Phyre Home Retrieve Phyre Job Id
Emailmdejesus@rockefeller.edu
DescriptionRVBD0492A_(-)_583378_583707
DateFri Jul 26 01:50:03 BST 2019
Unique Job ID825f2337fc3108fb
SequenceMSFLLDPPLL ... Download FASTA
Job Typenormal
Job Expiry

Summary 

Top model
Image coloured by rainbow N → C terminus
Model dimensions (Å):X:23.503 Y:21.368 Z:19.227
Model (left) based on template c2xg8D_
Top template information
PDB header:transcription
Chain: D: PDB Molecule:pipx;
PDBTitle: structural basis of gene regulation by protein pii: the2 crystal complex of pii and pipx from synechococcus3 elongatus pcc 7942
Confidence and coverage
Confidence: 46.7% Coverage: 19%
21 residues ( 19% of your sequence) have been modelled with 46.7% confidence by the single highest scoring template.
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Sequence analysis 

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Secondary structure and disorder prediction [Show] 

Domain analysis [Show] 

Detailed template information [Hide] 

 

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Template Alignment Coverage3D Model Confidence
% i.d. Template Information
1c2xg8D_



46.7 24
PDB header:transcription
Chain: D: PDB Molecule:pipx;
PDBTitle: structural basis of gene regulation by protein pii: the2 crystal complex of pii and pipx from synechococcus3 elongatus pcc 7942
2c3n5bB_



43.7 33
PDB header:transcription regulator
Chain: B: PDB Molecule:asr0485 protein;
PDBTitle: the complex of pii and pipx from anabaena
3d1y0ba1



13.4 27
Fold:PRTase-like
Superfamily:PRTase-like
Family:Phosphoribosyltransferases (PRTases)
4c2n5qA_



13.1 50
PDB header:unknown function
Chain: A: PDB Molecule:cysteine-rich peptide js1;
PDBTitle: solution structure of cystein-rich peptide js1 from jasminum sambac
5c6az5A_



12.9 57
PDB header:sugar binding protein
Chain: A: PDB Molecule:alpha-amylase;
PDBTitle: crystal structure of cbmd (family cbm41) from eubacterium rectale2 amy13k
6c2x5sB_



11.8 67
PDB header:transferase
Chain: B: PDB Molecule:mannose-1-phosphate guanylyltransferase;
PDBTitle: crystal structure of t. maritima gdp-mannose2 pyrophosphorylase in apo state.
7c1izlL_



10.9 29
PDB header:photosynthesis
Chain: L: PDB Molecule:photosystem ii: subunit psbb;
PDBTitle: crystal structure of photosystem ii
8d1k1xa1



10.8 23
Fold:immunoglobulin/albumin-binding domain-like
Superfamily:Families 57/38 glycoside transferase middle domain
Family:4-alpha-glucanotransferase, domain 2
9d2i00a1



8.8 29
Fold:SCP-like
Superfamily:SCP-like
Family:EF1021 C-terminal domain-like
10c1izlB_



8.8 29
PDB header:photosynthesis
Chain: B: PDB Molecule:photosystem ii: subunit psbb;
PDBTitle: crystal structure of photosystem ii
11c5vocB_



8.5 25
PDB header:viral protein/immune system
Chain: B: PDB Molecule:envelope glycoprotein l;
PDBTitle: crystal structure of hcmv pentamer in complex with neutralizing2 antibody 8i21 - low resolution dataset for initial phasing by sad
12d2ozga1



8.2 45
Fold:SCP-like
Superfamily:SCP-like
Family:EF1021 C-terminal domain-like
13c2wj9A_



8.1 15
PDB header:hydrolase inhibitor
Chain: A: PDB Molecule:intergenic-region protein;
PDBTitle: ardb
14c5lcsA_



8.1 40
PDB header:immune system
Chain: A: PDB Molecule:gallinacin-7;
PDBTitle: nmr structure of chicken avbd7 defensin
15c2mwdA_



7.9 19
PDB header:transcription
Chain: A: PDB Molecule:transcription elongation regulator 1;
PDBTitle: nmr structure of fbp28 ww2 mutant y438r dndc
16d1vcha1



7.8 12
Fold:PRTase-like
Superfamily:PRTase-like
Family:Phosphoribosyltransferases (PRTases)
17c4lu0A_



7.7 10
PDB header:transferase
Chain: A: PDB Molecule:2-dehydro-3-deoxyphosphooctonate aldolase;
PDBTitle: crystal structure of 2-keto-3-deoxy-d-manno-octulosonate-8-phosphate2 synthase from pseudomonas aeruginosa.
18c4ewcA_



7.3 86
PDB header:rna binding protein
Chain: A: PDB Molecule:putative nucleoprotein;
PDBTitle: crystal structure of the infectious salmon anemia virus nucleoprotein
19c3h6qA_



7.2 25
PDB header:hydrolase/hydrolase inhibitor
Chain: A: PDB Molecule:macrocypin 1a;
PDBTitle: macrocypin, a beta-trefoil cysteine protease inhibitor
20d1rzhh2



7.0 50
Fold:Single transmembrane helix
Superfamily:Photosystem II reaction centre subunit H, transmembrane region
Family:Photosystem II reaction centre subunit H, transmembrane region
21d1o60a_



not modelled 6.9 14
Fold:TIM beta/alpha-barrel
Superfamily:Aldolase
Family:Class I DAHP synthetase
22c1zr7A_



not modelled 6.8 25
PDB header:signaling protein
Chain: A: PDB Molecule:huntingtin-interacting protein hypa/fbp11;
PDBTitle: solution structure of the first ww domain of fbp11
23c4ng2E_



not modelled 6.7 21
PDB header:transcription regulator
Chain: E: PDB Molecule:uncharacterized protein;
PDBTitle: crystal structure of lasr lbd-qsla complex from pseudomonas aeruginosa
24c4z1bA_



not modelled 6.5 14
PDB header:transferase
Chain: A: PDB Molecule:2-dehydro-3-deoxyphosphooctonate aldolase;
PDBTitle: structure of h204a mutant kdo8ps from h.pylori
25c1zcoA_



not modelled 6.4 14
PDB header:lyase
Chain: A: PDB Molecule:2-dehydro-3-deoxyphosphoheptonate aldolase;
PDBTitle: crystal structure of pyrococcus furiosus 3-deoxy-d-arabino-2 heptulosonate 7-phosphate synthase
26d1l9bh2



not modelled 6.3 50
Fold:Single transmembrane helix
Superfamily:Photosystem II reaction centre subunit H, transmembrane region
Family:Photosystem II reaction centre subunit H, transmembrane region
27c6h8qH_



not modelled 6.2 67
PDB header:cell cycle
Chain: H: PDB Molecule:sister chromatid cohesion protein 1;
PDBTitle: structural basis for scc3-dependent cohesin recruitment to chromatin
28c1izlC_



not modelled 6.2 26
PDB header:photosynthesis
Chain: C: PDB Molecule:photosystem ii: subunit psbc;
PDBTitle: crystal structure of photosystem ii
29d1qbjc_



not modelled 6.0 25
Fold:DNA/RNA-binding 3-helical bundle
Superfamily:"Winged helix" DNA-binding domain
Family:Z-DNA binding domain
30d2hv2a1



not modelled 6.0 21
Fold:SCP-like
Superfamily:SCP-like
Family:EF1021 C-terminal domain-like
31c6eznE_



not modelled 5.8 55
PDB header:membrane protein
Chain: E: PDB Molecule:dolichyl-diphosphooligosaccharide--protein
PDBTitle: cryo-em structure of the yeast oligosaccharyltransferase (ost) complex
32c6dnsA_



not modelled 5.5 60
PDB header:hydrolase
Chain: A: PDB Molecule:alpha-1,4-endofucoidanase;
PDBTitle: endo-fucoidan hydrolase mffcna9 from glycoside hydrolase family 107
33c2axtc_



not modelled 5.5 26
PDB header:electron transport
Chain: C: PDB Molecule:photosystem ii cp43 protein;
PDBTitle: crystal structure of photosystem ii from thermosynechococcus elongatus
34d2axtc1



not modelled 5.5 26
Fold:Photosystem II antenna protein-like
Superfamily:Photosystem II antenna protein-like
Family:Photosystem II antenna protein-like
35d1d9ea_



not modelled 5.4 21
Fold:TIM beta/alpha-barrel
Superfamily:Aldolase
Family:Class I DAHP synthetase
36d2rm0w1



not modelled 5.4 19
Fold:WW domain-like
Superfamily:WW domain
Family:WW domain
37c6cxhC_



not modelled 5.3 33
PDB header:oxidoreductase
Chain: C: PDB Molecule:particulate methane monooxygenase, c subunit;
PDBTitle: crystal structure of particulate methane monooxygenase from2 methylomicrobium alcaliphilum 20z
38c6hb2B_



not modelled 5.3 17
PDB header:chaperone
Chain: B: PDB Molecule:protein hgh1;
PDBTitle: structure of hgh1, crystal form i, selenomethionine derivative
39c2mweA_



not modelled 5.2 19
PDB header:transcription
Chain: A: PDB Molecule:transcription elongation regulator 1;
PDBTitle: nmr structure of fbp28 ww2 mutant y438r, l453a dndc
40c3fs2A_



not modelled 5.2 36
PDB header:transferase
Chain: A: PDB Molecule:2-dehydro-3-deoxyphosphooctonate aldolase;
PDBTitle: crystal structure of 2-dehydro-3-deoxyphosphooctonate aldolase from2 bruciella melitensis at 1.85a resolution

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