Phyre Home Retrieve Phyre Job Id
Emailmdejesus@rockefeller.edu
DescriptionRVBD0514_(-)_606152_606451
DateFri Jul 26 01:50:06 BST 2019
Unique Job ID7675dae264950e65
SequenceVIARYRAGAE ... Download FASTA
Job Typenormal
Job Expiry

Summary 

Top model
Image coloured by rainbow N → C terminus
Model dimensions (Å):X:13.096 Y:10.452 Z:16.762
Model (left) based on template d3ci0k1
Top template information
Fold:SAM domain-like
Superfamily:GspK insert domain-like
Family:GspK insert domain-like
Confidence and coverage
Confidence: 20.2% Coverage: 9%
9 residues ( 9% of your sequence) have been modelled with 20.2% confidence by the single highest scoring template.
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3D viewing
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Sequence analysis 

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Secondary structure and disorder prediction [Show] 

Domain analysis [Show] 

Detailed template information [Hide] 

 

#
Template Alignment Coverage3D Model Confidence
% i.d. Template Information
1d3ci0k1
20.2 67
Fold:SAM domain-like
Superfamily:GspK insert domain-like
Family:GspK insert domain-like
2c2lorA_
20.2 27
PDB header:membrane protein
Chain: A: PDB Molecule:transmembrane protein 141;
PDBTitle: backbone structure of human membrane protein tmem141
3c5zhhB_
14.5 35
PDB header:hydrolase
Chain: B: PDB Molecule:inositol-1-monophosphatase;
PDBTitle: structure of inositol monophosphatase from anabaena (nostoc) sp. pcc2 7120
4d1isua_
11.8 58
Fold:HIPIP (high potential iron protein)
Superfamily:HIPIP (high potential iron protein)
Family:HIPIP (high potential iron protein)
5c5z62N_
9.5 38
PDB header:electron transport
Chain: N: PDB Molecule:cytochrome c oxidase subunit ndufa4;
PDBTitle: structure of human cytochrome c oxidase
6d1vdwa_
8.5 30
Fold:Carbohydrate phosphatase
Superfamily:Carbohydrate phosphatase
Family:Inositol monophosphatase/fructose-1,6-bisphosphatase-like
7c2pcrA_
8.2 35
PDB header:hydrolase
Chain: A: PDB Molecule:inositol-1-monophosphatase;
PDBTitle: crystal structure of myo-inositol-1(or 4)-monophosphatase (aq_1983)2 from aquifex aeolicus vf5
8d1f5ma_
8.2 16
Fold:Profilin-like
Superfamily:GAF domain-like
Family:GAF domain
9d2pkha1
8.0 11
Fold:Chorismate lyase-like
Superfamily:Chorismate lyase-like
Family:UTRA domain
10c2gk2B_
7.9 41
PDB header:cell adhesion
Chain: B: PDB Molecule:carcinoembryonic antigen-related cell adhesion molecule 1;
PDBTitle: crystal structure of the n terminal domain of human ceacam1
11c5eq9A_
7.4 25
PDB header:biosynthetic protein
Chain: A: PDB Molecule:inositol monophosphatase;
PDBTitle: crystal structure of medicago truncatula histidinol-phosphate2 phosphatase (mthpp) in complex with l-histidinol phosphate and mg2+
12c4lduA_
7.2 60
PDB header:dna binding protein
Chain: A: PDB Molecule:auxin response factor 5;
PDBTitle: crystal structure of the dna binding domain of arabidopsis thaliana2 auxin response factor 5
13c3s9vD_
7.1 40
PDB header:lyase, isomerase
Chain: D: PDB Molecule:abietadiene synthase, chloroplastic;
PDBTitle: abietadiene synthase from abies grandis
14c4ldxB_
7.0 56
PDB header:transcription/dna
Chain: B: PDB Molecule:auxin response factor 1;
PDBTitle: crystal structure of the dna binding domain of arabidopsis thaliana2 auxin response factor 1 (arf1) in complex with protomor-like sequence3 er7
15c2dksA_
6.9 31
PDB header:cell adhesion
Chain: A: PDB Molecule:carcinoembryonic antigen-related cell adhesion
PDBTitle: solution structure of the first ig-like domain of human2 carcinoembryonic antigen related cell adhesion molecule 8
16d1rk8c_
6.7 57
Fold:WW domain-like
Superfamily:Pym (Within the bgcn gene intron protein, WIBG), N-terminal domain
Family:Pym (Within the bgcn gene intron protein, WIBG), N-terminal domain
17c1rk8C_
6.7 57
PDB header:translation
Chain: C: PDB Molecule:within the bgcn gene intron protein;
PDBTitle: structure of the cytosolic protein pym bound to the mago-2 y14 core of the exon junction complex
18c2jijA_
6.6 25
PDB header:hydrolase
Chain: A: PDB Molecule:prolyl-4 hydroxylase;
PDBTitle: crystal structure of the apo form of chlamydomonas2 reinhardtii prolyl-4 hydroxylase type i
19c3pybB_
5.9 40
PDB header:isomerase
Chain: B: PDB Molecule:ent-copalyl diphosphate synthase, chloroplastic;
PDBTitle: crystal structure of ent-copalyl diphosphate synthase from arabidopsis2 thaliana in complex with 13-aza-13,14-dihydrocopalyl diphosphate
20c4qycA_
5.8 41
PDB header:cell adhesion
Chain: A: PDB Molecule:carcinoembryonic antigen-related cell adhesion molecule 1,
PDBTitle: crystal structure of the chimeric protein human ceacam1: human tim32 membrane distal amino terminal (n)-domain
21d1l6za1
not modelled 5.7 33
Fold:Immunoglobulin-like beta-sandwich
Superfamily:Immunoglobulin
Family:V set domains (antibody variable domain-like)
22c2czhB_
not modelled 5.7 20
PDB header:hydrolase
Chain: B: PDB Molecule:inositol monophosphatase 2;
PDBTitle: crystal structure of human myo-inositol monophosphatase 22 (impa2) with phosphate ion (orthorhombic form)
23c3u6gB_
not modelled 5.5 26
PDB header:structural genomics, unknown function
Chain: B: PDB Molecule:uncharacterized protein duf4425;
PDBTitle: crystal structure of a domain of unknown function, duf4425 (bvu_3708)2 from bacteroides vulgatus atcc 8482 at 1.35 a resolution
24c3p5rB_
not modelled 5.4 44
PDB header:lyase
Chain: B: PDB Molecule:taxadiene synthase;
PDBTitle: crystal structure of taxadiene synthase from pacific yew (taxus2 brevifolia) in complex with mg2+ and 2-fluorogeranylgeranyl3 diphosphate
25c5bp8A_
not modelled 5.3 42
PDB header:isomerase
Chain: A: PDB Molecule:ent-copalyl diphosphate synthase;
PDBTitle: ent-copalyl diphosphate synthase from streptomyces platensis
26d1c3pa_
not modelled 5.2 50
Fold:Arginase/deacetylase
Superfamily:Arginase/deacetylase
Family:Histone deacetylase, HDAC
27d1mpga2
not modelled 5.1 21
Fold:TBP-like
Superfamily:TATA-box binding protein-like
Family:DNA repair glycosylase, N-terminal domain

Binding site prediction 

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Transmembrane helix prediction 

Transmembrane helices have been predicted in your sequence to adopt the topology shown below