Phyre Home Retrieve Phyre Job Id
Emailmdejesus@rockefeller.edu
DescriptionRVBD0522_(gabP)_613041_614345
DateFri Jul 26 01:50:07 BST 2019
Unique Job ID67d5d176e74e47d6
SequenceMIAIGGVIGA ... Download FASTA
Job Typenormal
Job Expiry

Summary 

Top model
Image coloured by rainbow N → C terminus
Model dimensions (Å):X:62.732 Y:56.763 Z:59.569
Model (left) based on template c4djiA_
Top template information
PDB header:transport protein
Chain: A: PDB Molecule:probable glutamate/gamma-aminobutyrate antiporter;
PDBTitle: structure of glutamate-gaba antiporter gadc
Confidence and coverage
Confidence:100.0% Coverage: 97%
423 residues ( 97% of your sequence) have been modelled with 100.0% confidence by the single highest scoring template.
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Sequence analysis 

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Secondary structure and disorder prediction [Show] 

Domain analysis [Show] 

Detailed template information [Hide] 

 

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Template Alignment Coverage3D Model Confidence
% i.d. Template Information
1c4djiA_



100.0 17
PDB header:transport protein
Chain: A: PDB Molecule:probable glutamate/gamma-aminobutyrate antiporter;
PDBTitle: structure of glutamate-gaba antiporter gadc
2c6f2wA_



100.0 17
PDB header:transport protein
Chain: A: PDB Molecule:putative amino acid/polyamine transport protein;
PDBTitle: bacterial asc transporter crystal structure in open to in conformation
3c5oqtA_



100.0 18
PDB header:transport protein
Chain: A: PDB Molecule:amino acid transporter;
PDBTitle: crystal structure of a bacterial cationic amino acid transporter (cat)2 homologue
4c6irtB_



100.0 15
PDB header:membrane protein
Chain: B: PDB Molecule:large neutral amino acids transporter small subunit 1;
PDBTitle: human lat1-4f2hc complex bound with bch
5c3giaA_



100.0 19
PDB header:transport protein
Chain: A: PDB Molecule:uncharacterized protein mj0609;
PDBTitle: crystal structure of apct transporter
6c3lrcC_



100.0 19
PDB header:transport protein
Chain: C: PDB Molecule:arginine/agmatine antiporter;
PDBTitle: structure of e. coli adic (p1)
7c6jmqA_



100.0 17
PDB header:membrane protein/immune system
Chain: A: PDB Molecule:large neutral amino acids transporter small subunit 1;
PDBTitle: lat1-cd98hc complex bound to mem-108 fab
8c6csfC_



100.0 13
PDB header:membrane protein
Chain: C: PDB Molecule:sodium/alanine symporter agcs;
PDBTitle: crystal structure of sodium/alanine symporter agcs with d-alanine2 bound
9c2jlnA_



100.0 12
PDB header:membrane protein
Chain: A: PDB Molecule:mhp1;
PDBTitle: structure of mhp1, a nucleobase-cation-symport-1 family2 transporter
10c6c08F_



99.7 11
PDB header:membrane protein
Chain: F: PDB Molecule:sodium-coupled neutral amino acid transporter 9;
PDBTitle: zebrafish slc38a9 with arginine bound in the cytosol open state
11c5nvaA_



99.5 10
PDB header:membrane protein
Chain: A: PDB Molecule:putative sodium:solute symporter;
PDBTitle: substrate-bound outward-open state of a na+-coupled sialic acid2 symporter reveals a novel na+-site
12c6c08C_



99.2 11
PDB header:membrane protein
Chain: C: PDB Molecule:sodium-coupled neutral amino acid transporter 9;
PDBTitle: zebrafish slc38a9 with arginine bound in the cytosol open state
13c2xq2A_



99.2 14
PDB header:transport protein
Chain: A: PDB Molecule:sodium/glucose cotransporter;
PDBTitle: structure of the k294a mutant of vsglt
14c4wgwA_



99.0 8
PDB header:transport protein
Chain: A: PDB Molecule:divalent metal cation transporter mnth;
PDBTitle: staphylococcus capitis divalent metal ion transporter (dmt) in complex2 with manganese
15c4wgvC_



99.0 8
PDB header:transport protein
Chain: C: PDB Molecule:divalent metal cation transporter mnth;
PDBTitle: crystal structure of staphylococcus capitis divalent metal ion2 transporter (dmt) in complex with nanobody
16c3dh4A_



99.0 14
PDB header:transport protein
Chain: A: PDB Molecule:sodium/glucose cotransporter;
PDBTitle: crystal structure of sodium/sugar symporter with bound galactose from2 vibrio parahaemolyticus
17c5m87A_



98.2 11
PDB header:transport protein
Chain: A: PDB Molecule:divalent metal cation transporter mnth;
PDBTitle: crystal structure of eremococcus coleocola manganese transporter
18c5i6xA_



97.0 13
PDB header:membrane protein
Chain: A: PDB Molecule:sodium-dependent serotonin transporter;
PDBTitle: x-ray structure of the ts3 human serotonin transporter complexed with2 paroxetine at the central site
19d2a65a1



96.4 12
Fold:SNF-like
Superfamily:SNF-like
Family:SNF-like
20c4ainB_



96.2 9
PDB header:membrane protein
Chain: B: PDB Molecule:glycine betaine transporter betp;
PDBTitle: crystal structure of betp with asymmetric protomers.
21c4m48A_



not modelled 96.2 13
PDB header:transport protein
Chain: A: PDB Molecule:transporter;
PDBTitle: x-ray structure of dopamine transporter elucidates antidepressant2 mechanism
22c2w8aC_



not modelled 93.6 9
PDB header:membrane protein
Chain: C: PDB Molecule:glycine betaine transporter betp;
PDBTitle: crystal structure of the sodium-coupled glycine betaine2 symporter betp from corynebacterium glutamicum with bound3 substrate
23c4us3A_



not modelled 93.6 13
PDB header:transport protein
Chain: A: PDB Molecule:transporter;
PDBTitle: crystal structure of the bacterial nss member mhst in an2 occluded inward-facing state
24c5kteA_



not modelled 89.6 11
PDB header:transport protein/immune system
Chain: A: PDB Molecule:divalent metal cation transporter mnth;
PDBTitle: crystal structure of deinococcus radiodurans mnth, an nramp-family2 transition metal transporter
25c3hfxA_



not modelled 85.5 14
PDB header:transport protein
Chain: A: PDB Molecule:l-carnitine/gamma-butyrobetaine antiporter;
PDBTitle: crystal structure of carnitine transporter
26c6adqP_



not modelled 36.5 14
PDB header:electron transport
Chain: P: PDB Molecule:prokaryotic respiratory supercomplex associate factor 1
PDBTitle: respiratory complex ciii2civ2sod2 from mycobacterium smegmatis
27c6nbxG_



not modelled 34.0 10
PDB header:oxidoreductase
Chain: G: PDB Molecule:nadh-quinone oxidoreductase subunit j;
PDBTitle: t.elongatus ndh (data-set 2)
28c3rkoF_



not modelled 22.3 10
PDB header:oxidoreductase
Chain: F: PDB Molecule:nadh-quinone oxidoreductase subunit j;
PDBTitle: crystal structure of the membrane domain of respiratory complex i from2 e. coli at 3.0 angstrom resolution
29d1fftb2



not modelled 19.7 8
Fold:Transmembrane helix hairpin
Superfamily:Cytochrome c oxidase subunit II-like, transmembrane region
Family:Cytochrome c oxidase subunit II-like, transmembrane region
30c3b8eC_



not modelled 18.1 11
PDB header:hydrolase/transport protein
Chain: C: PDB Molecule:sodium/potassium-transporting atpase subunit
PDBTitle: crystal structure of the sodium-potassium pump
31c5khnB_



not modelled 15.4 12
PDB header:membrane protein
Chain: B: PDB Molecule:rnd transporter;
PDBTitle: crystal structures of the burkholderia multivorans hopanoid2 transporter hpnn
32c2m67A_



not modelled 13.3 11
PDB header:transport protein
Chain: A: PDB Molecule:merf;
PDBTitle: full-length mercury transporter protein merf in lipid bilayer2 membranes
33c5do7B_



not modelled 12.2 9
PDB header:transport protein
Chain: B: PDB Molecule:atp-binding cassette sub-family g member 8;
PDBTitle: crystal structure of the human sterol transporter abcg5/abcg8
34c5zlgA_



not modelled 12.0 17
PDB header:oxidoreductase
Chain: A: PDB Molecule:cytochrome b reductase 1;
PDBTitle: human duodenal cytochrome b (dcytb) in zinc ion and ascorbate bound2 form
35c1m57H_



not modelled 11.8 16
PDB header:oxidoreductase
Chain: H: PDB Molecule:cytochrome c oxidase;
PDBTitle: structure of cytochrome c oxidase from rhodobacter2 sphaeroides (eq(i-286) mutant))
36c6c14A_



not modelled 11.2 10
PDB header:membrane protein, metal transport
Chain: A: PDB Molecule:protocadherin-15;
PDBTitle: cryoem structure of mouse pcdh15-1ec-lhfpl5 complex
37c4j72A_



not modelled 11.1 5
PDB header:transferase
Chain: A: PDB Molecule:phospho-n-acetylmuramoyl-pentapeptide-transferase;
PDBTitle: crystal structure of polyprenyl-phosphate n-acetyl hexosamine 1-2 phosphate transferase
38c2na6B_



not modelled 11.0 8
PDB header:apoptosis
Chain: B: PDB Molecule:tumor necrosis factor receptor superfamily member 6;
PDBTitle: transmembrane domain of mouse fas/cd95 death receptor
39c2na6C_



not modelled 11.0 8
PDB header:apoptosis
Chain: C: PDB Molecule:tumor necrosis factor receptor superfamily member 6;
PDBTitle: transmembrane domain of mouse fas/cd95 death receptor
40c2na6A_



not modelled 11.0 8
PDB header:apoptosis
Chain: A: PDB Molecule:tumor necrosis factor receptor superfamily member 6;
PDBTitle: transmembrane domain of mouse fas/cd95 death receptor
41c2lowA_



not modelled 10.6 9
PDB header:membrane protein
Chain: A: PDB Molecule:apelin receptor;
PDBTitle: solution structure of ar55 in 50% hfip
42d1eysh2



not modelled 10.2 10
Fold:Single transmembrane helix
Superfamily:Photosystem II reaction centre subunit H, transmembrane region
Family:Photosystem II reaction centre subunit H, transmembrane region
43c4x5mB_



not modelled 10.0 13
PDB header:transport protein
Chain: B: PDB Molecule:uncharacterized protein;
PDBTitle: crystal structure of semisweet in the inward-open conformation
44c6gcs6_



not modelled 9.8 12
PDB header:oxidoreductase
Chain: 6: PDB Molecule:nd6 subunit (nu6m);
PDBTitle: cryo-em structure of respiratory complex i from yarrowia lipolytica
45c3j1zP_



not modelled 9.8 8
PDB header:metal transport
Chain: P: PDB Molecule:cation efflux family protein;
PDBTitle: inward-facing conformation of the zinc transporter yiip revealed by2 cryo-electron microscopy
46c2k1aA_



not modelled 9.7 9
PDB header:cell adhesion
Chain: A: PDB Molecule:integrin alpha-iib;
PDBTitle: bicelle-embedded integrin alpha(iib) transmembrane segment
47c6hwhL_



not modelled 9.6 14
PDB header:electron transport
Chain: L: PDB Molecule:cytochrome c oxidase subunit 2;
PDBTitle: structure of a functional obligate respiratory supercomplex from2 mycobacterium smegmatis
48c2bbjB_



not modelled 9.4 10
PDB header:metal transport/membrane protein
Chain: B: PDB Molecule:divalent cation transport-related protein;
PDBTitle: crystal structure of the cora mg2+ transporter
49d3ehbb2



not modelled 9.3 17
Fold:Transmembrane helix hairpin
Superfamily:Cytochrome c oxidase subunit II-like, transmembrane region
Family:Cytochrome c oxidase subunit II-like, transmembrane region
50c1qleB_



not modelled 9.1 17
PDB header:oxidoreductase/immune system
Chain: B: PDB Molecule:cytochrome c oxidase polypeptide ii;
PDBTitle: cryo-structure of the paracoccus denitrificans four-subunit cytochrome2 c oxidase in the completely oxidized state complexed with an antibody3 fv fragment
51c1ar1B_



not modelled 9.1 17
PDB header:complex (oxidoreductase/antibody)
Chain: B: PDB Molecule:cytochrome c oxidase;
PDBTitle: structure at 2.7 angstrom resolution of the paracoccus2 denitrificans two-subunit cytochrome c oxidase complexed3 with an antibody fv fragment
52c2yevB_



not modelled 9.0 17
PDB header:electron transport
Chain: B: PDB Molecule:cytochrome c oxidase subunit 2;
PDBTitle: structure of caa3-type cytochrome oxidase
53c4n7wA_



not modelled 8.9 10
PDB header:transport protein
Chain: A: PDB Molecule:transporter, sodium/bile acid symporter family;
PDBTitle: crystal structure of the sodium bile acid symporter from yersinia2 frederiksenii
54c2kncA_



not modelled 8.6 9
PDB header:cell adhesion
Chain: A: PDB Molecule:integrin alpha-iib;
PDBTitle: platelet integrin alfaiib-beta3 transmembrane-cytoplasmic2 heterocomplex
55d3dtub2



not modelled 8.4 16
Fold:Transmembrane helix hairpin
Superfamily:Cytochrome c oxidase subunit II-like, transmembrane region
Family:Cytochrome c oxidase subunit II-like, transmembrane region
56c3ukxC_



not modelled 8.1 50
PDB header:protein transport/inhibitor
Chain: C: PDB Molecule:bimax2 peptide;
PDBTitle: mouse importin alpha: bimax2 peptide complex
57c1cl4A_



not modelled 8.1 25
PDB header:viral protein
Chain: A: PDB Molecule:protein (gag polyprotein);
PDBTitle: nucleocapsid protein from mason-pfizer monkey virus (mpmv)
58c4k1cB_



not modelled 8.0 13
PDB header:membrane protein/metal transport
Chain: B: PDB Molecule:vacuolar calcium ion transporter;
PDBTitle: vcx1 calcium/proton exchanger
59c5kzoA_



not modelled 7.4 22
PDB header:transcription
Chain: A: PDB Molecule:neurogenic locus notch homolog protein 1;
PDBTitle: notch1 transmembrane and associated juxtamembrane segment
60d1dsva_



not modelled 7.4 25
Fold:Retrovirus zinc finger-like domains
Superfamily:Retrovirus zinc finger-like domains
Family:Retrovirus zinc finger-like domains
61c4m5bA_



not modelled 7.3 9
PDB header:membrane protein
Chain: A: PDB Molecule:cobalamin biosynthesis protein cbim;
PDBTitle: crystal structure of an truncated transition metal transporter
62c4m5cA_



not modelled 7.3 9
PDB header:membrane protein
Chain: A: PDB Molecule:cobalamin biosynthesis protein cbim;
PDBTitle: crystal structure of an truncated transition metal transporter
63c5v2sA_



not modelled 7.0 19
PDB header:viral protein
Chain: A: PDB Molecule:envelope glycoprotein b;
PDBTitle: crystal structure of glycoprotein b from herpes simplex virus type i
64c2micA_



not modelled 7.0 12
PDB header:membrane protein
Chain: A: PDB Molecule:tumor necrosis factor receptor superfamily member 16;
PDBTitle: nmr structure of p75 transmembrane domain in dpc micelles
65c2micB_



not modelled 7.0 12
PDB header:membrane protein
Chain: B: PDB Molecule:tumor necrosis factor receptor superfamily member 16;
PDBTitle: nmr structure of p75 transmembrane domain in dpc micelles
66c2d5nB_



not modelled 6.6 18
PDB header:hydrolase, oxidoreductase
Chain: B: PDB Molecule:riboflavin biosynthesis protein ribd;
PDBTitle: crystal structure of a bifunctional deaminase and reductase2 involved in riboflavin biosynthesis
67c2ndjA_



not modelled 6.3 10
PDB header:membrane protein
Chain: A: PDB Molecule:potassium voltage-gated channel subfamily e member 3;
PDBTitle: structural basis for kcne3 and estrogen modulation of the kcnq12 channel
68c2m7eA_



not modelled 6.2 18
PDB header:calmodulin-binding protein
Chain: A: PDB Molecule:calcium-transporting atpase 2, plasma membrane-type;
PDBTitle: solution structure of the calmodulin-binding domain of plant calcium-2 atpase aca2
69c3wg7T_



not modelled 6.1 27
PDB header:oxidoreductase
Chain: T: PDB Molecule:cytochrome c oxidase subunit 6a2, mitochondrial;
PDBTitle: a 1.9 angstrom radiation damage free x-ray structure of large (420kda)2 protein by femtosecond crystallography
70d1v54g_



not modelled 6.1 27
Fold:Single transmembrane helix
Superfamily:Mitochondrial cytochrome c oxidase subunit VIa
Family:Mitochondrial cytochrome c oxidase subunit VIa
71c6f0gC_



not modelled 6.1 23
PDB header:chaperone
Chain: C: PDB Molecule:ip3;
PDBTitle: crystal structure asf1-ip3
72c6f0gD_



not modelled 6.1 23
PDB header:chaperone
Chain: D: PDB Molecule:ip3;
PDBTitle: crystal structure asf1-ip3
73c4uy87_



not modelled 6.0 75
PDB header:ribosome
Chain: 7: PDB Molecule:tryptophanase;
PDB Fragment:residues 7-85; PDBTitle: molecular basis for the ribosome functioning as a l-tryptophan sensor2 - cryo-em structure of a tnac stalled e.coli ribosome
74c6csxA_



not modelled 5.9 8
PDB header:transport protein
Chain: A: PDB Molecule:multidrug efflux pump subunit acrb;
PDBTitle: single particles cryo-em structure of acrb d407a associated with lipid2 bilayer at 3.0 angstrom
75c5z62G_



not modelled 5.8 36
PDB header:electron transport
Chain: G: PDB Molecule:cytochrome c oxidase subunit 6a1, mitochondrial;
PDBTitle: structure of human cytochrome c oxidase
76c6eznH_



not modelled 5.8 12
PDB header:membrane protein
Chain: H: PDB Molecule:dolichyl-diphosphooligosaccharide--protein
PDBTitle: cryo-em structure of the yeast oligosaccharyltransferase (ost) complex
77c2l9uA_



not modelled 5.8 13
PDB header:membrane protein
Chain: A: PDB Molecule:receptor tyrosine-protein kinase erbb-3;
PDBTitle: spatial structure of dimeric erbb3 transmembrane domain
78c2l9uB_



not modelled 5.8 13
PDB header:membrane protein
Chain: B: PDB Molecule:receptor tyrosine-protein kinase erbb-3;
PDBTitle: spatial structure of dimeric erbb3 transmembrane domain
79c4k1cA_



not modelled 5.7 13
PDB header:membrane protein/metal transport
Chain: A: PDB Molecule:vacuolar calcium ion transporter;
PDBTitle: vcx1 calcium/proton exchanger
80c2zxeA_



not modelled 5.6 16
PDB header:hydrolase/transport protein
Chain: A: PDB Molecule:na, k-atpase alpha subunit;
PDBTitle: crystal structure of the sodium - potassium pump in the e2.2k+.pi2 state
81c5levA_



not modelled 5.5 11
PDB header:transferase
Chain: A: PDB Molecule:udp-n-acetylglucosamine--dolichyl-phosphate n-
PDBTitle: crystal structure of human udp-n-acetylglucosamine-dolichyl-phosphate2 n-acetylglucosaminephosphotransferase (dpagt1) (v264g mutant)
82c4heaJ_



not modelled 5.5 10
PDB header:oxidoreductase
Chain: J: PDB Molecule:nadh-quinone oxidoreductase subunit 10;
PDBTitle: crystal structure of the entire respiratory complex i from thermus2 thermophilus
83c3fh6F_



not modelled 5.4 12
PDB header:transport protein
Chain: F: PDB Molecule:maltose transport system permease protein malf;
PDBTitle: crystal structure of the resting state maltose transporter from e.2 coli
84d1co4a_



not modelled 5.2 50
Fold:Zinc domain conserved in yeast copper-regulated transcription factors
Superfamily:Zinc domain conserved in yeast copper-regulated transcription factors
Family:Zinc domain conserved in yeast copper-regulated transcription factors
85c5i20E_



not modelled 5.2 6
PDB header:membrane protein
Chain: E: PDB Molecule:uncharacterized protein;
PDBTitle: crystal structure of protein
86c6an7C_



not modelled 5.1 9
PDB header:transport protein
Chain: C: PDB Molecule:transport permease protein;
PDBTitle: crystal structure of o-antigen polysaccharide abc-transporter
87c3ux4C_



not modelled 5.1 12
PDB header:transport protein
Chain: C: PDB Molecule:acid-activated urea channel;
PDBTitle: crystal structure of the urea channel from the human gastric pathogen2 helicobacter pylori

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Transmembrane helix prediction 

Transmembrane helices have been predicted in your sequence to adopt the topology shown below