Phyre Home Retrieve Phyre Job Id
Emailmdejesus@rockefeller.edu
DescriptionRVBD0530Ac_(RVBD0530Ac)_622124_622285
DateFri Jul 26 01:50:08 BST 2019
Unique Job ID0145789096882a76
SequenceVLYLLLVLIL ... Download FASTA
Job Typenormal
Job Expiry

Summary 

Top model
Image coloured by rainbow N → C terminus
Model dimensions (Å):X:18.225 Y:28.934 Z:18.916
Model (left) based on template c2mi2A_
Top template information
PDB header:transport protein
Chain: A: PDB Molecule:sec-independent protein translocase protein tatb;
PDBTitle: solution structure of the e. coli tatb protein in dpc micelles
Confidence and coverage
Confidence: 39.7% Coverage: 47%
25 residues ( 47% of your sequence) have been modelled with 39.7% confidence by the single highest scoring template.
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3D viewing
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Sequence analysis 

Download FASTA version

Secondary structure and disorder prediction [Show] 

Domain analysis [Show] 

Detailed template information [Hide] 

 

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Template Alignment Coverage3D Model Confidence
% i.d. Template Information
1c2mi2A_



39.7 36
PDB header:transport protein
Chain: A: PDB Molecule:sec-independent protein translocase protein tatb;
PDBTitle: solution structure of the e. coli tatb protein in dpc micelles
2c4ntfA_



23.4 24
PDB header:lyase
Chain: A: PDB Molecule:leukotriene c4 synthase;
PDBTitle: mus musculus ltc4 synthase in s-hexyl-gsh complex form
3c2k1aA_



23.0 32
PDB header:cell adhesion
Chain: A: PDB Molecule:integrin alpha-iib;
PDBTitle: bicelle-embedded integrin alpha(iib) transmembrane segment
4c2kncA_



22.5 29
PDB header:cell adhesion
Chain: A: PDB Molecule:integrin alpha-iib;
PDBTitle: platelet integrin alfaiib-beta3 transmembrane-cytoplasmic2 heterocomplex
5c3ktbD_



19.4 36
PDB header:transcription regulator
Chain: D: PDB Molecule:arsenical resistance operon trans-acting repressor;
PDBTitle: crystal structure of arsenical resistance operon trans-acting2 repressor from bacteroides vulgatus atcc 8482
6c3tj0B_



16.9 16
PDB header:rna binding protein
Chain: B: PDB Molecule:nucleoprotein;
PDBTitle: crystal structure of influenza b virus nucleoprotein
7c2l16A_



16.2 40
PDB header:protein transport
Chain: A: PDB Molecule:sec-independent protein translocase protein tatad;
PDBTitle: solution structure of bacillus subtilits tatad protein in dpc micelles
8d2q7ra1



14.9 17
Fold:MAPEG domain-like
Superfamily:MAPEG domain-like
Family:MAPEG domain
9c3hkkA_



13.2 26
PDB header:lyase
Chain: A: PDB Molecule:leukotriene c4 synthase;
PDBTitle: structure of human leukotriene c4 synthase in complex with glutathione2 sulfonate
10c2lzsE_



12.8 24
PDB header:protein transport
Chain: E: PDB Molecule:sec-independent protein translocase protein tata;
PDBTitle: tata oligomer
11c2uuiA_



11.4 30
PDB header:lyase
Chain: A: PDB Molecule:leukotriene c4 synthase;
PDBTitle: crystal structure of human leukotriene c4 synthase
12c2uuhA_



11.1 26
PDB header:lyase
Chain: A: PDB Molecule:leukotriene c4 synthase;
PDBTitle: crystal structure of human leukotriene c4 synthase in2 complex with substrate glutathione
13c3j00Z_



11.0 35
PDB header:ribosome/ribosomal protein
Chain: Z: PDB Molecule:cell division protein ftsq;
PDBTitle: structure of the ribosome-secye complex in the membrane environment
14c3leoA_



10.3 26
PDB header:lyase
Chain: A: PDB Molecule:leukotriene c4 synthase;
PDBTitle: structure of human leukotriene c4 synthase mutant r31q in complex with2 glutathione
15c3arcl_



8.8 70
PDB header:electron transport, photosynthesis
Chain: L: PDB Molecule:photosystem ii reaction center protein l;
PDBTitle: crystal structure of oxygen-evolving photosystem ii at 1.9 angstrom2 resolution
16c2pnoK_



8.4 28
PDB header:lyase
Chain: K: PDB Molecule:leukotriene c4 synthase;
PDBTitle: crystal structure of human leukotriene c4 synthase
17c2pnoF_



8.4 28
PDB header:lyase
Chain: F: PDB Molecule:leukotriene c4 synthase;
PDBTitle: crystal structure of human leukotriene c4 synthase
18c2pnoB_



8.4 28
PDB header:lyase
Chain: B: PDB Molecule:leukotriene c4 synthase;
PDBTitle: crystal structure of human leukotriene c4 synthase
19c2pnoA_



8.4 28
PDB header:lyase
Chain: A: PDB Molecule:leukotriene c4 synthase;
PDBTitle: crystal structure of human leukotriene c4 synthase
20c2pnoJ_



8.4 28
PDB header:lyase
Chain: J: PDB Molecule:leukotriene c4 synthase;
PDBTitle: crystal structure of human leukotriene c4 synthase
21c2pnoG_



not modelled 8.4 28
PDB header:lyase
Chain: G: PDB Molecule:leukotriene c4 synthase;
PDBTitle: crystal structure of human leukotriene c4 synthase
22c2pnoI_



not modelled 8.4 28
PDB header:lyase
Chain: I: PDB Molecule:leukotriene c4 synthase;
PDBTitle: crystal structure of human leukotriene c4 synthase
23c2pnoC_



not modelled 8.4 28
PDB header:lyase
Chain: C: PDB Molecule:leukotriene c4 synthase;
PDBTitle: crystal structure of human leukotriene c4 synthase
24c2pnoD_



not modelled 8.4 28
PDB header:lyase
Chain: D: PDB Molecule:leukotriene c4 synthase;
PDBTitle: crystal structure of human leukotriene c4 synthase
25c2pnoE_



not modelled 8.4 28
PDB header:lyase
Chain: E: PDB Molecule:leukotriene c4 synthase;
PDBTitle: crystal structure of human leukotriene c4 synthase
26c2pnoL_



not modelled 8.4 28
PDB header:lyase
Chain: L: PDB Molecule:leukotriene c4 synthase;
PDBTitle: crystal structure of human leukotriene c4 synthase
27d2uuia1



not modelled 8.4 28
Fold:MAPEG domain-like
Superfamily:MAPEG domain-like
Family:MAPEG domain
28c2pnoH_



not modelled 8.4 28
PDB header:lyase
Chain: H: PDB Molecule:leukotriene c4 synthase;
PDBTitle: crystal structure of human leukotriene c4 synthase
29c5nhuI_



not modelled 8.0 67
PDB header:hydrolase
Chain: I: PDB Molecule:agap008004-pa;
PDBTitle: human alpha thrombin complexed with anopheles gambiae ce52 anticoagulant
30c5wxkA_



not modelled 7.8 28
PDB header:transferase
Chain: A: PDB Molecule:earp;
PDBTitle: earp bound with domain i of ef-p
31c2zw3B_



not modelled 6.8 31
PDB header:cell adhesion
Chain: B: PDB Molecule:gap junction beta-2 protein;
PDBTitle: structure of the connexin-26 gap junction channel at 3.52 angstrom resolution
32c4lqlF_



not modelled 6.7 21
PDB header:isomerase
Chain: F: PDB Molecule:l-arabinose isomerase;
PDBTitle: crystal structure of l-arabinose isomerase from lactobacillus2 fermentum cgmcc2921
33c4pj0L_



not modelled 6.6 64
PDB header:oxidoreductase, electron transport
Chain: L: PDB Molecule:photosystem ii reaction center protein l;
PDBTitle: structure of t.elongatus photosystem ii, rows of dimers crystal2 packing
34c4pj0l_



not modelled 6.6 64
PDB header:oxidoreductase, electron transport
Chain: L: PDB Molecule:photosystem ii reaction center protein l;
PDBTitle: structure of t.elongatus photosystem ii, rows of dimers crystal2 packing
35d2e74f1



not modelled 6.6 40
Fold:Single transmembrane helix
Superfamily:PetM subunit of the cytochrome b6f complex
Family:PetM subunit of the cytochrome b6f complex
36c4tnhL_



not modelled 6.3 64
PDB header:electron transport,photosynthesis
Chain: L: PDB Molecule:photosystem ii reaction center protein l;
PDBTitle: rt xfel structure of photosystem ii in the dark state at 4.9 a2 resolution
37c3wu2L_



not modelled 6.3 64
PDB header:electron transport, photosynthesis
Chain: L: PDB Molecule:photosystem ii reaction center protein l;
PDBTitle: crystal structure analysis of photosystem ii complex
38c4tnjL_



not modelled 6.3 64
PDB header:electron transport,photosynthesis
Chain: L: PDB Molecule:photosystem ii reaction center protein l;
PDBTitle: rt xfel structure of photosystem ii 500 ms after the 2nd illumination2 (2f) at 4.5 a resolution
39c4tnkL_



not modelled 6.3 64
PDB header:electron transport,photosynthesis
Chain: L: PDB Molecule:photosystem ii reaction center protein l;
PDBTitle: rt xfel structure of photosystem ii 250 microsec after the third2 illumination at 5.2 a resolution
40c4tniL_



not modelled 6.3 64
PDB header:electron transport,photosynthesis
Chain: L: PDB Molecule:photosystem ii reaction center protein l;
PDBTitle: rt xfel structure of photosystem ii 500 ms after the third2 illumination at 4.6 a resolution
41c4fbyL_



not modelled 6.3 64
PDB header:photosynthesis
Chain: L: PDB Molecule:photosystem ii reaction center protein l;
PDBTitle: fs x-ray diffraction of photosystem ii
42c4tnhl_



not modelled 6.3 64
PDB header:electron transport,photosynthesis
Chain: L: PDB Molecule:photosystem ii reaction center protein l;
PDBTitle: rt xfel structure of photosystem ii in the dark state at 4.9 a2 resolution
43d2axtl1



not modelled 6.3 64
Fold:Single transmembrane helix
Superfamily:Photosystem II reaction center protein L, PsbL
Family:PsbL-like
44c4fbyd_



not modelled 6.3 64
PDB header:photosynthesis
Chain: D: PDB Molecule:photosystem ii d2 protein;
PDBTitle: fs x-ray diffraction of photosystem ii
45c3prrL_



not modelled 6.3 64
PDB header:photosynthesis
Chain: L: PDB Molecule:photosystem ii reaction center protein l;
PDBTitle: crystal structure of cyanobacterial photosystem ii in complex with2 terbutryn (part 2 of 2). this file contains second monomer of psii3 dimer
46c3a0bL_



not modelled 6.3 64
PDB header:electron transport
Chain: L: PDB Molecule:photosystem ii reaction center protein l;
PDBTitle: crystal structure of br-substituted photosystem ii complex
47c3wu2l_



not modelled 6.3 64
PDB header:electron transport, photosynthesis
Chain: L: PDB Molecule:photosystem ii reaction center protein l;
PDBTitle: crystal structure analysis of photosystem ii complex
48c4tnil_



not modelled 6.3 64
PDB header:electron transport,photosynthesis
Chain: L: PDB Molecule:photosystem ii reaction center protein l;
PDBTitle: rt xfel structure of photosystem ii 500 ms after the third2 illumination at 4.6 a resolution
49c4tnjl_



not modelled 6.3 64
PDB header:electron transport,photosynthesis
Chain: L: PDB Molecule:photosystem ii reaction center protein l;
PDBTitle: rt xfel structure of photosystem ii 500 ms after the 2nd illumination2 (2f) at 4.5 a resolution
50c4ixrl_



not modelled 6.3 64
PDB header:photosynthesis
Chain: L: PDB Molecule:photosystem ii reaction center protein l;
PDBTitle: rt fs x-ray diffraction of photosystem ii, first illuminated state
51c4il6L_



not modelled 6.3 64
PDB header:electron transport
Chain: L: PDB Molecule:photosystem ii reaction center protein l;
PDBTitle: structure of sr-substituted photosystem ii
52c4ub8L_



not modelled 6.3 64
PDB header:electron transport, photosynthesis
Chain: L: PDB Molecule:photosystem ii reaction center protein l;
PDBTitle: native structure of photosystem ii (dataset-2) by a femtosecond x-ray2 laser
53c4il6l_



not modelled 6.3 64
PDB header:electron transport
Chain: L: PDB Molecule:photosystem ii reaction center protein l;
PDBTitle: structure of sr-substituted photosystem ii
54c4ub8l_



not modelled 6.3 64
PDB header:electron transport, photosynthesis
Chain: L: PDB Molecule:photosystem ii reaction center protein l;
PDBTitle: native structure of photosystem ii (dataset-2) by a femtosecond x-ray2 laser
55c4ixql_



not modelled 6.3 64
PDB header:photosynthesis
Chain: L: PDB Molecule:photosystem ii reaction center protein l;
PDBTitle: rt fs x-ray diffraction of photosystem ii, dark state
56c4tnkl_



not modelled 6.3 64
PDB header:electron transport,photosynthesis
Chain: L: PDB Molecule:photosystem ii reaction center protein l;
PDBTitle: rt xfel structure of photosystem ii 250 microsec after the third2 illumination at 5.2 a resolution
57c4rvyl_



not modelled 6.3 64
PDB header:oxidoreductase
Chain: L: PDB Molecule:photosystem ii reaction center protein l;
PDBTitle: serial time resolved crystallography of photosystem ii using a2 femtosecond x-ray laser. the s state after two flashes (s3)
58c5e7cl_



not modelled 6.3 64
PDB header:photosynthesis
Chain: L: PDB Molecule:photosystem ii reaction center protein l;
PDBTitle: macromolecular diffractive imaging using imperfect crystals - bragg2 data
59c4rvyL_



not modelled 6.3 64
PDB header:oxidoreductase
Chain: L: PDB Molecule:photosystem ii reaction center protein l;
PDBTitle: serial time resolved crystallography of photosystem ii using a2 femtosecond x-ray laser. the s state after two flashes (s3)
60c4ub6l_



not modelled 6.3 64
PDB header:electron transport, photosynthesis
Chain: L: PDB Molecule:photosystem ii reaction center protein l;
PDBTitle: native structure of photosystem ii (dataset-1) by a femtosecond x-ray2 laser
61c5e7cL_



not modelled 6.3 64
PDB header:photosynthesis
Chain: L: PDB Molecule:photosystem ii reaction center protein l;
PDBTitle: macromolecular diffractive imaging using imperfect crystals - bragg2 data
62c4ub6L_



not modelled 6.3 64
PDB header:electron transport, photosynthesis
Chain: L: PDB Molecule:photosystem ii reaction center protein l;
PDBTitle: native structure of photosystem ii (dataset-1) by a femtosecond x-ray2 laser
63c1s5lL_



not modelled 6.3 64
PDB header:photosynthesis
Chain: L: PDB Molecule:photosystem ii reaction center l protein;
PDBTitle: architecture of the photosynthetic oxygen evolving center
64c3a0bl_



not modelled 6.3 64
PDB header:electron transport
Chain: L: PDB Molecule:photosystem ii reaction center protein l;
PDBTitle: crystal structure of br-substituted photosystem ii complex
65c3a0hl_



not modelled 6.3 64
PDB header:electron transport
Chain: L: PDB Molecule:photosystem ii reaction center protein l;
PDBTitle: crystal structure of i-substituted photosystem ii complex
66c3bz1L_



not modelled 6.3 64
PDB header:electron transport
Chain: L: PDB Molecule:photosystem ii reaction center protein l;
PDBTitle: crystal structure of cyanobacterial photosystem ii (part 1 of 2). this2 file contains first monomer of psii dimer
67c4ixqL_



not modelled 6.3 64
PDB header:photosynthesis
Chain: L: PDB Molecule:photosystem ii reaction center protein l;
PDBTitle: rt fs x-ray diffraction of photosystem ii, dark state
68c3a0hL_



not modelled 6.3 64
PDB header:electron transport
Chain: L: PDB Molecule:photosystem ii reaction center protein l;
PDBTitle: crystal structure of i-substituted photosystem ii complex
69c2axtL_



not modelled 6.3 64
PDB header:electron transport
Chain: L: PDB Molecule:photosystem ii reaction center l protein;
PDBTitle: crystal structure of photosystem ii from thermosynechococcus elongatus
70c4ixrL_



not modelled 6.3 64
PDB header:photosynthesis
Chain: L: PDB Molecule:photosystem ii reaction center protein l;
PDBTitle: rt fs x-ray diffraction of photosystem ii, first illuminated state
71c3kziL_



not modelled 6.3 64
PDB header:electron transport
Chain: L: PDB Molecule:photosystem ii reaction center protein l;
PDBTitle: crystal structure of monomeric form of cyanobacterial photosystem ii
72c3arcL_



not modelled 6.3 64
PDB header:electron transport, photosynthesis
Chain: L: PDB Molecule:photosystem ii reaction center protein l;
PDBTitle: crystal structure of oxygen-evolving photosystem ii at 1.9 angstrom2 resolution
73c2axtl_



not modelled 6.3 64
PDB header:electron transport
Chain: L: PDB Molecule:photosystem ii reaction center l protein;
PDBTitle: crystal structure of photosystem ii from thermosynechococcus elongatus
74c3prqL_



not modelled 6.3 64
PDB header:photosynthesis
Chain: L: PDB Molecule:photosystem ii reaction center protein l;
PDBTitle: crystal structure of cyanobacterial photosystem ii in complex with2 terbutryn (part 1 of 2). this file contains first monomer of psii3 dimer
75c1s5ll_



not modelled 6.3 64
PDB header:photosynthesis
Chain: L: PDB Molecule:photosystem ii reaction center l protein;
PDBTitle: architecture of the photosynthetic oxygen evolving center
76c3bz2L_



not modelled 6.3 64
PDB header:electron transport
Chain: L: PDB Molecule:photosystem ii reaction center protein l;
PDBTitle: crystal structure of cyanobacterial photosystem ii (part 2 of 2). this2 file contains second monomer of psii dimer
77c4ogqF_



not modelled 5.9 67
PDB header:electron transport
Chain: F: PDB Molecule:cytochrome b6-f complex subunit 7;
PDBTitle: internal lipid architecture of the hetero-oligomeric cytochrome b6f2 complex
78c2zt9F_



not modelled 5.9 67
PDB header:photosynthesis
Chain: F: PDB Molecule:cytochrome b6-f complex subunit 7;
PDBTitle: crystal structure of the cytochrome b6f complex from nostoc sp. pcc2 7120
79c4h44F_



not modelled 5.9 67
PDB header:photosynthesis
Chain: F: PDB Molecule:cytochrome b6-f complex subunit 7;
PDBTitle: 2.70 a cytochrome b6f complex structure from nostoc pcc 7120
80c3pcvA_



not modelled 5.7 28
PDB header:lyase
Chain: A: PDB Molecule:leukotriene c4 synthase;
PDBTitle: crystal structure analysis of human leukotriene c4 synthase at 1.92 angstrom resolution
81c3idwA_



not modelled 5.5 50
PDB header:endocytosis
Chain: A: PDB Molecule:actin cytoskeleton-regulatory complex protein sla1;
PDBTitle: crystal structure of sla1 homology domain 2
82c3b29A_



not modelled 5.5 28
PDB header:lyase
Chain: A: PDB Molecule:leukotriene c4 synthase;
PDBTitle: human leukotriene c4 synthase in complex with dodecyl-beta-d-2 selenomaltoside
83c3fxeA_



not modelled 5.2 54
PDB header:unknown function
Chain: A: PDB Molecule:protein icmq;
PDBTitle: crystal structure of interacting domains of icmr and icmq (seleno-2 derivative)
84c5nhuJ_



not modelled 5.2 67
PDB header:hydrolase
Chain: J: PDB Molecule:agap008004-pa;
PDBTitle: human alpha thrombin complexed with anopheles gambiae ce52 anticoagulant

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Transmembrane helix prediction 

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