Phyre Home Retrieve Phyre Job Id
Emailmdejesus@rockefeller.edu
DescriptionRVBD0495c_(-)_585427_586317
DateFri Jul 26 01:50:04 BST 2019
Unique Job ID283e2405f390b9f2
SequenceVWRPAQGARW ... Download FASTA
Job Typenormal
Job Expiry

Summary 

Top model
Image coloured by rainbow N → C terminus
Model dimensions (Å):X:29.674 Y:24.655 Z:20.956
Model (left) based on template c6chgC_
Top template information
PDB header:transferase
Chain: C: PDB Molecule:histone-lysine n-methyltransferase, h3 lysine-4 specific;
PDBTitle: crystal structure of the yeast compass catalytic module
Confidence and coverage
Confidence: 51.4% Coverage: 9%
26 residues ( 9% of your sequence) have been modelled with 51.4% confidence by the single highest scoring template.
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Sequence analysis 

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Secondary structure and disorder prediction [Show] 

Domain analysis [Show] 

Detailed template information [Hide] 

 

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Template Alignment Coverage3D Model Confidence
% i.d. Template Information
1c6chgC_
51.4 35
PDB header:transferase
Chain: C: PDB Molecule:histone-lysine n-methyltransferase, h3 lysine-4 specific;
PDBTitle: crystal structure of the yeast compass catalytic module
2c5uz9B_
40.8 30
PDB header:immune system/rna
Chain: B: PDB Molecule:crispr-associated protein csy2;
PDBTitle: cryo em structure of anti-crisprs, acrf1 and acrf2, bound to type i-f2 crrna-guided crispr surveillance complex
3c4rg6S_
33.7 37
PDB header:protein binding
Chain: S: PDB Molecule:anaphase-promoting complex subunit 16;
PDBTitle: crystal structure of apc3-apc16 complex
4c4rg9S_
33.4 37
PDB header:protein binding
Chain: S: PDB Molecule:anaphase-promoting complex subunit 16;
PDBTitle: crystal structure of apc3-apc16 complex (selenomethionine derivative)
5c4ui9E_
29.5 37
PDB header:cell cycle
Chain: E: PDB Molecule:anaphase-promoting complex subunit 16;
PDBTitle: atomic structure of the human anaphase-promoting complex
6c4whnB_
25.7 33
PDB header:transferase
Chain: B: PDB Molecule:apxc;
PDBTitle: structure of toxin-activating acyltransferase (taat)
7c5iiaH_
21.6 21
PDB header:cell adhesion
Chain: H: PDB Molecule:vitelline envelope sperm lysin receptor;
PDBTitle: crystal structure of red abalone egg verl repeat 3 in complex with2 sperm lysin at 1.7 a resolution (crystal form i)
8d1uyra2
19.2 45
Fold:ClpP/crotonase
Superfamily:ClpP/crotonase
Family:Biotin dependent carboxylase carboxyltransferase domain
9c6agoA_
18.2 22
PDB header:transferase/gene regulation
Chain: A: PDB Molecule:histone-lysine n-methyltransferase ash1l;
PDBTitle: crystal structure of mrg15-ash1l histone methyltransferase complex
10d2fbea1
17.0 23
Fold:Concanavalin A-like lectins/glucanases
Superfamily:Concanavalin A-like lectins/glucanases
Family:SPRY domain
11c4n7uA_
16.4 23
PDB header:signaling protein
Chain: A: PDB Molecule:butyrophilin subfamily 3 member a1;
PDBTitle: crystal structure of intracellular b30.2 domain of btn3a1 in complex2 with chdmapp
12c4cg4D_
15.7 18
PDB header:actin-binding protein
Chain: D: PDB Molecule:pyrin;
PDBTitle: crystal structure of the chs-b30.2 domains of trim20
13c3opeA_
15.1 31
PDB header:transferase
Chain: A: PDB Molecule:probable histone-lysine n-methyltransferase ash1l;
PDBTitle: structural basis of auto-inhibitory mechanism of histone2 methyltransferase
14c3uv0B_
14.9 19
PDB header:protein binding
Chain: B: PDB Molecule:mutator 2, isoform b;
PDBTitle: crystal structure of the drosophila mu2 fha domain
15c4z4pA_
14.8 28
PDB header:transferase
Chain: A: PDB Molecule:histone-lysine n-methyltransferase 2d;
PDBTitle: structure of the mll4 set domain
16d1rj9b1
14.4 17
Fold:Four-helical up-and-down bundle
Superfamily:Domain of the SRP/SRP receptor G-proteins
Family:Domain of the SRP/SRP receptor G-proteins
17c2l7sA_
14.2 50
PDB header:hormone
Chain: A: PDB Molecule:adrenomedullin;
PDBTitle: determination of the three-dimensional structure of adrenomedullin, a2 first step towards the analysis of its interactions with receptors3 and small molecules
18c1uzgA_
13.9 60
PDB header:viral protein
Chain: A: PDB Molecule:major envelope protein e;
PDBTitle: crystal structure of the dengue type 3 virus envelope2 protein
19c5cskB_
12.9 55
PDB header:ligase
Chain: B: PDB Molecule:acetyl-coa carboxylase;
PDBTitle: crystal structure of yeast acetyl-coa carboxylase, unbiotinylated
20c3dalA_
12.9 23
PDB header:transferase
Chain: A: PDB Molecule:pr domain zinc finger protein 1;
PDBTitle: methyltransferase domain of human pr domain-containing protein 1
21c5gkeB_
not modelled 12.8 40
PDB header:hydrolase/dna
Chain: B: PDB Molecule:endonuclease endoms;
PDBTitle: structure of endoms-dsdna1 complex
22c2of6C_
not modelled 12.5 50
PDB header:virus
Chain: C: PDB Molecule:envelope glycoprotein e;
PDBTitle: structure of immature west nile virus
23c6g2dC_
not modelled 12.3 55
PDB header:ligase
Chain: C: PDB Molecule:acetyl-coa carboxylase 1;
PDBTitle: citrate-induced acetyl-coa carboxylase (acc-cit) filament at 5.4 a2 resolution
24c6epkA_
not modelled 11.9 60
PDB header:viral protein
Chain: A: PDB Molecule:envelope protein e;
PDBTitle: crystal structure of the precursor membrane protein-envelope protein2 heterodimer from the yellow fever virus
25c4jdxB_
not modelled 11.9 33
PDB header:protein binding
Chain: B: PDB Molecule:slr1964 protein;
PDBTitle: structure of the fluorescence recovery protein from synechocystis sp2 pcc 6803
26c5cslA_
not modelled 11.9 55
PDB header:ligase
Chain: A: PDB Molecule:acetyl-coa carboxylase;
PDBTitle: crystal structure of the 500 kd yeast acetyl-coa carboxylase2 holoenzyme dimer
27c2wl1A_
not modelled 11.9 18
PDB header:signaling protein
Chain: A: PDB Molecule:pyrin;
PDBTitle: pyrin pryspry domain
28c3ff6D_
not modelled 11.8 64
PDB header:ligase
Chain: D: PDB Molecule:acetyl-coa carboxylase 2;
PDBTitle: human acc2 ct domain with cp-640186
29c2w5zA_
not modelled 11.4 28
PDB header:transferase
Chain: A: PDB Molecule:histone-lysine n-methyltransferase hrx;
PDBTitle: ternary complex of the mixed lineage leukaemia (mll1) set2 domain with the cofactor product s-adenosylhomocysteine3 and histone peptide.
30d1ok8a2
not modelled 11.2 50
Fold:Viral glycoprotein, central and dimerisation domains
Superfamily:Viral glycoprotein, central and dimerisation domains
Family:Viral glycoprotein, central and dimerisation domains
31c3mqiA_
not modelled 10.9 8
PDB header:transcription activator
Chain: A: PDB Molecule:transcription factor coe1;
PDBTitle: human early b-cell factor 1 (ebf1) ipt/tig domain
32d1svba2
not modelled 10.4 40
Fold:Viral glycoprotein, central and dimerisation domains
Superfamily:Viral glycoprotein, central and dimerisation domains
Family:Viral glycoprotein, central and dimerisation domains
33c1od4C_
not modelled 10.4 50
PDB header:ligase
Chain: C: PDB Molecule:acetyl-coenzyme a carboxylase;
PDBTitle: acetyl-coa carboxylase carboxyltransferase domain
34c1p58C_
not modelled 10.3 50
PDB header:virus
Chain: C: PDB Molecule:major envelope protein e;
PDBTitle: complex organization of dengue virus membrane proteins as revealed by2 9.5 angstrom cryo-em reconstruction
35c5wsnC_
not modelled 10.2 50
PDB header:virus
Chain: C: PDB Molecule:e protein;
PDBTitle: structure of japanese encephalitis virus
36c4b03A_
not modelled 10.2 50
PDB header:virus
Chain: A: PDB Molecule:dengue virus 1 e protein;
PDBTitle: 6a electron cryomicroscopy structure of immature dengue virus serotype2 1
37c3uajA_
not modelled 10.2 50
PDB header:viral protein/immune system
Chain: A: PDB Molecule:envelope protein;
PDBTitle: crystal structure of the envelope glycoprotein ectodomain from dengue2 virus serotype 4 in complex with the fab fragment of the chimpanzee3 monoclonal antibody 5h2
38c4qeoA_
not modelled 10.1 29
PDB header:transcription/dna
Chain: A: PDB Molecule:histone-lysine n-methyltransferase, h3 lysine-9 specific
PDBTitle: crystal structure of kryptonite in complex with mchh dna, h3(1-15)2 peptide and sah
39c4xb6D_
not modelled 9.9 71
PDB header:transferase
Chain: D: PDB Molecule:alpha-d-ribose 1-methylphosphonate 5-phosphate c-p lyase;
PDBTitle: structure of the e. coli c-p lyase core complex
40c5o6vC_
not modelled 9.8 40
PDB header:virus
Chain: C: PDB Molecule:envelope protein;
PDBTitle: the cryo-em structure of tick-borne encephalitis virus complexed with2 fab fragment of neutralizing antibody 19/1786
41c5i6hA_
not modelled 9.6 50
PDB header:ligase
Chain: A: PDB Molecule:acetyl-coa carboxylase-like protein;
PDBTitle: crystal structure of cd-ct domains of chaetomium thermophilum acetyl-2 coa carboxylase
42c5ujgA_
not modelled 9.5 33
PDB header:cytokine
Chain: A: PDB Molecule:granulin;
PDBTitle: ovgrn12-35_3s
43c5ireA_
not modelled 9.4 50
PDB header:virus
Chain: A: PDB Molecule:e protein;
PDBTitle: the cryo-em structure of zika virus
44d1z21a1
not modelled 9.3 17
Fold:Type III secretion system domain
Superfamily:Type III secretion system domain
Family:YopR Core
45c4b8eA_
not modelled 9.3 23
PDB header:ligase
Chain: A: PDB Molecule:e3 ubiquitin/isg15 ligase trim25;
PDBTitle: pry-spry domain of trim25
46c5ii5A_
not modelled 9.3 50
PDB header:cell adhesion
Chain: A: PDB Molecule:maltose-binding periplasmic protein,vitelline envelope
PDBTitle: crystal structure of red abalone verl repeat 1 at 1.8 a resolution
47c3ukwC_
not modelled 9.2 41
PDB header:protein transport/inhibitor
Chain: C: PDB Molecule:bimax1 peptide;
PDBTitle: mouse importin alpha: bimax1 peptide complex
48c4ntwB_
not modelled 9.1 25
PDB header:transport protein/toxin
Chain: B: PDB Molecule:neurotoxin mittx-alpha;
PDBTitle: structure of acid-sensing ion channel in complex with snake toxin
49c2kgyA_
not modelled 9.0 78
PDB header:immune system
Chain: A: PDB Molecule:possible exported protein;
PDBTitle: solution structure of rv0603 protein from mycobacterium2 tuberculosis h37rv
50c2ormA_
not modelled 9.0 31
PDB header:isomerase
Chain: A: PDB Molecule:probable tautomerase hp0924;
PDBTitle: crystal structure of the 4-oxalocrotonate tautomerase homologue dmpi2 from helicobacter pylori.
51d1g2914
not modelled 9.0 18
Fold:OB-fold
Superfamily:MOP-like
Family:ABC-transporter additional domain
52c3c6dB_
not modelled 8.9 50
PDB header:virus
Chain: B: PDB Molecule:polyprotein;
PDBTitle: the pseudo-atomic structure of dengue immature virus
53c1urzC_
not modelled 8.9 40
PDB header:virus/viral protein
Chain: C: PDB Molecule:envelope protein;
PDBTitle: low ph induced, membrane fusion conformation of the2 envelope protein of tick-borne encephalitis virus
54c4cbfE_
not modelled 8.8 50
PDB header:virus
Chain: E: PDB Molecule:envelope protein e;
PDBTitle: near-atomic resolution cryo-em structure of dengue serotype 4 virus
55d1ls1a1
not modelled 8.8 17
Fold:Four-helical up-and-down bundle
Superfamily:Domain of the SRP/SRP receptor G-proteins
Family:Domain of the SRP/SRP receptor G-proteins
56c3h0jA_
not modelled 8.6 55
PDB header:transferase
Chain: A: PDB Molecule:acetyl-coa carboxylase;
PDBTitle: crystal structure of the carboxyltransferase domain of2 acetyl-coenzyme a carboxylase in complex with compound 2
57d1mjea2
not modelled 8.6 27
Fold:BRCA2 tower domain
Superfamily:BRCA2 tower domain
Family:BRCA2 tower domain
58d1bjpa_
not modelled 8.4 29
Fold:Tautomerase/MIF
Superfamily:Tautomerase/MIF
Family:4-oxalocrotonate tautomerase-like
59c5i6fB_
not modelled 8.4 55
PDB header:ligase
Chain: B: PDB Molecule:acetyl-coa carboxylase-like protein;
PDBTitle: crystal structure of c-terminal variant 1 of chaetomium thermophilum2 acetyl-coa carboxylase
60c2lm3A_
not modelled 8.3 18
PDB header:ligase
Chain: A: PDB Molecule:tripartite motif-containing protein 5;
PDBTitle: structure of the rhesus monkey trim5alpha pryspry domain
61c5i6fA_
not modelled 8.2 55
PDB header:ligase
Chain: A: PDB Molecule:acetyl-coa carboxylase-like protein;
PDBTitle: crystal structure of c-terminal variant 1 of chaetomium thermophilum2 acetyl-coa carboxylase
62c1uytC_
not modelled 7.9 55
PDB header:transferase
Chain: C: PDB Molecule:acetyl-coa carboxylase;
PDBTitle: acetyl-coa carboxylase carboxyltransferase domain
63c3ctoE_
not modelled 7.8 63
PDB header:toxin inhibitor
Chain: E: PDB Molecule:uncharacterized protein rv3357/mt3465;
PDBTitle: crystal structure of m. tuberculosis yefm antitoxin
64c2x4kB_
not modelled 7.5 19
PDB header:isomerase
Chain: B: PDB Molecule:4-oxalocrotonate tautomerase;
PDBTitle: crystal structure of sar1376, a putative 4-oxalocrotonate2 tautomerase from the methicillin-resistant staphylococcus3 aureus (mrsa)
65c4rvqA_
not modelled 7.3 15
PDB header:protein binding
Chain: A: PDB Molecule:pre-mrna splicing helicase-like protein;
PDBTitle: pwi-like domain of chaetomium thermophilum brr2
66c3h6lA_
not modelled 7.2 26
PDB header:transferase
Chain: A: PDB Molecule:histone-lysine n-methyltransferase setd2;
PDBTitle: methyltransferase domain of human set domain-containing protein 2
67c1ebpC_
not modelled 6.9 43
PDB header:complex (cytokine receptor/peptide)
Chain: C: PDB Molecule:epo mimetics peptide 1;
PDBTitle: complex between the extracellular domain of erythropoietin2 (epo) receptor [ebp] and an agonist peptide [emp1]
68c1ebpD_
not modelled 6.9 43
PDB header:complex (cytokine receptor/peptide)
Chain: D: PDB Molecule:epo mimetics peptide 1;
PDBTitle: complex between the extracellular domain of erythropoietin2 (epo) receptor [ebp] and an agonist peptide [emp1]
69d1qzxa1
not modelled 6.9 24
Fold:Four-helical up-and-down bundle
Superfamily:Domain of the SRP/SRP receptor G-proteins
Family:Domain of the SRP/SRP receptor G-proteins
70c2x24B_
not modelled 6.8 64
PDB header:ligase
Chain: B: PDB Molecule:acetyl-coa carboxylase;
PDBTitle: bovine acc2 ct domain in complex with inhibitor
71c3rayA_
not modelled 6.7 14
PDB header:transcription
Chain: A: PDB Molecule:pr domain-containing protein 11;
PDBTitle: crystal structure of methyltransferase domain of human pr domain-2 containing protein 11
72c6bx3E_
not modelled 6.6 30
PDB header:gene regulation/transferase
Chain: E: PDB Molecule:histone-lysine n-methyltransferase, h3 lysine-4 specific;
PDBTitle: structure of histone h3k4 methyltransferase
73c5xyiV_
not modelled 6.6 33
PDB header:ribosome
Chain: V: PDB Molecule:40s ribosomal protein s21;
PDBTitle: small subunit of trichomonas vaginalis ribosome
74c2op8A_
not modelled 6.6 13
PDB header:isomerase
Chain: A: PDB Molecule:probable tautomerase ywhb;
PDBTitle: crystal structure of ywhb- homologue of 4-oxalocrotonate tautomerase
75c4wyoB_
not modelled 6.5 55
PDB header:ligase/ligase inhibitor
Chain: B: PDB Molecule:acetyl-coa carboxylase;
PDBTitle: crystal structure of human-yeast chimera acetyl coa carboxylase ct2 domain bound to compound 1
76d2fxta1
not modelled 6.5 17
Fold:Cystatin-like
Superfamily:NTF2-like
Family:TIM44-like
77c2yjtD_
not modelled 6.5 15
PDB header:hydrolase inhibitor/hydrolase
Chain: D: PDB Molecule:atp-dependent rna helicase srmb;
PDBTitle: crystal structure of e. coli dead-box protein srmb bound to regulator2 of ribonuclease activity a (rraa)
78d1z3xa1
not modelled 6.5 20
Fold:alpha-alpha superhelix
Superfamily:ARM repeat
Family:GUN4-associated domain
79d1xm0a1
not modelled 6.4 13
Fold:Mss4-like
Superfamily:Mss4-like
Family:SelR domain
80c4rz0B_
not modelled 6.4 12
PDB header:transferase
Chain: B: PDB Molecule:pfl0690c;
PDBTitle: crystal structure of plasmodium falciparum putative histone2 methyltransferase pfl0690c
81c3v2uC_
not modelled 6.3 16
PDB header:transcription
Chain: C: PDB Molecule:protein gal3;
PDBTitle: crystal structure of the yeast gal regulon complex of the repressor,2 gal80p, and the transducer, gal3p, with galactose and atp
82c5a53A_
not modelled 6.2 25
PDB header:transcription
Chain: A: PDB Molecule:regulator of ribosome biosynthesis;
PDBTitle: crystal structure of the rpf2-rrs1 complex
83c6a5mA_
not modelled 6.2 19
PDB header:gene regulation
Chain: A: PDB Molecule:histone-lysine n-methyltransferase, h3 lysine-9 specific
PDBTitle: crystal structure of arabidopsis thaliana suvh6 in complex with sam,2 form 2
84c4y7iB_
not modelled 6.2 29
PDB header:hydrolase
Chain: B: PDB Molecule:myotubularin-related protein 8;
PDBTitle: crystal structure of mtmr8
85c3hnaA_
not modelled 6.2 30
PDB header:hydrolase/hydrolase regulator
Chain: A: PDB Molecule:histone-lysine n-methyltransferase, h3 lysine-9 specific 5;
PDBTitle: crystal structure of catalytic domain of human euchromatic histone2 methyltransferase 1 in complex with sah and mono-methylated h3k93 peptide
86c3lo9B_
not modelled 6.1 45
PDB header:antimicrobial protein
Chain: B: PDB Molecule:neutrophil defensin 1;
PDBTitle: crystal structure of human alpha-defensin 1 (w26ahp mutant)
87c3lo9A_
not modelled 6.1 45
PDB header:antimicrobial protein
Chain: A: PDB Molecule:neutrophil defensin 1;
PDBTitle: crystal structure of human alpha-defensin 1 (w26ahp mutant)
88c3lo6B_
not modelled 6.1 45
PDB header:antimicrobial protein
Chain: B: PDB Molecule:neutrophil defensin 1;
PDBTitle: crystal structure of human alpha-defensin 1 (w26aba mutant)
89d1otfa_
not modelled 6.0 31
Fold:Tautomerase/MIF
Superfamily:Tautomerase/MIF
Family:4-oxalocrotonate tautomerase-like
90c3lo6A_
not modelled 6.0 45
PDB header:antimicrobial protein
Chain: A: PDB Molecule:neutrophil defensin 1;
PDBTitle: crystal structure of human alpha-defensin 1 (w26aba mutant)
91d1zs3a1
not modelled 6.0 7
Fold:Ferritin-like
Superfamily:Ferritin-like
Family:Ferritin
92c3dzvB_
not modelled 5.9 14
PDB header:transferase
Chain: B: PDB Molecule:4-methyl-5-(beta-hydroxyethyl)thiazole kinase;
PDBTitle: crystal structure of 4-methyl-5-(beta-hydroxyethyl)thiazole kinase2 (np_816404.1) from enterococcus faecalis v583 at 2.57 a resolution
93c6e1lA_
not modelled 5.9 33
PDB header:cytokine
Chain: A: PDB Molecule:granulin;
PDBTitle: grn3ala
94d1v43a2
not modelled 5.9 22
Fold:OB-fold
Superfamily:MOP-like
Family:ABC-transporter additional domain
95c4fdxB_
not modelled 5.8 13
PDB header:isomerase
Chain: B: PDB Molecule:4-oxalocrotonase tautomerase isozyme;
PDBTitle: kinetic and structural characterization of the 4-oxalocrotonate2 tautomerase isozymes from methylibium petroleiphilum
96c3q9dB_
not modelled 5.7 55
PDB header:unknown function
Chain: B: PDB Molecule:protein cpn_0803/cp_1068/cpj0803/cpb0832;
PDBTitle: crystal structure of cpn0803 from c. pneumoniae.
97c2p4fA_
not modelled 5.7 33
PDB header:chaperone
Chain: A: PDB Molecule:similar to sp
p32453 saccharomyces cerevisiae ynl315c
98c2lydA_
not modelled 5.7 19
PDB header:transcription/protein binding
Chain: A: PDB Molecule:decapping protein 1;
PDBTitle: the solution structure of the dm dcp1 evh1 domain in complex with the2 xrn1 dbm peptide
99c3ry0A_
not modelled 5.6 25
PDB header:isomerase
Chain: A: PDB Molecule:putative tautomerase;
PDBTitle: crystal structure of tomn, a 4-oxalocrotonate tautomerase homologue in2 tomaymycin biosynthetic pathway

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