Phyre Home Retrieve Phyre Job Id
Emailmdejesus@rockefeller.edu
DescriptionRVBD0489_(gpm1)_578429_579178
DateFri Jul 26 01:50:03 BST 2019
Unique Job ID9ec909f54ecb32b8
SequenceMANTGSLVLL ... Download FASTA
Job Typenormal
Job Expiry

Summary 

Top model
Image coloured by rainbow N → C terminus
Model dimensions (Å):X:41.472 Y:39.156 Z:52.620
Model (left) based on template d1riia_
Top template information
Fold:Phosphoglycerate mutase-like
Superfamily:Phosphoglycerate mutase-like
Family:Cofactor-dependent phosphoglycerate mutase
Confidence and coverage
Confidence:100.0% Coverage: 98%
243 residues ( 98% of your sequence) have been modelled with 100.0% confidence by the single highest scoring template.
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Sequence analysis 

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Secondary structure and disorder prediction [Show] 

Domain analysis [Show] 

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#
Template Alignment Coverage3D Model Confidence
% i.d. Template Information
1d1riia_
100.0 100
Fold:Phosphoglycerate mutase-like
Superfamily:Phosphoglycerate mutase-like
Family:Cofactor-dependent phosphoglycerate mutase
2d1e58a_
100.0 48
Fold:Phosphoglycerate mutase-like
Superfamily:Phosphoglycerate mutase-like
Family:Cofactor-dependent phosphoglycerate mutase
3d2hhja1
100.0 42
Fold:Phosphoglycerate mutase-like
Superfamily:Phosphoglycerate mutase-like
Family:Cofactor-dependent phosphoglycerate mutase
4c1yjxD_
100.0 46
PDB header:isomerase, hydrolase
Chain: D: PDB Molecule:phosphoglycerate mutase 1;
PDBTitle: crystal structure of human b type phosphoglycerate mutase
5c5vveA_
100.0 49
PDB header:isomerase
Chain: A: PDB Molecule:phosphoglycerate mutase;
PDBTitle: crystal structure of phosphoglycerate mutase from naegleria fowleri
6c4eo9A_
100.0 88
PDB header:isomerase
Chain: A: PDB Molecule:2,3-bisphosphoglycerate-dependent phosphoglycerate mutase;
PDBTitle: crystal structure of a phosphoglycerate mutase gpm1 from mycobacterium2 leprae
7d1qhfa_
100.0 64
Fold:Phosphoglycerate mutase-like
Superfamily:Phosphoglycerate mutase-like
Family:Cofactor-dependent phosphoglycerate mutase
8d1xq9a_
100.0 50
Fold:Phosphoglycerate mutase-like
Superfamily:Phosphoglycerate mutase-like
Family:Cofactor-dependent phosphoglycerate mutase
9c4embD_
100.0 48
PDB header:isomerase
Chain: D: PDB Molecule:2,3-bisphosphoglycerate-dependent phosphoglycerate mutase;
PDBTitle: crystal structure of a phosphoglycerate mutase gpma from borrelia2 burgdorferi b31
10c5um0A_
100.0 48
PDB header:isomerase
Chain: A: PDB Molecule:2,3-bisphosphoglycerate-dependent phosphoglycerate mutase;
PDBTitle: crystal structure of 2,3-bisphosphoglycerate-dependent2 phosphoglycerate mutase from neisseria gonorrhoeae
11c3eznB_
100.0 57
PDB header:isomerase
Chain: B: PDB Molecule:2,3-bisphosphoglycerate-dependent phosphoglycerate mutase;
PDBTitle: crystal structure of phosphoglyceromutase from burkholderia2 pseudomallei 1710b
12c3d8hB_
100.0 46
PDB header:isomerase
Chain: B: PDB Molecule:glycolytic phosphoglycerate mutase;
PDBTitle: crystal structure of phosphoglycerate mutase from cryptosporidium2 parvum, cgd7_4270
13d3pgma_
100.0 61
Fold:Phosphoglycerate mutase-like
Superfamily:Phosphoglycerate mutase-like
Family:Cofactor-dependent phosphoglycerate mutase
14d1fzta_
100.0 44
Fold:Phosphoglycerate mutase-like
Superfamily:Phosphoglycerate mutase-like
Family:Cofactor-dependent phosphoglycerate mutase
15c2i1vB_
100.0 28
PDB header:transferase, hydrolase
Chain: B: PDB Molecule:6-phosphofructo-2-kinase/fructose-2,6-
PDBTitle: crystal structure of pfkfb3 in complex with adp and2 fructose-2,6-bisphosphate
16c1k6mA_
100.0 28
PDB header:transferase, hydrolase
Chain: A: PDB Molecule:6-phosphofructo-2-kinase/fructose-2,6-biphosphatase 2-
PDBTitle: crystal structure of human liver 6-phosphofructo-2-kinase/fructose-2,2 6-bisphosphatase
17c3ll4B_
100.0 23
PDB header:hydrolase
Chain: B: PDB Molecule:uncharacterized protein ykr043c;
PDBTitle: structure of the h13a mutant of ykr043c in complex with fructose-1,6-2 bisphosphate
18c1bifA_
100.0 25
PDB header:bifunctional enzyme
Chain: A: PDB Molecule:6-phosphofructo-2-kinase/ fructose-2,6-bisphosphatase;
PDBTitle: 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase bifunctional2 enzyme complexed with atp-g-s and phosphate
19c3f3kA_
100.0 23
PDB header:structural genomics, unknown function
Chain: A: PDB Molecule:uncharacterized protein ykr043c;
PDBTitle: the structure of uncharacterized protein ykr043c from saccharomyces2 cerevisiae.
20d1bifa2
100.0 26
Fold:Phosphoglycerate mutase-like
Superfamily:Phosphoglycerate mutase-like
Family:6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase, phosphatase domain
21d1k6ma2
not modelled 100.0 28
Fold:Phosphoglycerate mutase-like
Superfamily:Phosphoglycerate mutase-like
Family:6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase, phosphatase domain
22c3r7aA_
not modelled 100.0 22
PDB header:transferase
Chain: A: PDB Molecule:phosphoglycerate mutase, putative;
PDBTitle: crystal structure of phosphoglycerate mutase from bacillus anthracis2 str. sterne
23c3dcyA_
not modelled 100.0 27
PDB header:apoptosis regulator
Chain: A: PDB Molecule:regulator protein;
PDBTitle: crystal structure a tp53-induced glycolysis and apoptosis regulator2 protein from homo sapiens.
24c4ij5B_
not modelled 100.0 23
PDB header:hydrolase
Chain: B: PDB Molecule:phosphoserine phosphatase 1;
PDBTitle: crystal structure of a novel-type phosphoserine phosphatase from2 hydrogenobacter thermophilus tk-6
25c2a6pA_
not modelled 100.0 28
PDB header:structural genomics, unknown function
Chain: A: PDB Molecule:possible phosphoglycerate mutase gpm2;
PDBTitle: structure solution to 2.2 angstrom and functional characterisation of2 the open reading frame rv3214 from mycobacterium tuberculosis
26c6e4bC_
not modelled 100.0 22
PDB header:hydrolase
Chain: C: PDB Molecule:adenosylcobalamin/alpha-ribazole phosphatase;
PDBTitle: the crystal structure of a putative alpha-ribazole-5'-p phosphatase2 from escherichia coli str. k-12 substr. mg1655
27c2ikqA_
not modelled 100.0 21
PDB header:signaling protein, immune system
Chain: A: PDB Molecule:suppressor of t-cell receptor signaling 1;
PDBTitle: crystal structure of mouse sts-1 pgm domain in complex with phosphate
28c4pz9B_
not modelled 100.0 29
PDB header:hydrolase
Chain: B: PDB Molecule:glucosyl-3-phosphoglycerate phosphatase;
PDBTitle: the native structure of mycobacterial glucosyl-3-phosphoglycerate2 phosphatase rv2419c
29c3d4iD_
not modelled 100.0 19
PDB header:hydrolase
Chain: D: PDB Molecule:sts-2 protein;
PDBTitle: crystal structure of the 2h-phosphatase domain of sts-2
30c2yn0A_
not modelled 100.0 18
PDB header:transcription
Chain: A: PDB Molecule:transcription factor tau 55 kda subunit;
PDBTitle: tau55 histidine phosphatase domain
31c5zkkA_
not modelled 100.0 24
PDB header:hydrolase
Chain: A: PDB Molecule:phosphoglycerate mutase family protein, putative;
PDBTitle: crystal structure of phosphoserine phosphatase from entamoeba2 histolytica
32d1h2ea_
not modelled 100.0 29
Fold:Phosphoglycerate mutase-like
Superfamily:Phosphoglycerate mutase-like
Family:Cofactor-dependent phosphoglycerate mutase
33c2yn2A_
not modelled 100.0 21
PDB header:hydrolase
Chain: A: PDB Molecule:uncharacterized protein ynl108c;
PDBTitle: huf protein - paralogue of the tau55 histidine phosphatase domain
34d1tipa_
not modelled 100.0 28
Fold:Phosphoglycerate mutase-like
Superfamily:Phosphoglycerate mutase-like
Family:6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase, phosphatase domain
35c3e9eB_
not modelled 100.0 27
PDB header:hydrolase
Chain: B: PDB Molecule:zgc:56074;
PDBTitle: structure of full-length h11a mutant form of tigar from danio rerio
36c3c7tB_
not modelled 100.0 22
PDB header:hydrolase
Chain: B: PDB Molecule:ecdysteroid-phosphate phosphatase;
PDBTitle: crystal structure of the ecdysone phosphate phosphatase, eppase, from2 bombix mori in complex with tungstate
37c3hjgB_
not modelled 100.0 19
PDB header:hydrolase
Chain: B: PDB Molecule:putative alpha-ribazole-5'-phosphate phosphatase cobc;
PDBTitle: crystal structure of putative alpha-ribazole-5'-phosphate phosphatase2 cobc from vibrio parahaemolyticus
38c2qniA_
not modelled 100.0 17
PDB header:structural genomics, unknown function
Chain: A: PDB Molecule:uncharacterized protein atu0299;
PDBTitle: crystal structure of uncharacterized protein atu0299
39c3mxoB_
not modelled 100.0 19
PDB header:hydrolase
Chain: B: PDB Molecule:serine/threonine-protein phosphatase pgam5, mitochondrial;
PDBTitle: crystal structure oh human phosphoglycerate mutase family member 52 (pgam5)
40d1v37a_
not modelled 100.0 35
Fold:Phosphoglycerate mutase-like
Superfamily:Phosphoglycerate mutase-like
Family:Cofactor-dependent phosphoglycerate mutase
41c3eozB_
not modelled 100.0 22
PDB header:isomerase
Chain: B: PDB Molecule:putative phosphoglycerate mutase;
PDBTitle: crystal structure of phosphoglycerate mutase from plasmodium2 falciparum, pfd0660w
42c1ujcA_
not modelled 100.0 21
PDB header:hydrolase
Chain: A: PDB Molecule:phosphohistidine phosphatase sixa;
PDBTitle: structure of the protein histidine phosphatase sixa2 complexed with tungstate
43c2rflB_
not modelled 100.0 23
PDB header:hydrolase, isomerase
Chain: B: PDB Molecule:putative phosphohistidine phosphatase sixa;
PDBTitle: crystal structure of the putative phosphohistidine phosphatase sixa2 from agrobacterium tumefaciens
44c3f2iD_
not modelled 99.9 26
PDB header:structural genomics, unknown function
Chain: D: PDB Molecule:alr0221 protein;
PDBTitle: crystal structure of the alr0221 protein from nostoc, northeast2 structural genomics consortium target nsr422.
45c5gg7A_
not modelled 99.9 14
PDB header:hydrolase
Chain: A: PDB Molecule:hydrolase, nudix family protein;
PDBTitle: crystal structure of mycobacterium smegmatis mutt1 in complex with 8-2 oxo-dgtp, 8-oxo-dgmp and pyrophosphate (i)
46c4hbzA_
not modelled 99.9 25
PDB header:hydrolase, isomerase
Chain: A: PDB Molecule:putative phosphohistidine phosphatase, sixa;
PDBTitle: the structure of putative phosphohistidine phosphatase sixa from2 nakamurella multipartitia.
47c3fjyB_
not modelled 99.9 25
PDB header:hydrolase
Chain: B: PDB Molecule:probable mutt1 protein;
PDBTitle: crystal structure of a probable mutt1 protein from bifidobacterium2 adolescentis
48c2glcA_
not modelled 98.6 16
PDB header:hydrolase
Chain: A: PDB Molecule:histidine acid phosphatase;
PDBTitle: structure of francisella tularensis histidine acid phosphatase bound2 to orthovanadate
49d1nd6a_
not modelled 98.5 16
Fold:Phosphoglycerate mutase-like
Superfamily:Phosphoglycerate mutase-like
Family:Histidine acid phosphatase
50c5cdhE_
not modelled 98.3 15
PDB header:hydrolase/hydrolase inhibitor
Chain: E: PDB Molecule:major acid phosphatase;
PDBTitle: structure of legionella pneumophila histidine acid phosphatase2 complexed with l(+)-tartrate
51c4jodA_
not modelled 98.3 20
PDB header:hydrolase
Chain: A: PDB Molecule:lysophosphatidic acid phosphatase type 6;
PDBTitle: crystal structure of human lysophosphatidic acid phosphatase type 62 complexed with tris
52d1rpaa_
not modelled 98.0 22
Fold:Phosphoglycerate mutase-like
Superfamily:Phosphoglycerate mutase-like
Family:Histidine acid phosphatase
53c2wniC_
not modelled 97.7 26
PDB header:hydrolase
Chain: C: PDB Molecule:3-phytase;
PDBTitle: crystal structure analysis of klebsiella sp asr1 phytase
54c3zhcB_
not modelled 97.6 17
PDB header:hydrolase
Chain: B: PDB Molecule:phytase;
PDBTitle: structure of the phytase from citrobacter braakii at 2.3 angstrom2 resolution.
55c4arvB_
not modelled 97.6 20
PDB header:hydrolase
Chain: B: PDB Molecule:phytase;
PDBTitle: yersinia kristensenii phytase apo form
56d1qwoa_
not modelled 97.6 20
Fold:Phosphoglycerate mutase-like
Superfamily:Phosphoglycerate mutase-like
Family:Histidine acid phosphatase
57d1dkla_
not modelled 97.6 14
Fold:Phosphoglycerate mutase-like
Superfamily:Phosphoglycerate mutase-like
Family:Histidine acid phosphatase
58d1ihpa_
not modelled 97.6 24
Fold:Phosphoglycerate mutase-like
Superfamily:Phosphoglycerate mutase-like
Family:Histidine acid phosphatase
59d1qfxa_
not modelled 97.5 22
Fold:Phosphoglycerate mutase-like
Superfamily:Phosphoglycerate mutase-like
Family:Histidine acid phosphatase
60c4aruA_
not modelled 97.5 17
PDB header:hydrolase
Chain: A: PDB Molecule:histidine acid phosphatase;
PDBTitle: hafnia alvei phytase in complex with tartrate
61d1nt4a_
not modelled 97.5 25
Fold:Phosphoglycerate mutase-like
Superfamily:Phosphoglycerate mutase-like
Family:Histidine acid phosphatase
62c2gfiB_
not modelled 97.4 12
PDB header:hydrolase
Chain: B: PDB Molecule:phytase;
PDBTitle: crystal structure of the phytase from d. castellii at 2.3 a
63c4fdtB_
not modelled 96.7 13
PDB header:hydrolase
Chain: B: PDB Molecule:putative multiple inositol polyphosphate histidine
PDBTitle: crystal structure of a multiple inositol polyphosphate phosphatase
64c5oltA_
not modelled 29.3 30
PDB header:transferase
Chain: A: PDB Molecule:cellulose biosynthesis protein bcsg;
PDBTitle: crystal structure of the extramembrane domain of the cellulose2 biosynthetic protein bcsg from salmonella typhimurium
65c2olkD_
not modelled 29.3 18
PDB header:hydrolase
Chain: D: PDB Molecule:amino acid abc transporter;
PDBTitle: abc protein artp in complex with adp-beta-s
66c4hluC_
not modelled 27.9 18
PDB header:hydrolase
Chain: C: PDB Molecule:energy-coupling factor transporter atp-binding protein
PDBTitle: structure of the ecfa-a' heterodimer bound to adp
67c3zqjC_
not modelled 26.9 18
PDB header:dna binding protein
Chain: C: PDB Molecule:uvrabc system protein a;
PDBTitle: mycobacterium tuberculosis uvra
68c4rkkA_
not modelled 25.7 12
PDB header:hydrolase
Chain: A: PDB Molecule:laforin;
PDBTitle: structure of a product bound phosphatase
69c5x40A_
not modelled 24.2 15
PDB header:transport protein
Chain: A: PDB Molecule:cobalt abc transporter atp-binding protein;
PDBTitle: structure of a cbio dimer bound with amppcp
70c5d3mF_
not modelled 23.4 21
PDB header:transport protein
Chain: F: PDB Molecule:energy-coupling factor transporter atp-binding protein
PDBTitle: folate ecf transporter: amppnp bound state
71c3uueA_
not modelled 23.3 14
PDB header:hydrolase
Chain: A: PDB Molecule:lip1, secretory lipase (family 3);
PDBTitle: crystal structure of mono- and diacylglycerol lipase from malassezia2 globosa
72c5gw8A_
not modelled 22.9 14
PDB header:hydrolase
Chain: A: PDB Molecule:hypothetical secretory lipase (family 3);
PDBTitle: crystal structure of a putative dag-like lipase (mgmdl2) from2 malassezia globosa
73c4d7aA_
not modelled 22.7 9
PDB header:ligase
Chain: A: PDB Molecule:trna threonylcarbamoyladenosine dehydratase;
PDBTitle: crystal structure of e. coli trna n6-threonylcarbamoyladenosine2 dehydratase, tcda, in complex with amp at 1.801 angstroem3 resolution
74d1ji0a_
not modelled 22.0 21
Fold:P-loop containing nucleoside triphosphate hydrolases
Superfamily:P-loop containing nucleoside triphosphate hydrolases
Family:ABC transporter ATPase domain-like
75c2yz2B_
not modelled 21.9 21
PDB header:hydrolase
Chain: B: PDB Molecule:putative abc transporter atp-binding protein tm_0222;
PDBTitle: crystal structure of the abc transporter in the cobalt transport2 system
76c3j16B_
not modelled 21.3 21
PDB header:ribosome
Chain: B: PDB Molecule:rli1p;
PDBTitle: models of ribosome-bound dom34p and rli1p and their ribosomal binding2 partners
77c5x7kB_
not modelled 21.2 18
PDB header:transport protein
Chain: B: PDB Molecule:lipase b;
PDBTitle: crystal structure of the nucleotide-binding domain (nbd) of lipb, a2 abc transporter subunit of a type i secretion system
78c2d2fA_
not modelled 20.8 12
PDB header:protein binding
Chain: A: PDB Molecule:sufc protein;
PDBTitle: crystal structure of atypical cytoplasmic abc-atpase sufc from thermus2 thermophilus hb8
79c3pihA_
not modelled 20.8 21
PDB header:hydrolase/dna
Chain: A: PDB Molecule:uvrabc system protein a;
PDBTitle: t. maritima uvra in complex with fluorescein-modified dna
80d1vpla_
not modelled 20.8 15
Fold:P-loop containing nucleoside triphosphate hydrolases
Superfamily:P-loop containing nucleoside triphosphate hydrolases
Family:ABC transporter ATPase domain-like
81c2pcjB_
not modelled 20.7 15
PDB header:hydrolase
Chain: B: PDB Molecule:lipoprotein-releasing system atp-binding protein lold;
PDBTitle: crystal structure of abc transporter (aq_297) from aquifex aeolicus2 vf5
82c5xu1A_
not modelled 20.6 21
PDB header:transport protein
Chain: A: PDB Molecule:abc transporter atp-binding protein;
PDBTitle: structure of a non-canonical abc transporter from streptococcus2 pneumoniae r6
83c3bk7A_
not modelled 20.4 30
PDB header:hydrolyase/translation
Chain: A: PDB Molecule:abc transporter atp-binding protein;
PDBTitle: structure of the complete abce1/rnaase-l inhibitor protein from2 pyrococcus abysii
84c1yqtA_
not modelled 20.1 29
PDB header:hydrolyase/translation
Chain: A: PDB Molecule:rnase l inhibitor;
PDBTitle: rnase-l inhibitor
85c4rvcA_
not modelled 19.9 12
PDB header:transport protein
Chain: A: PDB Molecule:abc transporter atp-binding protein;
PDBTitle: structure of atp binding subunit of abc transporter
86c4p31B_
not modelled 19.7 27
PDB header:hydrolase
Chain: B: PDB Molecule:lipopolysaccharide export system atp-binding protein lptb;
PDBTitle: crystal structure of a selenomethionine derivative of e. coli lptb in2 complex with adp-magensium
87c6dc6A_
not modelled 19.6 17
PDB header:signaling protein/ligase
Chain: A: PDB Molecule:ubiquitin-like modifier-activating enzyme 1;
PDBTitle: crystal structure of human ubiquitin activating enzyme e1 (uba1) in2 complex with ubiquitin
88d1b0ua_
not modelled 19.5 18
Fold:P-loop containing nucleoside triphosphate hydrolases
Superfamily:P-loop containing nucleoside triphosphate hydrolases
Family:ABC transporter ATPase domain-like
89c1f2uD_
not modelled 18.8 15
PDB header:replication
Chain: D: PDB Molecule:rad50 abc-atpase;
PDBTitle: crystal structure of rad50 abc-atpase
90c3ux8A_
not modelled 18.6 28
PDB header:dna binding protein
Chain: A: PDB Molecule:excinuclease abc, a subunit;
PDBTitle: crystal structure of uvra
91d1tiaa_
not modelled 17.8 14
Fold:alpha/beta-Hydrolases
Superfamily:alpha/beta-Hydrolases
Family:Fungal lipases
92d1vjea_
not modelled 17.7 14
Fold:LuxS/MPP-like metallohydrolase
Superfamily:LuxS/MPP-like metallohydrolase
Family:Autoinducer-2 production protein LuxS
93c5xk2A_
not modelled 17.4 14
PDB header:hydrolase
Chain: A: PDB Molecule:diacylglycerol lipase;
PDBTitle: crystal structure of mono- and diacylglycerol lipase from aspergillus2 oryzae
94c5e68A_
not modelled 16.9 19
PDB header:lyase
Chain: A: PDB Molecule:s-ribosylhomocysteine lyase;
PDBTitle: high resolution crystal structure of luxs - quorum sensor molecular2 complex from salmonella typhi at 1.58 angstroms
95c3dhwC_
not modelled 16.6 18
PDB header:membrane protein/hydrolase
Chain: C: PDB Molecule:methionine import atp-binding protein metn;
PDBTitle: crystal structure of methionine importer metni
96c5ws4A_
not modelled 16.4 15
PDB header:membrane protein
Chain: A: PDB Molecule:macrolide export atp-binding/permease protein macb;
PDBTitle: crystal structure of tripartite-type abc transporter macb from2 acinetobacter baumannii
97d1p9oa_
not modelled 16.1 18
Fold:Ribokinase-like
Superfamily:CoaB-like
Family:CoaB-like
98c3nzeB_
not modelled 15.9 17
PDB header:transcription regulator
Chain: B: PDB Molecule:putative transcriptional regulator, sugar-binding family;
PDBTitle: the crystal structure of a domain of a possible sugar-binding2 transcriptional regulator from arthrobacter aurescens tc1.
99d1m3ga_
not modelled 15.7 13
Fold:(Phosphotyrosine protein) phosphatases II
Superfamily:(Phosphotyrosine protein) phosphatases II
Family:Dual specificity phosphatase-like

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Transmembrane helix prediction 

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