Phyre Home Retrieve Phyre Job Id
Emailmdejesus@rockefeller.edu
DescriptionRVBD0528_(-)_618308_619897
DateFri Jul 26 01:50:07 BST 2019
Unique Job IDeccb70fd4daa25c8
SequenceMWRSLTSMGT ... Download FASTA
Job Typenormal
Job Expiry

Summary 

Top model
Image coloured by rainbow N → C terminus
Model dimensions (Å):X:27.208 Y:35.166 Z:16.829
Model (left) based on template d1y5ic1
Top template information
Fold:Heme-binding four-helical bundle
Superfamily:Respiratory nitrate reductase 1 gamma chain
Family:Respiratory nitrate reductase 1 gamma chain
Confidence and coverage
Confidence: 68.9% Coverage: 5%
24 residues ( 5% of your sequence) have been modelled with 68.9% confidence by the single highest scoring template.
You may wish to submit your sequence to Phyrealarm. This will automatically scan your sequence every week for new potential templates as they appear in the Phyre2 library.
Please note: You must be registered and logged in to use Phyrealarm.
3D viewing
Interactive 3D view in JSmol
For other options to view your downloaded structure offline see the FAQ

Sequence analysis 

Download FASTA version

Secondary structure and disorder prediction [Show] 

Domain analysis [Show] 

Detailed template information [Hide] 

 

#
Template Alignment Coverage3D Model Confidence
% i.d. Template Information
1d1y5ic1



68.9 25
Fold:Heme-binding four-helical bundle
Superfamily:Respiratory nitrate reductase 1 gamma chain
Family:Respiratory nitrate reductase 1 gamma chain
2c5lm4A_



63.7 19
PDB header:transport protein
Chain: A: PDB Molecule:excitatory amino acid transporter 1,neutral amino acid
PDBTitle: structure of the thermostalilized eaat1 cryst-ii mutant in complex2 with l-asp and the allosteric inhibitor ucph101
3d1wjwa_



42.0 19
Fold:TBP-like
Superfamily:Phosphoglucomutase, C-terminal domain
Family:Phosphoglucomutase, C-terminal domain
4c6oceB_



28.2 15
PDB header:transport protein
Chain: B: PDB Molecule:stress-gated cation channel 1.2;
PDBTitle: structure of the rice hyperosmolality-gated ion channel osca1.2
5c2k21A_



18.0 25
PDB header:membrane protein
Chain: A: PDB Molecule:potassium voltage-gated channel subfamily e
PDBTitle: nmr structure of human kcne1 in lmpg micelles at ph 6.0 and2 40 degree c
6c2ndjA_



15.8 17
PDB header:membrane protein
Chain: A: PDB Molecule:potassium voltage-gated channel subfamily e member 3;
PDBTitle: structural basis for kcne3 and estrogen modulation of the kcnq12 channel
7c2k9yA_



15.6 27
PDB header:transferase
Chain: A: PDB Molecule:ephrin type-a receptor 2;
PDBTitle: epha2 dimeric structure in the lipidic bicelle at ph 5.0
8c2k9yB_



15.6 27
PDB header:transferase
Chain: B: PDB Molecule:ephrin type-a receptor 2;
PDBTitle: epha2 dimeric structure in the lipidic bicelle at ph 5.0
9c1f20A_



15.3 12
PDB header:oxidoreductase
Chain: A: PDB Molecule:nitric-oxide synthase;
PDBTitle: crystal structure of rat neuronal nitric-oxide synthase fad/nadp+2 domain at 1.9a resolution.
10c1bhbA_



12.4 26
PDB header:photoreceptor
Chain: A: PDB Molecule:bacteriorhodopsin;
PDBTitle: three-dimensional structure of (1-71) bacterioopsin2 solubilized in methanol-chloroform and sds micelles3 determined by 15n-1h heteronuclear nmr spectroscopy
11c5ochF_



11.8 22
PDB header:hydrolase
Chain: F: PDB Molecule:atp-binding cassette sub-family b member 8, mitochondrial;
PDBTitle: the crystal structure of human abcb8 in an outward-facing state
12c2m0qA_



11.5 21
PDB header:membrane protein
Chain: A: PDB Molecule:potassium voltage-gated channel subfamily e member 2;
PDBTitle: solution nmr analysis of intact kcne2 in detergent micelles2 demonstrate a straight transmembrane helix
13c6nd1E_



11.3 13
PDB header:protein transport
Chain: E: PDB Molecule:translocation protein sec66;
PDBTitle: cryoem structure of the sec complex from yeast
14c5ws4A_



11.0 15
PDB header:membrane protein
Chain: A: PDB Molecule:macrolide export atp-binding/permease protein macb;
PDBTitle: crystal structure of tripartite-type abc transporter macb from2 acinetobacter baumannii
15c2kluA_



10.4 32
PDB header:immune system, membrane protein
Chain: A: PDB Molecule:t-cell surface glycoprotein cd4;
PDBTitle: nmr structure of the transmembrane and cytoplasmic domains2 of human cd4
16c2ks1B_



9.9 28
PDB header:transferase
Chain: B: PDB Molecule:epidermal growth factor receptor;
PDBTitle: heterodimeric association of transmembrane domains of erbb1 and erbb22 receptors enabling kinase activation
17c5a43B_



9.5 33
PDB header:transport protein
Chain: B: PDB Molecule:putative fluoride ion transporter crcb;
PDBTitle: crystal structure of a dual topology fluoride ion channel.
18c2m1jA_



9.4 23
PDB header:unknown function
Chain: A: PDB Molecule:prion-like protein doppel;
PDBTitle: ovine doppel signal peptide (1-30)
19c5gasN_



8.8 14
PDB header:hydrolase
Chain: N: PDB Molecule:archaeal/vacuolar-type h+-atpase subunit i;
PDBTitle: thermus thermophilus v/a-atpase, conformation 2
20c6adqP_



8.3 30
PDB header:electron transport
Chain: P: PDB Molecule:prokaryotic respiratory supercomplex associate factor 1
PDBTitle: respiratory complex ciii2civ2sod2 from mycobacterium smegmatis
21c6gctA_



not modelled 8.1 21
PDB header:membrane protein
Chain: A: PDB Molecule:neutral amino acid transporter b(0);
PDBTitle: cryo-em structure of the human neutral amino acid transporter asct2
22c2m20B_



not modelled 8.0 28
PDB header:signaling protein
Chain: B: PDB Molecule:epidermal growth factor receptor;
PDBTitle: egfr transmembrane - juxtamembrane (tm-jm) segment in bicelles: md2 guided nmr refined structure.
23c3j1rP_



not modelled 7.9 44
PDB header:cell adhesion, structural protein
Chain: P: PDB Molecule:archaeal adhesion filament core;
PDBTitle: filaments from ignicoccus hospitalis show diversity of packing in2 proteins containing n-terminal type iv pilin helices
24c3j1rE_



not modelled 7.9 44
PDB header:cell adhesion, structural protein
Chain: E: PDB Molecule:archaeal adhesion filament core;
PDBTitle: filaments from ignicoccus hospitalis show diversity of packing in2 proteins containing n-terminal type iv pilin helices
25c3j1rF_



not modelled 7.9 44
PDB header:cell adhesion, structural protein
Chain: F: PDB Molecule:archaeal adhesion filament core;
PDBTitle: filaments from ignicoccus hospitalis show diversity of packing in2 proteins containing n-terminal type iv pilin helices
26c3j1rB_



not modelled 7.9 44
PDB header:cell adhesion, structural protein
Chain: B: PDB Molecule:archaeal adhesion filament core;
PDBTitle: filaments from ignicoccus hospitalis show diversity of packing in2 proteins containing n-terminal type iv pilin helices
27c3j1rS_



not modelled 7.9 44
PDB header:cell adhesion, structural protein
Chain: S: PDB Molecule:archaeal adhesion filament core;
PDBTitle: filaments from ignicoccus hospitalis show diversity of packing in2 proteins containing n-terminal type iv pilin helices
28c3j1rO_



not modelled 7.9 44
PDB header:cell adhesion, structural protein
Chain: O: PDB Molecule:archaeal adhesion filament core;
PDBTitle: filaments from ignicoccus hospitalis show diversity of packing in2 proteins containing n-terminal type iv pilin helices
29c3j1rM_



not modelled 7.9 44
PDB header:cell adhesion, structural protein
Chain: M: PDB Molecule:archaeal adhesion filament core;
PDBTitle: filaments from ignicoccus hospitalis show diversity of packing in2 proteins containing n-terminal type iv pilin helices
30c3j1rR_



not modelled 7.9 44
PDB header:cell adhesion, structural protein
Chain: R: PDB Molecule:archaeal adhesion filament core;
PDBTitle: filaments from ignicoccus hospitalis show diversity of packing in2 proteins containing n-terminal type iv pilin helices
31c3j1rH_



not modelled 7.9 44
PDB header:cell adhesion, structural protein
Chain: H: PDB Molecule:archaeal adhesion filament core;
PDBTitle: filaments from ignicoccus hospitalis show diversity of packing in2 proteins containing n-terminal type iv pilin helices
32c3j1rI_



not modelled 7.9 44
PDB header:cell adhesion, structural protein
Chain: I: PDB Molecule:archaeal adhesion filament core;
PDBTitle: filaments from ignicoccus hospitalis show diversity of packing in2 proteins containing n-terminal type iv pilin helices
33c3j1rG_



not modelled 7.9 44
PDB header:cell adhesion, structural protein
Chain: G: PDB Molecule:archaeal adhesion filament core;
PDBTitle: filaments from ignicoccus hospitalis show diversity of packing in2 proteins containing n-terminal type iv pilin helices
34c3j1rL_



not modelled 7.9 44
PDB header:cell adhesion, structural protein
Chain: L: PDB Molecule:archaeal adhesion filament core;
PDBTitle: filaments from ignicoccus hospitalis show diversity of packing in2 proteins containing n-terminal type iv pilin helices
35c3j1rN_



not modelled 7.9 44
PDB header:cell adhesion, structural protein
Chain: N: PDB Molecule:archaeal adhesion filament core;
PDBTitle: filaments from ignicoccus hospitalis show diversity of packing in2 proteins containing n-terminal type iv pilin helices
36c3j1rC_



not modelled 7.9 44
PDB header:cell adhesion, structural protein
Chain: C: PDB Molecule:archaeal adhesion filament core;
PDBTitle: filaments from ignicoccus hospitalis show diversity of packing in2 proteins containing n-terminal type iv pilin helices
37c3j1rQ_



not modelled 7.9 44
PDB header:cell adhesion, structural protein
Chain: Q: PDB Molecule:archaeal adhesion filament core;
PDBTitle: filaments from ignicoccus hospitalis show diversity of packing in2 proteins containing n-terminal type iv pilin helices
38c3j1rU_



not modelled 7.9 44
PDB header:cell adhesion, structural protein
Chain: U: PDB Molecule:archaeal adhesion filament core;
PDBTitle: filaments from ignicoccus hospitalis show diversity of packing in2 proteins containing n-terminal type iv pilin helices
39c3j1rA_



not modelled 7.9 44
PDB header:cell adhesion, structural protein
Chain: A: PDB Molecule:archaeal adhesion filament core;
PDBTitle: filaments from ignicoccus hospitalis show diversity of packing in2 proteins containing n-terminal type iv pilin helices
40c3j1rD_



not modelled 7.9 44
PDB header:cell adhesion, structural protein
Chain: D: PDB Molecule:archaeal adhesion filament core;
PDBTitle: filaments from ignicoccus hospitalis show diversity of packing in2 proteins containing n-terminal type iv pilin helices
41c3j1rJ_



not modelled 7.9 44
PDB header:cell adhesion, structural protein
Chain: J: PDB Molecule:archaeal adhesion filament core;
PDBTitle: filaments from ignicoccus hospitalis show diversity of packing in2 proteins containing n-terminal type iv pilin helices
42c3j1rK_



not modelled 7.9 44
PDB header:cell adhesion, structural protein
Chain: K: PDB Molecule:archaeal adhesion filament core;
PDBTitle: filaments from ignicoccus hospitalis show diversity of packing in2 proteins containing n-terminal type iv pilin helices
43c3j1rT_



not modelled 7.9 44
PDB header:cell adhesion, structural protein
Chain: T: PDB Molecule:archaeal adhesion filament core;
PDBTitle: filaments from ignicoccus hospitalis show diversity of packing in2 proteins containing n-terminal type iv pilin helices
44d1xrda1



not modelled 7.7 27
Fold:Light-harvesting complex subunits
Superfamily:Light-harvesting complex subunits
Family:Light-harvesting complex subunits
45c1xrdA_



not modelled 7.7 27
PDB header:membrane protein
Chain: A: PDB Molecule:light-harvesting protein b-880, alpha chain;
PDBTitle: light-harvesting complex 1 alfa subunit from wild-type2 rhodospirillum rubrum
46d1qhda2



not modelled 7.5 39
Fold:Viral protein domain
Superfamily:Viral protein domain
Family:Top domain of virus capsid protein
47c1afoB_



not modelled 7.4 22
PDB header:integral membrane protein
Chain: B: PDB Molecule:glycophorin a;
PDBTitle: dimeric transmembrane domain of human glycophorin a, nmr,2 20 structures
48c2mpnB_



not modelled 7.3 15
PDB header:membrane protein
Chain: B: PDB Molecule:inner membrane protein ygap;
PDBTitle: 3d nmr structure of the transmembrane domain of the full-length inner2 membrane protein ygap from escherichia coli
49c2mpnA_



not modelled 7.3 15
PDB header:membrane protein
Chain: A: PDB Molecule:inner membrane protein ygap;
PDBTitle: 3d nmr structure of the transmembrane domain of the full-length inner2 membrane protein ygap from escherichia coli
50c6et5b_



not modelled 7.0 23
PDB header:photosynthesis
Chain: B: PDB Molecule:
PDBTitle: reaction centre light harvesting complex 1 from blc. virids
51c3wmmY_



not modelled 6.9 32
PDB header:photosynthesis
Chain: Y: PDB Molecule:lh1 alpha polypeptide;
PDBTitle: crystal structure of the lh1-rc complex from thermochromatium tepidum2 in c2 form
52c5mkkB_



not modelled 5.9 16
PDB header:transport protein
Chain: B: PDB Molecule:multidrug resistance abc transporter atp-binding and
PDBTitle: crystal structure of the heterodimeric abc transporter tmrab, a2 homolog of the antigen translocation complex tap
53c5eh4C_



not modelled 5.9 24
PDB header:membrane protein
Chain: C: PDB Molecule:glycophorin-a;
PDBTitle: crystal structure of the glycophorin a transmembrane dimer in lipidic2 cubic phase
54c5eh4A_



not modelled 5.9 24
PDB header:membrane protein
Chain: A: PDB Molecule:glycophorin-a;
PDBTitle: crystal structure of the glycophorin a transmembrane dimer in lipidic2 cubic phase
55c5eh4B_



not modelled 5.9 24
PDB header:membrane protein
Chain: B: PDB Molecule:glycophorin-a;
PDBTitle: crystal structure of the glycophorin a transmembrane dimer in lipidic2 cubic phase
56c5eh4D_



not modelled 5.9 24
PDB header:membrane protein
Chain: D: PDB Molecule:glycophorin-a;
PDBTitle: crystal structure of the glycophorin a transmembrane dimer in lipidic2 cubic phase
57c5eh6A_



not modelled 5.9 24
PDB header:membrane protein
Chain: A: PDB Molecule:glycophorin-a;
PDBTitle: crystal structure of the glycophorin a transmembrane monomer in2 lipidic cubic phase
58c2mc0A_



not modelled 5.7 27
PDB header:transcription activator/antibiotic
Chain: A: PDB Molecule:hth-type transcriptional activator tipa;
PDBTitle: structural basis of a thiopeptide antibiotic multidrug resistance2 system from streptomyces lividans:nosiheptide in complex with tipas
59c2na9A_



not modelled 5.7 18
PDB header:signaling protein
Chain: A: PDB Molecule:cytokine receptor common subunit beta;
PDBTitle: transmembrane structure of the p441a mutant of the cytokine receptor2 common subunit beta
60c2na8A_



not modelled 5.7 18
PDB header:membrane protein
Chain: A: PDB Molecule:cytokine receptor common subunit beta;
PDBTitle: transmembrane structure of the cytokine receptor common subunit beta
61c3wvfA_



not modelled 5.6 15
PDB header:chaperone
Chain: A: PDB Molecule:membrane protein insertase yidc;
PDBTitle: crystal structure of yidc from escherichia coli
62c5sv1Y_



not modelled 5.5 30
PDB header:transport protein
Chain: Y: PDB Molecule:biopolymer transport protein exbd;
PDBTitle: structure of the exbb/exbd complex from e. coli at ph 4.5
63c3iykA_



not modelled 5.5 43
PDB header:virus
Chain: A: PDB Molecule:vp5;
PDBTitle: bluetongue virus structure reveals a sialic acid binding domain,2 amphipathic helices and a central coiled coil in the outer capsid3 proteins
64c2n2aA_



not modelled 5.4 21
PDB header:membrane protein
Chain: A: PDB Molecule:receptor tyrosine-protein kinase erbb-2;
PDBTitle: spatial structure of her2/erbb2 dimeric transmembrane domain in the2 presence of cytoplasmic juxtamembrane domains
65c5sv1Z_



not modelled 5.4 30
PDB header:transport protein
Chain: Z: PDB Molecule:biopolymer transport protein exbd;
PDBTitle: structure of the exbb/exbd complex from e. coli at ph 4.5
66c5u1dA_



not modelled 5.3 15
PDB header:transport protein
Chain: A: PDB Molecule:antigen peptide transporter 1;
PDBTitle: cryo-em structure of the human tap atp-binding cassette transporter
67c6f2wA_



not modelled 5.3 4
PDB header:transport protein
Chain: A: PDB Molecule:putative amino acid/polyamine transport protein;
PDBTitle: bacterial asc transporter crystal structure in open to in conformation
68c4pe5A_



not modelled 5.2 20
PDB header:transport protein
Chain: A: PDB Molecule:glutamate receptor ionotropic, nmda 1;
PDBTitle: crystal structure of glun1a/glun2b nmda receptor ion channel

Binding site prediction 

Due to computational demand, binding site predictions are not run for batch jobs

If you want to predict binding sites, please manually submit your model of choice to 3DLigandSite

Transmembrane helix prediction 

Transmembrane helices have been predicted in your sequence to adopt the topology shown below