Phyre Home Retrieve Phyre Job Id
Emailmdejesus@rockefeller.edu
DescriptionRVBD0479c_(-)_567924_568970
DateTue Jul 23 14:50:56 BST 2019
Unique Job IDb9e3b1eb11eb5c95
SequenceVTNPQGPPND ... Download FASTA
Job Typenormal
Job Expiry

Summary 

Top model
Image coloured by rainbow N → C terminus
Model dimensions (Å):X:26.431 Y:33.098 Z:36.482
Model (left) based on template d2bv3a3
Top template information
Fold:Ribosomal protein S5 domain 2-like
Superfamily:Ribosomal protein S5 domain 2-like
Family:Translational machinery components
Confidence and coverage
Confidence: 60.2% Coverage: 16%
56 residues ( 16% of your sequence) have been modelled with 60.2% confidence by the single highest scoring template.
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Warning: 56% of your sequence is predicted disordered. Disordered regions cannot be meaningfully predicted.
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Sequence analysis 

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Secondary structure and disorder prediction [Show] 

Domain analysis [Show] 

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#
Template Alignment Coverage3D Model Confidence
% i.d. Template Information
1d2bv3a3
60.2 21
Fold:Ribosomal protein S5 domain 2-like
Superfamily:Ribosomal protein S5 domain 2-like
Family:Translational machinery components
2c2qazC_
54.9 11
PDB header:hydrolase activator
Chain: C: PDB Molecule:sspb protein;
PDBTitle: structure of c. crescentus sspb ortholog
3c2qasA_
53.0 11
PDB header:hydrolase activator
Chain: A: PDB Molecule:hypothetical protein;
PDBTitle: crystal structure of caulobacter crescentus sspb ortholog
4d2nysa1
52.3 23
Fold:SspB-like
Superfamily:SspB-like
Family:AGR C 3712p-like
5c2nysA_
52.3 23
PDB header:structural genomics, unknown function
Chain: A: PDB Molecule:agr_c_3712p;
PDBTitle: x-ray crystal structure of protein agr_c_3712 from agrobacterium2 tumefaciens. northeast structural genomics consortium target atr88.
6d2dy1a3
44.5 10
Fold:Ribosomal protein S5 domain 2-like
Superfamily:Ribosomal protein S5 domain 2-like
Family:Translational machinery components
7c4ew8A_
38.7 19
PDB header:transferase
Chain: A: PDB Molecule:sensor protein divl;
PDBTitle: crystal structure of a c-terminal part of tyrosine kinase (divl) from2 caulobacter crescentus cb15 at 2.50 a resolution (psi community3 target, shapiro l.)
8c4i5sA_
35.5 18
PDB header:transferase
Chain: A: PDB Molecule:putative histidine kinase covs; vick-like protein;
PDBTitle: structure and function of sensor histidine kinase
9d1ghha_
31.4 13
Fold:DNA damage-inducible protein DinI
Superfamily:DNA damage-inducible protein DinI
Family:DNA damage-inducible protein DinI
10d2pila_
31.2 16
Fold:Pili subunits
Superfamily:Pili subunits
Family:Pilin
11c1spfA_
28.0 17
PDB header:lipoprotein(surface film)
Chain: A: PDB Molecule:pulmonary surfactant-associated polypeptide c;
PDBTitle: the nmr structure of the pulmonary surfactant-associated2 polypeptide sp-c in an apolar solvent contains a valyl-3 rich alpha-helix
12c3d2rB_
27.4 12
PDB header:transferase
Chain: B: PDB Molecule:[pyruvate dehydrogenase [lipoamide]] kinase isozyme 4;
PDBTitle: crystal structure of pyruvate dehydrogenase kinase isoform 4 in2 complex with adp
13c5o4uK_
25.1 19
PDB header:cell adhesion
Chain: K: PDB Molecule:flagellin;
PDBTitle: the flagellin of pyrococcus furiosus
14d1wlfa2
23.9 17
Fold:Double psi beta-barrel
Superfamily:ADC-like
Family:Cdc48 N-terminal domain-like
15c6btmA_
23.4 14
PDB header:membrane protein
Chain: A: PDB Molecule:alternative complex iii subunit a;
PDBTitle: structure of alternative complex iii from flavobacterium johnsoniae2 (wild type)
16c5ndaA_
23.2 24
PDB header:protein
Chain: A: PDB Molecule:rsp-c33leu -recombinant pulmonary surfactant-associated
PDBTitle: nmr structural characterisation of pharmaceutically relevant proteins2 obtained through a novel recombinant production: the case of the3 pulmonary surfactant polypeptide c analogue rsp-c33leu.
17c5f15A_
21.2 15
PDB header:transferase
Chain: A: PDB Molecule:4-amino-4-deoxy-l-arabinose (l-ara4n) transferase;
PDBTitle: crystal structure of arnt from cupriavidus metallidurans bound to2 undecaprenyl phosphate
18c2q8fA_
20.3 11
PDB header:transferase
Chain: A: PDB Molecule:[pyruvate dehydrogenase [lipoamide]] kinase isozyme 1;
PDBTitle: structure of pyruvate dehydrogenase kinase isoform 1
19d1oqwa_
18.8 29
Fold:Pili subunits
Superfamily:Pili subunits
Family:Pilin
20c2mvfA_
17.4 15
PDB header:ribosomal protein
Chain: A: PDB Molecule:uncharacterized protein;
PDBTitle: structural insight into an essential assembly factor network on the2 pre-ribosome
21c4fmtB_
not modelled 16.6 8
PDB header:transferase
Chain: B: PDB Molecule:chpt protein;
PDBTitle: crystal structure of a chpt protein (cc_3470) from caulobacter2 crescentus cb15 at 2.30 a resolution
22c2mi2A_
not modelled 16.2 38
PDB header:transport protein
Chain: A: PDB Molecule:sec-independent protein translocase protein tatb;
PDBTitle: solution structure of the e. coli tatb protein in dpc micelles
23c3o0rC_
not modelled 15.0 15
PDB header:immune system/oxidoreductase
Chain: C: PDB Molecule:nitric oxide reductase subunit c;
PDBTitle: crystal structure of nitric oxide reductase from pseudomonas2 aeruginosa in complex with antibody fragment
24c6j4oB_
not modelled 15.0 25
PDB header:hydrolase
Chain: B: PDB Molecule:small vasohibin-binding protein;
PDBTitle: structural basis of tubulin detyrosination by vasohibins-svbp enzyme2 complex and functional implications
25d1zgha1
not modelled 14.5 18
Fold:FMT C-terminal domain-like
Superfamily:FMT C-terminal domain-like
Family:Post formyltransferase domain
26c6fblA_
not modelled 13.9 24
PDB header:rna binding protein
Chain: A: PDB Molecule:mina-1;
PDBTitle: nmr solution structure of mina-1(254-334)
27c3sokB_
not modelled 13.9 19
PDB header:cell adhesion
Chain: B: PDB Molecule:fimbrial protein;
PDBTitle: dichelobacter nodosus pilin fima
28c5z1lL_
not modelled 13.8 16
PDB header:protein fibril
Chain: L: PDB Molecule:flagellin;
PDBTitle: cryo-em structure of methanoccus maripaludis archaellum
29c5tfyJ_
not modelled 13.5 9
PDB header:cell adhesion
Chain: J: PDB Molecule:flagellin;
PDBTitle: the archaeal flagellum of methanospirillum hungatei strain jf1.
30c4qpkA_
not modelled 12.8 7
PDB header:signaling protein
Chain: A: PDB Molecule:phosphotransferase;
PDBTitle: 1.7 angstrom structure of a bacterial phosphotransferase
31c2mv6A_
not modelled 12.5 42
PDB header:membrane protein
Chain: A: PDB Molecule:erythropoietin receptor;
PDBTitle: solution structure of the transmembrane domain and the juxta-membrane2 domain of the erythropoietin receptor in micelles
32c2bu8A_
not modelled 12.4 13
PDB header:transferase
Chain: A: PDB Molecule:pyruvate dehydrogenase kinase isoenzyme 2;
PDBTitle: crystal structures of human pyruvate dehydrogenase kinase 2 containing2 physiological and synthetic ligands
33c2na6A_
not modelled 12.1 43
PDB header:apoptosis
Chain: A: PDB Molecule:tumor necrosis factor receptor superfamily member 6;
PDBTitle: transmembrane domain of mouse fas/cd95 death receptor
34c2na6C_
not modelled 12.1 43
PDB header:apoptosis
Chain: C: PDB Molecule:tumor necrosis factor receptor superfamily member 6;
PDBTitle: transmembrane domain of mouse fas/cd95 death receptor
35c6f0kA_
not modelled 11.8 27
PDB header:membrane protein
Chain: A: PDB Molecule:cytochrome c family protein;
PDBTitle: alternative complex iii
36c6gv9K_
not modelled 11.3 11
PDB header:protein fibril
Chain: K: PDB Molecule:prepilin peptidase-dependent protein d;
PDBTitle: structure of the type iv pilus from enterohemorrhagic escherichia coli2 (ehec)
37c2mrnB_
not modelled 10.2 6
PDB header:dna binding protein
Chain: B: PDB Molecule:antitoxin maze;
PDBTitle: structure of truncated ecmaze
38c2na6B_
not modelled 10.2 43
PDB header:apoptosis
Chain: B: PDB Molecule:tumor necrosis factor receptor superfamily member 6;
PDBTitle: transmembrane domain of mouse fas/cd95 death receptor
39c6mitC_
not modelled 9.9 50
PDB header:lipid transport
Chain: C: PDB Molecule:lipopolysaccharide export system protein lptc;
PDBTitle: lptbfgc from enterobacter cloacae
40c6ekvA_
not modelled 9.8 11
PDB header:lipid binding protein
Chain: A: PDB Molecule:toxin complex component orf-x2;
PDBTitle: structure of orfx2 from clostridium botulinum a2
41c6em5r_
not modelled 9.8 15
PDB header:ribosome
Chain: R: PDB Molecule:60s ribosomal protein l19-a;
PDBTitle: state d architectural model (nsa1-tap flag-ytm1) - visualizing the2 assembly pathway of nucleolar pre-60s ribosomes
42c6ochB_
not modelled 9.4 25
PDB header:hydrolase/hydrolase inhibitor
Chain: B: PDB Molecule:small vasohibin-binding protein;
PDBTitle: crystal structure of vash1-svbp complex bound with parthenolide
43c6c6lO_
not modelled 9.4 29
PDB header:membrane protein
Chain: O: PDB Molecule:v-type proton atpase subunit f;
PDBTitle: yeast vacuolar atpase vo in lipid nanodisc
44c3ipdB_
not modelled 9.3 17
PDB header:exocytosis
Chain: B: PDB Molecule:syntaxin-1a;
PDBTitle: helical extension of the neuronal snare complex into the2 membrane, spacegroup i 21 21 21
45c6qbyB_
not modelled 9.2 25
PDB header:cytosolic protein
Chain: B: PDB Molecule:small vasohibin-binding protein;
PDBTitle: crystal structure of vash 2 in complex with svbp
46c6nvqB_
not modelled 9.2 25
PDB header:hydrolase
Chain: B: PDB Molecule:small vasohibin-binding protein;
PDBTitle: crystal structure of the vash1-svbp complex
47c2e1mA_
not modelled 9.1 11
PDB header:oxidoreductase
Chain: A: PDB Molecule:l-glutamate oxidase;
PDBTitle: crystal structure of l-glutamate oxidase from streptomyces sp. x-119-6
48c6j4uB_
not modelled 9.0 25
PDB header:hydrolase
Chain: B: PDB Molecule:small vasohibin-binding protein;
PDBTitle: structural basis of tubulin detyrosination by vasohibins-svbp enzyme2 complex and functional implications
49c6j4qK_
not modelled 9.0 24
PDB header:hydrolase
Chain: K: PDB Molecule:small vasohibin-binding protein;
PDBTitle: structural basis of tubulin detyrosination by vasohibins-svbp enzyme2 complex and functional implications
50c6qbyD_
not modelled 8.9 24
PDB header:cytosolic protein
Chain: D: PDB Molecule:small vasohibin-binding protein;
PDBTitle: crystal structure of vash 2 in complex with svbp
51c2j7aC_
not modelled 8.8 3
PDB header:oxidoreductase
Chain: C: PDB Molecule:cytochrome c quinol dehydrogenase nrfh;
PDBTitle: crystal structure of cytochrome c nitrite reductase nrfha2 complex from desulfovibrio vulgaris
52d2od6a1
not modelled 8.7 47
Fold:Ferredoxin-like
Superfamily:Dimeric alpha+beta barrel
Family:Marine metagenome family DABB1
53c4dblB_
not modelled 8.6 14
PDB header:transport protein
Chain: B: PDB Molecule:vitamin b12 import system permease protein btuc;
PDBTitle: crystal structure of e159q mutant of btucdf
54c6gwjB_
not modelled 8.6 12
PDB header:rna binding protein
Chain: B: PDB Molecule:ekc/keops complex subunit lage3;
PDBTitle: protein complex
55c6j4sB_
not modelled 8.3 25
PDB header:hydrolase
Chain: B: PDB Molecule:small vasohibin-binding protein;
PDBTitle: structural basis of tubulin detyrosination by vasohibins-svbp enzyme2 complex and functional implications
56c6j4qG_
not modelled 8.2 25
PDB header:hydrolase
Chain: G: PDB Molecule:small vasohibin-binding protein;
PDBTitle: structural basis of tubulin detyrosination by vasohibins-svbp enzyme2 complex and functional implications
57c4xtrG_
not modelled 8.2 16
PDB header:hydrolase/transport protein
Chain: G: PDB Molecule:pep12p;
PDBTitle: structure of get3 bound to the transmembrane domain of pep12
58c6adqP_
not modelled 8.1 26
PDB header:electron transport
Chain: P: PDB Molecule:prokaryotic respiratory supercomplex associate factor 1
PDBTitle: respiratory complex ciii2civ2sod2 from mycobacterium smegmatis
59c6jzcD_
not modelled 8.1 25
PDB header:cytosolic protein
Chain: D: PDB Molecule:small vasohibin-binding protein;
PDBTitle: structural basis of tubulin detyrosination
60c6j4qB_
not modelled 8.0 25
PDB header:hydrolase
Chain: B: PDB Molecule:small vasohibin-binding protein;
PDBTitle: structural basis of tubulin detyrosination by vasohibins-svbp enzyme2 complex and functional implications
61c6j4qD_
not modelled 7.9 25
PDB header:hydrolase
Chain: D: PDB Molecule:small vasohibin-binding protein;
PDBTitle: structural basis of tubulin detyrosination by vasohibins-svbp enzyme2 complex and functional implications
62d1ub4c_
not modelled 7.9 6
Fold:Double-split beta-barrel
Superfamily:AbrB/MazE/MraZ-like
Family:Kis/PemI addiction antidote
63c6j91A_
not modelled 7.7 23
PDB header:peptide binding protein/hydrolase
Chain: A: PDB Molecule:small vasohibin-binding protein;
PDBTitle: structure of a hypothetical protease
64c2jpwA_
not modelled 7.7 50
PDB header:contractile protein
Chain: A: PDB Molecule:troponin i, cardiac muscle;
PDBTitle: solution structure of the bisphosphorylated cardiac2 specific n-extension of cardiac troponin i
65c6j7bB_
not modelled 7.6 25
PDB header:hydrolase
Chain: B: PDB Molecule:small vasohibin-binding protein;
PDBTitle: crystal structure of vash1-svbp in complex with epoy
66c6jzcC_
not modelled 7.6 25
PDB header:cytosolic protein
Chain: C: PDB Molecule:small vasohibin-binding protein;
PDBTitle: structural basis of tubulin detyrosination
67c6jzdB_
not modelled 7.6 25
PDB header:cytosolic protein
Chain: B: PDB Molecule:small vasohibin-binding protein;
PDBTitle: crystal structure of peptide-bound vash2-svbp complex
68c5wd7A_
not modelled 7.6 13
PDB header:membrane protein
Chain: A: PDB Molecule:siad;
PDBTitle: structure of a bacterial polysialyltransferase in complex with2 fondaparinux
69d1ljma_
not modelled 7.5 12
Fold:Common fold of diphtheria toxin/transcription factors/cytochrome f
Superfamily:p53-like transcription factors
Family:RUNT domain
70c6j4vB_
not modelled 7.4 25
PDB header:hydrolase
Chain: B: PDB Molecule:small vasohibin-binding protein;
PDBTitle: structural basis of tubulin detyrosination by vasohibins-svbp enzyme2 complex and functional implications
71c5eulE_
not modelled 7.3 8
PDB header:protein transport
Chain: E: PDB Molecule:preprotein translocase sece subunit;
PDBTitle: structure of the seca-secy complex with a translocating polypeptide2 substrate
72c2c2aA_
not modelled 7.3 13
PDB header:transferase
Chain: A: PDB Molecule:sensor histidine kinase;
PDBTitle: structure of the entire cytoplasmic portion of a sensor2 histidine kinase protein
73c5wdaL_
not modelled 7.2 15
PDB header:protein transport
Chain: L: PDB Molecule:general secretion pathway protein g;
PDBTitle: structure of the pulg pseudopilus
74c2ks1B_
not modelled 7.1 26
PDB header:transferase
Chain: B: PDB Molecule:epidermal growth factor receptor;
PDBTitle: heterodimeric association of transmembrane domains of erbb1 and erbb22 receptors enabling kinase activation
75c2l16A_
not modelled 7.0 46
PDB header:protein transport
Chain: A: PDB Molecule:sec-independent protein translocase protein tatad;
PDBTitle: solution structure of bacillus subtilits tatad protein in dpc micelles
76c4l0zA_
not modelled 6.8 12
PDB header:transcription/dna
Chain: A: PDB Molecule:runt-related transcription factor 1;
PDBTitle: crystal structure of runx1 and ets1 bound to tcr alpha promoter2 (crystal form 2)
77d1eaqa_
not modelled 6.8 12
Fold:Common fold of diphtheria toxin/transcription factors/cytochrome f
Superfamily:p53-like transcription factors
Family:RUNT domain
78d1mvfd_
not modelled 6.8 6
Fold:Double-split beta-barrel
Superfamily:AbrB/MazE/MraZ-like
Family:Kis/PemI addiction antidote
79c4v0bA_
not modelled 6.7 10
PDB header:hydrolase
Chain: A: PDB Molecule:atp-dependent zinc metalloprotease ftsh;
PDBTitle: escherichia coli ftsh hexameric n-domain
80c4pwuC_
not modelled 6.4 24
PDB header:signaling protein
Chain: C: PDB Molecule:modulator protein mzra;
PDBTitle: crystal structure of a modulator protein mzra (kpn_03524) from2 klebsiella pneumoniae subsp. pneumoniae mgh 78578 at 2.45 a3 resolution
81c2mxbA_
not modelled 6.3 33
PDB header:membrane protein
Chain: A: PDB Molecule:erythropoietin receptor;
PDBTitle: structure of the transmembrane domain of the mouse erythropoietin2 receptor
82c5ch4E_
not modelled 6.3 6
PDB header:protein transport
Chain: E: PDB Molecule:protein translocase subunit sece;
PDBTitle: peptide-bound state of thermus thermophilus secyeg
83c6agfB_
not modelled 6.2 11
PDB header:membrane protein
Chain: B: PDB Molecule:sodium channel subunit beta-1;
PDBTitle: structure of the human voltage-gated sodium channel nav1.4 in complex2 with beta1
84c2ddhA_
not modelled 6.2 16
PDB header:oxidoreductase
Chain: A: PDB Molecule:acyl-coa oxidase;
PDBTitle: crystal structure of acyl-coa oxidase complexed with 3-oh-dodecanoate
85c2gofA_
not modelled 6.2 38
PDB header:viral protein
Chain: A: PDB Molecule:vpu protein;
PDBTitle: three-dimensional structure of the trans-membrane domain of2 vpu from hiv-1 in aligned phospholipid bicelles
86c1pi8A_
not modelled 6.2 38
PDB header:viral protein
Chain: A: PDB Molecule:vpu protein;
PDBTitle: structure of the channel-forming trans-membrane domain of2 virus protein "u" (vpu) from hiv-1
87c1pjeA_
not modelled 6.2 38
PDB header:viral protein
Chain: A: PDB Molecule:vpu protein;
PDBTitle: structure of the channel-forming trans-membrane domain of2 virus protein "u"(vpu) from hiv-1
88c1pi7A_
not modelled 6.2 38
PDB header:viral protein
Chain: A: PDB Molecule:vpu protein;
PDBTitle: structure of the channel-forming trans-membrane domain of2 virus protein "u" (vpu) from hiv-1
89c2gohA_
not modelled 6.2 38
PDB header:viral protein
Chain: A: PDB Molecule:vpu protein;
PDBTitle: three-dimensional structure of the trans-membrane domain of2 vpu from hiv-1 in aligned phospholipid bicelles
90c5mx2R_
not modelled 6.2 27
PDB header:oxidoreductase
Chain: R: PDB Molecule:photosystem ii protein y;
PDBTitle: photosystem ii depleted of the mn4cao5 cluster at 2.55 a resolution
91c2lzsE_
not modelled 6.1 25
PDB header:protein transport
Chain: E: PDB Molecule:sec-independent protein translocase protein tata;
PDBTitle: tata oligomer
92d2hzab1
not modelled 6.1 8
Fold:Ribbon-helix-helix
Superfamily:Ribbon-helix-helix
Family:CopG-like
93c3ah9D_
not modelled 6.1 53
PDB header:structural protein
Chain: D: PDB Molecule:collagen-like peptide;
PDBTitle: crystal structure of (pro-pro-gly)9 at 1.1 a resolution
94c2mc7A_
not modelled 6.1 17
PDB header:membrane protein
Chain: A: PDB Molecule:regulatory peptide;
PDBTitle: structure of salmonella mgtr
95c1kcpA_
not modelled 6.1 44
PDB header:neurotoxin
Chain: A: PDB Molecule:kappa-conotoxin pviia;
PDBTitle: 3d structure of k-conotoxin pviia, a novel potassium channel-blocking2 toxin from cone snails, nmr, 22 structures
96d1kcpa_
not modelled 6.1 44
Fold:Knottins (small inhibitors, toxins, lectins)
Superfamily:omega toxin-like
Family:Conotoxin
97c6ocgB_
not modelled 6.1 27
PDB header:hydrolase/hydrolase inhibitor
Chain: B: PDB Molecule:small vasohibin-binding protein;
PDBTitle: crystal structure of vash1-svbp complex bound with epoy
98c5mx2r_
not modelled 6.0 24
PDB header:oxidoreductase
Chain: R: PDB Molecule:photosystem ii protein y;
PDBTitle: photosystem ii depleted of the mn4cao5 cluster at 2.55 a resolution
99c6ochD_
not modelled 5.9 27
PDB header:hydrolase/hydrolase inhibitor
Chain: D: PDB Molecule:small vasohibin-binding protein;
PDBTitle: crystal structure of vash1-svbp complex bound with parthenolide

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Transmembrane helix prediction 

Transmembrane helices have been predicted in your sequence to adopt the topology shown below