bound to g-actin
71d1r3na1



not modelled 7.0 30
Fold:Phosphorylase/hydrolase-like
Superfamily:Zn-dependent exopeptidases
Family:Bacterial dinuclear zinc exopeptidases
72c2l4hA_



not modelled 7.0 28
PDB header:metal binding protein
Chain: A: PDB Molecule:calcium and integrin-binding protein 1;
PDBTitle: the solution structure of calcium bound cib1
73c5b8iB_



not modelled 6.8 17
PDB header:hydrolase
Chain: B: PDB Molecule:calcineurin subunit b, variant;
PDBTitle: crystal structure of calcineurin a and calcineurin b in complex with2 fkbp12 and fk506 from coccidioides immitis rs
74c4uzmA_



not modelled 6.8 67
PDB header:structural protein
Chain: A: PDB Molecule:putative membrane protein igaa homolog;
PDBTitle: shotgun proteolysis: a practical application
75c2mbyA_



not modelled 6.7 21
PDB header:rna binding protein
Chain: A: PDB Molecule:ribosomal rna-processing protein 7;
PDBTitle: nmr structure of rrp7 c-terminal domain
76c3tweA_



not modelled 6.4 24
PDB header:unknown function
Chain: A: PDB Molecule:alpha4h;
PDBTitle: crystal structure of the de novo designed peptide alpha4h
77c2zkro_



not modelled 6.4 20
PDB header:ribosomal protein/rna
Chain: O: PDB Molecule:rna expansion segment es30;
PDBTitle: structure of a mammalian ribosomal 60s subunit within an 80s complex2 obtained by docking homology models of the rna and proteins into an3 8.7 a cryo-em map
78c4c9yB_



not modelled 6.4 17
PDB header:cell cycle
Chain: B: PDB Molecule:spindle and kinetochore-associated protein 1;
PDBTitle: structural basis for the microtubule binding of the human2 kinetochore ska complex
79c6idxA_



not modelled 6.4 21
PDB header:cell adhesion
Chain: A: PDB Molecule:engulfment and cell motility protein 2;
PDBTitle: crystal structure of bai1/elmo2 complex
80d1yqfa1



not modelled 6.3 33
Fold:Mitochondrial glycoprotein MAM33-like
Superfamily:Mitochondrial glycoprotein MAM33-like
Family:Mitochondrial glycoprotein MAM33-like
81d1n8va_



not modelled 6.2 16
Fold:alpha-alpha superhelix
Superfamily:Chemosensory protein Csp2
Family:Chemosensory protein Csp2
82d2vqca1



not modelled 6.2 24
Fold:DNA/RNA-binding 3-helical bundle
Superfamily:"Winged helix" DNA-binding domain
Family:F112-like
83c2vqcA_



not modelled 6.2 24
PDB header:dna binding protein
Chain: A: PDB Molecule:hypothetical 13.2 kda protein;
PDBTitle: structure of a dna binding winged-helix protein, f-112, from2 sulfolobus spindle-shaped virus 1.
84c2c1nA_



not modelled 6.1 18
PDB header:signaling protein
Chain: A: PDB Molecule:14-3-3 protein zeta/delta;
PDBTitle: molecular basis for the recognition of phosphorylated and2 phosphoacetylated histone h3 by 14-3-3
85c2pg1E_



not modelled 6.1 15
PDB header:structural protein
Chain: E: PDB Molecule:dynein light chain tctex-type;
PDBTitle: structural analysis of a cytoplasmic dynein light chain-2 intermediate chain complex
86c2p4fA_



not modelled 6.0 6
PDB header:chaperone
Chain: A: PDB Molecule:similar to sp
p32453 saccharomyces cerevisiae ynl315c
87d1p32a_



not modelled 5.9 33
Fold:Mitochondrial glycoprotein MAM33-like
Superfamily:Mitochondrial glycoprotein MAM33-like
Family:Mitochondrial glycoprotein MAM33-like
88c4ycgB_



not modelled 5.8 18
PDB header:cytokine
Chain: B: PDB Molecule:bone morphogenetic protein 9 growth factor domain;
PDBTitle: pro-bone morphogenetic protein 9
89d2cvoa2



not modelled 5.8 25
Fold:FwdE/GAPDH domain-like
Superfamily:Glyceraldehyde-3-phosphate dehydrogenase-like, C-terminal domain
Family:GAPDH-like
90c4etvA_



not modelled 5.8 33
PDB header:metal transport
Chain: A: PDB Molecule:ryanodine receptor 2;
PDBTitle: crystal structure of mouse ryanodine receptor 2 (2699-2904)
91c3cezA_



not modelled 5.7 28
PDB header:oxidoreductase
Chain: A: PDB Molecule:methionine-r-sulfoxide reductase;
PDBTitle: crystal structure of methionine-r-sulfoxide reductase from2 burkholderia pseudomallei
92c2ki0A_



not modelled 5.7 47
PDB header:de novo protein
Chain: A: PDB Molecule:ds119;
PDBTitle: nmr structure of a de novo designed beta alpha beta
93c2vs0B_



not modelled 5.7 23
PDB header:cell invasion
Chain: B: PDB Molecule:virulence factor esxa;
PDBTitle: structural analysis of homodimeric staphylococcal aureus2 virulence factor esxa
94d2ilka_



not modelled 5.6 35
Fold:4-helical cytokines
Superfamily:4-helical cytokines
Family:Interferons/interleukin-10 (IL-10)
95c3qv0A_



not modelled 5.6 33
PDB header:protein binding
Chain: A: PDB Molecule:mitochondrial acidic protein mam33;
PDBTitle: crystal structure of saccharomyces cerevisiae mam33
96c2lycA_



not modelled 5.5 10
PDB header:protein binding
Chain: A: PDB Molecule:spindle and kinetochore-associated protein 1 homolog;
PDBTitle: structure of c-terminal domain of ska1
97d1go3f_



not modelled 5.5 44
Fold:SAM domain-like
Superfamily:HRDC-like
Family:RNA polymerase II subunit RBP4 (RpoF)
98c4e1oC_



not modelled 5.5 19
PDB header:lyase
Chain: C: PDB Molecule:histidine decarboxylase;
PDBTitle: human histidine decarboxylase complex with histidine methyl ester2 (hme)
99d1rj9b1



not modelled 5.4 30
Fold:Four-helical up-and-down bundle
Superfamily:Domain of the SRP/SRP receptor G-proteins
Family:Domain of the SRP/SRP receptor G-proteins

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