Phyre Home Retrieve Phyre Job Id
Emailmdejesus@rockefeller.edu
DescriptionRVBD0506_(mmpS2)_596762_597205
DateFri Jul 26 01:50:05 BST 2019
Unique Job ID57f9effbfe0a23e4
SequenceVRMISVSGAV ... Download FASTA
Job Typenormal
Job Expiry

Summary 

Top model
Image coloured by rainbow N → C terminus
Model dimensions (Å):X:32.383 Y:50.227 Z:27.841
Model (left) based on template c2lw3A_
Top template information
PDB header:membrane protein
Chain: A: PDB Molecule:putative membrane protein mmps4;
PDBTitle: solution structure of the soluble domain of mmps4 from mycobacterium2 tuberculosis
Confidence and coverage
Confidence:100.0% Coverage: 60%
88 residues ( 60% of your sequence) have been modelled with 100.0% confidence by the single highest scoring template.
You may wish to submit your sequence to Phyrealarm. This will automatically scan your sequence every week for new potential templates as they appear in the Phyre2 library.
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Sequence analysis 

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Secondary structure and disorder prediction [Show] 

Domain analysis [Show] 

Detailed template information [Hide] 

 

#
Template Alignment Coverage3D Model Confidence
% i.d. Template Information
1c2lw3A_
100.0 44
PDB header:membrane protein
Chain: A: PDB Molecule:putative membrane protein mmps4;
PDBTitle: solution structure of the soluble domain of mmps4 from mycobacterium2 tuberculosis
2d1fv1b1
45.6 15
Fold:Immunoglobulin-like beta-sandwich
Superfamily:Immunoglobulin
Family:C1 set domains (antibody constant domain-like)
3c5lnkm_
40.8 24
PDB header:oxidoreductase
Chain: M: PDB Molecule:mitochondrial complex i, nd4 subunit;
PDBTitle: entire ovine respiratory complex i
4d1kona_
34.9 38
Fold:YebC-like
Superfamily:YebC-like
Family:YebC-like
5d1d5mb1
32.5 11
Fold:Immunoglobulin-like beta-sandwich
Superfamily:Immunoglobulin
Family:C1 set domains (antibody constant domain-like)
6c3osvC_
32.5 5
PDB header:structural protein
Chain: C: PDB Molecule:flagellar basal-body rod modification protein flgd;
PDBTitle: the crytsal structure of flgd from p. aeruginosa
7c2kvzA_
31.0 28
PDB header:structural genomics, unknown function
Chain: A: PDB Molecule:ispe;
PDBTitle: structure of residues 161-235 of putative peptidoglycan binding2 protein lmo0835 from listeria monocytogenes: target lmr64b of the3 northeast structural genomics consortium
8d1lfpa_
28.4 31
Fold:YebC-like
Superfamily:YebC-like
Family:YebC-like
9c4f3qA_
26.4 39
PDB header:transcription
Chain: A: PDB Molecule:transcriptional regulatory protein cbu_1566;
PDBTitle: structure of a yebc family protein (cbu_1566) from coxiella burnetii
10d1muja1
25.8 18
Fold:Immunoglobulin-like beta-sandwich
Superfamily:Immunoglobulin
Family:C1 set domains (antibody constant domain-like)
11d1mw7a_
24.2 25
Fold:YebC-like
Superfamily:YebC-like
Family:YebC-like
12c5o31b_
24.0 24
PDB header:oxidoreductase
Chain: B: PDB Molecule:nadh dehydrogenase [ubiquinone] iron-sulfur protein 7,
PDBTitle: mitochondrial complex i in the deactive state
13d1uvqb1
23.1 15
Fold:Immunoglobulin-like beta-sandwich
Superfamily:Immunoglobulin
Family:C1 set domains (antibody constant domain-like)
14d1klub1
21.7 16
Fold:Immunoglobulin-like beta-sandwich
Superfamily:Immunoglobulin
Family:C1 set domains (antibody constant domain-like)
15d3d85d2
19.6 21
Fold:Immunoglobulin-like beta-sandwich
Superfamily:Fibronectin type III
Family:Fibronectin type III
16c5lc5b_
19.5 24
PDB header:oxidoreductase
Chain: B: PDB Molecule:nadh dehydrogenase [ubiquinone] iron-sulfur protein 7,
PDBTitle: structure of mammalian respiratory complex i, class2
17c5ldxb_
19.3 24
PDB header:oxidoreductase
Chain: B: PDB Molecule:nadh dehydrogenase [ubiquinone] iron-sulfur protein 7,
PDBTitle: structure of mammalian respiratory complex i, class3.
18c5ldwb_
19.3 24
PDB header:oxidoreductase
Chain: B: PDB Molecule:nadh dehydrogenase [ubiquinone] iron-sulfur protein 7,
PDBTitle: structure of mammalian respiratory complex i, class1
19d1es0b1
16.3 11
Fold:Immunoglobulin-like beta-sandwich
Superfamily:Immunoglobulin
Family:C1 set domains (antibody constant domain-like)
20c5aeoA_
16.2 15
PDB header:immune system
Chain: A: PDB Molecule:r. equi vapg protein;
PDBTitle: virulence-associated protein vapg from the intracellular2 pathogen rhodococcus equi
21d1fngb1
not modelled 15.1 17
Fold:Immunoglobulin-like beta-sandwich
Superfamily:Immunoglobulin
Family:C1 set domains (antibody constant domain-like)
22c5e09A_
not modelled 15.0 18
PDB header:hydrolase
Chain: A: PDB Molecule:cellulase;
PDBTitle: structural insight of a trimodular halophilic cellulase with a family2 46 carbohydrate-binding module
23c2amnA_
not modelled 14.1 50
PDB header:antimicrobial protein
Chain: A: PDB Molecule:cathelicidin;
PDBTitle: solution structure of fowlicidin-1, a novel cathelicidin2 antimicrobial peptide from chicken
24c2na6A_
not modelled 13.5 26
PDB header:apoptosis
Chain: A: PDB Molecule:tumor necrosis factor receptor superfamily member 6;
PDBTitle: transmembrane domain of mouse fas/cd95 death receptor
25c2na6C_
not modelled 13.5 26
PDB header:apoptosis
Chain: C: PDB Molecule:tumor necrosis factor receptor superfamily member 6;
PDBTitle: transmembrane domain of mouse fas/cd95 death receptor
26c4csbA_
not modelled 13.5 15
PDB header:unknown function
Chain: A: PDB Molecule:virulence associated protein vapd;
PDBTitle: structure of the virulence-associated protein vapd from the2 intracellular pathogen rhodococcus equi.
27c2na6B_
not modelled 13.0 26
PDB header:apoptosis
Chain: B: PDB Molecule:tumor necrosis factor receptor superfamily member 6;
PDBTitle: transmembrane domain of mouse fas/cd95 death receptor
28d1kska3
not modelled 12.7 27
Fold:Alpha-L RNA-binding motif
Superfamily:Alpha-L RNA-binding motif
Family:Pseudouridine synthase RsuA N-terminal domain
29d1jk8a1
not modelled 12.5 16
Fold:Immunoglobulin-like beta-sandwich
Superfamily:Immunoglobulin
Family:C1 set domains (antibody constant domain-like)
30d1c16a1
not modelled 12.5 7
Fold:Immunoglobulin-like beta-sandwich
Superfamily:Immunoglobulin
Family:C1 set domains (antibody constant domain-like)
31c4cv7A_
not modelled 12.4 12
PDB header:toxin
Chain: A: PDB Molecule:virulence associated protein vapb;
PDBTitle: crystal structure of rhodococcus equi vapb
32d1ok0a_
not modelled 11.9 14
Fold:alpha-Amylase inhibitor tendamistat
Superfamily:alpha-Amylase inhibitor tendamistat
Family:alpha-Amylase inhibitor tendamistat
33d1zs8a1
not modelled 11.3 11
Fold:Immunoglobulin-like beta-sandwich
Superfamily:Immunoglobulin
Family:C1 set domains (antibody constant domain-like)
34c2xkuA_
not modelled 10.7 10
PDB header:immune system
Chain: A: PDB Molecule:beta-2-microglobulin;
PDBTitle: prion-like conversion during amyloid formation at atomic resolution
35d1qqda1
not modelled 10.4 8
Fold:Immunoglobulin-like beta-sandwich
Superfamily:Immunoglobulin
Family:C1 set domains (antibody constant domain-like)
36d2iada1
not modelled 9.7 18
Fold:Immunoglobulin-like beta-sandwich
Superfamily:Immunoglobulin
Family:C1 set domains (antibody constant domain-like)
37d1mhca1
not modelled 9.7 8
Fold:Immunoglobulin-like beta-sandwich
Superfamily:Immunoglobulin
Family:C1 set domains (antibody constant domain-like)
38d1uvqa1
not modelled 9.5 15
Fold:Immunoglobulin-like beta-sandwich
Superfamily:Immunoglobulin
Family:C1 set domains (antibody constant domain-like)
39c2kerA_
not modelled 9.5 23
PDB header:hydrolase inhibitor
Chain: A: PDB Molecule:alpha-amylase inhibitor z-2685;
PDBTitle: alpha-amylase inhibitor parvulustat (z-2685) from2 streptomyces parvulus
40d1xtda2
not modelled 9.1 19
Fold:OB-fold
Superfamily:Nucleic acid-binding proteins
Family:Cold shock DNA-binding domain-like
41d1ywka1
not modelled 9.0 38
Fold:Double-stranded beta-helix
Superfamily:RmlC-like cupins
Family:KduI-like
42d1lk2a1
not modelled 8.9 6
Fold:Immunoglobulin-like beta-sandwich
Superfamily:Immunoglobulin
Family:C1 set domains (antibody constant domain-like)
43c1q40C_
not modelled 8.5 67
PDB header:translation
Chain: C: PDB Molecule:mrna transport regulator mtr2;
PDBTitle: crystal structure of the c. albicans mtr2-mex67 m domain complex
44c2kt7A_
not modelled 8.5 23
PDB header:cell adhesion, membrane protein
Chain: A: PDB Molecule:putative peptidoglycan bound protein (lpxtg
PDBTitle: solution nmr structure of mucin-binding domain of protein2 lmo0835 from listeria monocytogenes, northeast structural3 genomics consortium target lmr64a
45c6b6lB_
not modelled 8.1 18
PDB header:hydrolase
Chain: B: PDB Molecule:glycosyl hydrolase family 2, sugar binding domain protein;
PDBTitle: the crystal structure of glycosyl hydrolase family 2 (gh2) member from2 bacteroides cellulosilyticus dsm 14838
46c2kppA_
not modelled 8.0 30
PDB header:structural genomics, unknown function
Chain: A: PDB Molecule:lin0431 protein;
PDBTitle: solution nmr structure of lin0431 protein from listeria innocua.2 northeast structural genomics consortium target lkr112
47d1fnga1
not modelled 7.9 14
Fold:Immunoglobulin-like beta-sandwich
Superfamily:Immunoglobulin
Family:C1 set domains (antibody constant domain-like)
48d1dmla1
not modelled 7.7 22
Fold:DNA clamp
Superfamily:DNA clamp
Family:DNA polymerase processivity factor
49c1ywkE_
not modelled 7.7 38
PDB header:isomerase
Chain: E: PDB Molecule:4-deoxy-l-threo-5-hexosulose-uronate ketol-
PDBTitle: crystal structure of 4-deoxy-1-threo-5-hexosulose-uronate2 ketol-isomerase from enterococcus faecalis
50d2rb6a1
not modelled 7.5 28
Fold:Sm-like fold
Superfamily:Sm-like ribonucleoproteins
Family:YgdI/YgdR-like
51d1k8ib1
not modelled 7.2 19
Fold:Immunoglobulin-like beta-sandwich
Superfamily:Immunoglobulin
Family:C1 set domains (antibody constant domain-like)
52c2nykA_
not modelled 7.2 23
PDB header:viral protein
Chain: A: PDB Molecule:m157;
PDBTitle: crystal structure of m157 from mouse cytomegalovirus
53c3owrA_
not modelled 7.1 15
PDB header:unknown function
Chain: A: PDB Molecule:uncharacterized hypothetical protein;
PDBTitle: crystal structure of a putative secreted protein (bf4250) from2 bacteroides fragilis nctc 9343 at 1.81 a resolution
54d3bdua1
not modelled 7.1 20
Fold:Sm-like fold
Superfamily:Sm-like ribonucleoproteins
Family:YgdI/YgdR-like
55d1x6oa2
not modelled 7.0 19
Fold:OB-fold
Superfamily:Nucleic acid-binding proteins
Family:Cold shock DNA-binding domain-like
56d1xrua1
not modelled 6.8 38
Fold:Double-stranded beta-helix
Superfamily:RmlC-like cupins
Family:KduI-like
57d1pkla1
not modelled 6.8 8
Fold:PK beta-barrel domain-like
Superfamily:PK beta-barrel domain-like
Family:Pyruvate kinase beta-barrel domain
58d2fa8a1
not modelled 6.7 26
Fold:Thioredoxin fold
Superfamily:Thioredoxin-like
Family:Selenoprotein W-related
59c3a5pD_
not modelled 6.4 21
PDB header:sugar binding protein
Chain: D: PDB Molecule:haemagglutinin i;
PDBTitle: crystal structure of hemagglutinin
60c2obkE_
not modelled 6.4 26
PDB header:structural genomics, unknown function
Chain: E: PDB Molecule:selt/selw/selh selenoprotein domain;
PDBTitle: x-ray structure of the putative se binding protein from pseudomonas2 fluorescens. northeast structural genomics consortium target plr6.
61c4gdzA_
not modelled 6.3 30
PDB header:structural genomics, unknown function
Chain: A: PDB Molecule:uncharacterized protein;
PDBTitle: crystal structure of a duf4251 family protein (bacegg_02002) from2 bacteroides eggerthii dsm 20697 at 1.95 a resolution
62d1eg3a3
not modelled 6.3 27
Fold:WW domain-like
Superfamily:WW domain
Family:WW domain
63c6mhqE_
not modelled 6.2 20
PDB header:membrane protein
Chain: E: PDB Molecule:gap junction alpha-3 protein, connexin-46;
PDBTitle: structure of connexin-46 intercellular gap junction channel at 3.42 angstrom resolution by cryoem
64d2cs4a1
not modelled 6.0 20
Fold:beta-Grasp (ubiquitin-like)
Superfamily:Ubiquitin-like
Family:Ras-binding domain, RBD
65c5ee2A_
not modelled 6.0 50
PDB header:metal transport
Chain: A: PDB Molecule:hemoglobin-haptoglobin-utilization protein;
PDBTitle: the crystal structure of the c-terminal beta-barrel of hpua from2 neisseria gonorrhoeae
66d2ra2a1
not modelled 5.6 20
Fold:Sm-like fold
Superfamily:Sm-like ribonucleoproteins
Family:YgdI/YgdR-like
67c3py9A_
not modelled 5.5 15
PDB header:transferase
Chain: A: PDB Molecule:protein kinase;
PDBTitle: x-ray structural studies of the entire extra-cellular region of the2 ser/thr kinase prkc from staphylococcus aureus
68c2mgyA_
not modelled 5.5 8
PDB header:membrane protein
Chain: A: PDB Molecule:translocator protein;
PDBTitle: solution structure of the mitochondrial translocator protein (tspo) in2 complex with its high-affinity ligand pk11195
69d1ydwa2
not modelled 5.5 33
Fold:FwdE/GAPDH domain-like
Superfamily:Glyceraldehyde-3-phosphate dehydrogenase-like, C-terminal domain
Family:Glucose 6-phosphate dehydrogenase-like
70c2k9yA_
not modelled 5.5 21
PDB header:transferase
Chain: A: PDB Molecule:ephrin type-a receptor 2;
PDBTitle: epha2 dimeric structure in the lipidic bicelle at ph 5.0
71c2k9yB_
not modelled 5.5 21
PDB header:transferase
Chain: B: PDB Molecule:ephrin type-a receptor 2;
PDBTitle: epha2 dimeric structure in the lipidic bicelle at ph 5.0
72d1iaka1
not modelled 5.4 18
Fold:Immunoglobulin-like beta-sandwich
Superfamily:Immunoglobulin
Family:C1 set domains (antibody constant domain-like)
73d1of5b_
not modelled 5.3 33
Fold:Cystatin-like
Superfamily:NTF2-like
Family:NTF2-like
74d2jn0a1
not modelled 5.2 15
Fold:Sm-like fold
Superfamily:Sm-like ribonucleoproteins
Family:YgdI/YgdR-like
75d1s9va1
not modelled 5.2 16
Fold:Immunoglobulin-like beta-sandwich
Superfamily:Immunoglobulin
Family:C1 set domains (antibody constant domain-like)
76d1a3xa1
not modelled 5.0 5
Fold:PK beta-barrel domain-like
Superfamily:PK beta-barrel domain-like
Family:Pyruvate kinase beta-barrel domain
77d1dgja2
not modelled 5.0 40
Fold:beta-Grasp (ubiquitin-like)
Superfamily:2Fe-2S ferredoxin-like
Family:2Fe-2S ferredoxin domains from multidomain proteins

Binding site prediction 

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Transmembrane helix prediction 

Transmembrane helices have been predicted in your sequence to adopt the topology shown below