Phyre Home Retrieve Phyre Job Id
Emailmdejesus@rockefeller.edu
DescriptionRVBD0537c_(-)_628301_629734
DateFri Jul 26 01:50:09 BST 2019
Unique Job ID628e7adc6bc3ca5c
SequenceVGLSSDDTRR ... Download FASTA
Job Typenormal
Job Expiry

Summary 

Top model
Image coloured by rainbow N → C terminus
Model dimensions (Å):X:75.207 Y:39.342 Z:45.534
Model (left) based on template c1yewI_
Top template information
PDB header:oxidoreductase, membrane protein
Chain: I: PDB Molecule:particulate methane monooxygenase, b subunit;
PDBTitle: crystal structure of particulate methane monooxygenase
Confidence and coverage
Confidence: 83.9% Coverage: 16%
77 residues ( 16% of your sequence) have been modelled with 83.9% confidence by the single highest scoring template.
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Sequence analysis 

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Secondary structure and disorder prediction [Show] 

Domain analysis [Show] 

Detailed template information [Hide] 

 

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Template Alignment Coverage3D Model Confidence
% i.d. Template Information
1c1yewI_
83.9 19
PDB header:oxidoreductase, membrane protein
Chain: I: PDB Molecule:particulate methane monooxygenase, b subunit;
PDBTitle: crystal structure of particulate methane monooxygenase
2c3rfrI_
83.0 19
PDB header:oxidoreductase
Chain: I: PDB Molecule:pmob;
PDBTitle: crystal structure of particulate methane monooxygenase (pmmo) from2 methylocystis sp. strain m
3c3rgbA_
80.9 19
PDB header:oxidoreductase
Chain: A: PDB Molecule:methane monooxygenase subunit b2;
PDBTitle: crystal structure of particulate methane monooxygenase from2 methylococcus capsulatus (bath)
4c4uisB_
51.5 15
PDB header:hydrolase
Chain: B: PDB Molecule:gamma-secretase;
PDBTitle: the cryoem structure of human gamma-secretase complex
5c5a63D_
33.1 21
PDB header:hydrolase
Chain: D: PDB Molecule:gamma-secretase subunit pen-2;
PDBTitle: cryo-em structure of the human gamma-secretase complex at 3.4 angstrom2 resolution.
6c3w3fB_
26.5 29
PDB header:biosynthetic protein
Chain: B: PDB Molecule:uncharacterized protein blr2150;
PDBTitle: crystal structure of ent-kaurene synthase bjks from bradyrhizobium2 japonicum
7d2p7tc1
25.1 47
Fold:Voltage-gated potassium channels
Superfamily:Voltage-gated potassium channels
Family:Voltage-gated potassium channels
8c4pw1B_
20.0 67
PDB header:structural genomics, unknown function
Chain: B: PDB Molecule:uncharacterized protein;
PDBTitle: crystal structure of a protein with unknown function (clolep_02462)2 from clostridium leptum dsm 753 at 2.10 a resolution
9c6h9iB_
18.9 55
PDB header:rna binding protein
Chain: B: PDB Molecule:csf5;
PDBTitle: csf5, crispr-cas type iv cas6 crrna endonuclease
10c3chxE_
18.7 23
PDB header:membrane protein
Chain: E: PDB Molecule:pmob;
PDBTitle: crystal structure of methylosinus trichosporium ob3b particulate2 methane monooxygenase (pmmo)
11c3nglA_
15.8 100
PDB header:oxidoreductase, hydrolase
Chain: A: PDB Molecule:bifunctional protein fold;
PDBTitle: crystal structure of bifunctional 5,10-methylenetetrahydrofolate2 dehydrogenase / cyclohydrolase from thermoplasma acidophilum
12c5nhsB_
15.5 100
PDB header:oxidoreductase
Chain: B: PDB Molecule:bifunctional protein fold;
PDBTitle: the crystal structure of xanthomonas albilineans n5, n10-2 methylenetetrahydrofolate dehydrogenase-cyclohydrolase (fold)
13c4o65A_
15.4 38
PDB header:oxidoreductase
Chain: A: PDB Molecule:putative archaeal ammonia monooxygenase subunit b;
PDBTitle: crystal structure of the cupredoxin domain of amob from nitrosocaldus2 yellowstonii
14c1a4iB_
14.5 100
PDB header:oxidoreductase
Chain: B: PDB Molecule:methylenetetrahydrofolate dehydrogenase /
PDBTitle: human tetrahydrofolate dehydrogenase / cyclohydrolase
15d1kjna_
14.4 36
Fold:Hypothetical protein MTH777 (MT0777)
Superfamily:Hypothetical protein MTH777 (MT0777)
Family:Hypothetical protein MTH777 (MT0777)
16c2c2xB_
14.4 86
PDB header:oxidoreductase
Chain: B: PDB Molecule:methylenetetrahydrofolate dehydrogenase-
PDBTitle: three dimensional structure of bifunctional methylenetetrahydrofolate2 dehydrogenase-cyclohydrolase from mycobacterium tuberculosis
17c5zf1A_
14.2 100
PDB header:oxidoreductase
Chain: A: PDB Molecule:5,10-methylenetetrahydrofolate dehydrogenase;
PDBTitle: molecular structure of a novel 5,10-methylenetetrahydrofolate2 dehydrogenase from the silkworm, bombyx mori
18c1b0aA_
14.0 100
PDB header:oxidoreductase,hydrolase
Chain: A: PDB Molecule:protein (fold bifunctional protein);
PDBTitle: 5,10, methylene-tetrahydropholate2 dehydrogenase/cyclohydrolase from e coli.
19c5z70B_
13.5 20
PDB header:hydrolase
Chain: B: PDB Molecule:oleate hydratase;
PDBTitle: crystal strucure of oleate hydratase from stenotrophomonas sp. kctc2 12332
20c4cjxA_
13.0 100
PDB header:oxidoreductase
Chain: A: PDB Molecule:c-1-tetrahydrofolate synthase, cytoplasmic, putative;
PDBTitle: the crystal structure of trypanosoma brucei n5, n10-2 methylenetetrahydrofolate dehydrogenase-cyclohydrolase (fold)3 complexed with nadp cofactor and inhibitor
21c4b4uB_
not modelled 12.8 100
PDB header:oxidoreductase
Chain: B: PDB Molecule:bifunctional protein fold;
PDBTitle: crystal structure of acinetobacter baumannii n5,2 n10-methylenetetrahydrofolate dehydrogenase-cyclohydrolase (fold)3 complexed with nadp cofactor
22c3p2oB_
not modelled 12.6 100
PDB header:oxidoreductase, hydrolase
Chain: B: PDB Molecule:bifunctional protein fold;
PDBTitle: crystal structure of fold bifunctional protein from campylobacter2 jejuni
23c4a5oB_
not modelled 12.5 100
PDB header:oxidoreductase
Chain: B: PDB Molecule:bifunctional protein fold;
PDBTitle: crystal structure of pseudomonas aeruginosa n5, n10-2 methylenetetrahydrofolate dehydrogenase-cyclohydrolase (fold)
24c3l07B_
not modelled 12.5 100
PDB header:oxidoreductase,hydrolase
Chain: B: PDB Molecule:bifunctional protein fold;
PDBTitle: methylenetetrahydrofolate dehydrogenase/methenyltetrahydrofolate2 cyclohydrolase, putative bifunctional protein fold from francisella3 tularensis.
25c3p2oA_
not modelled 12.3 100
PDB header:oxidoreductase, hydrolase
Chain: A: PDB Molecule:bifunctional protein fold;
PDBTitle: crystal structure of fold bifunctional protein from campylobacter2 jejuni
26c5tc4A_
not modelled 12.3 100
PDB header:oxidoreductase
Chain: A: PDB Molecule:bifunctional methylenetetrahydrofolate
PDBTitle: crystal structure of human mitochondrial methylenetetrahydrofolate2 dehydrogenase-cyclohydrolase (mthfd2) in complex with ly345899 and3 cofactors
27d1kshb_
not modelled 12.3 53
Fold:Immunoglobulin-like beta-sandwich
Superfamily:E set domains
Family:RhoGDI-like
28d1b0aa1
not modelled 11.7 100
Fold:NAD(P)-binding Rossmann-fold domains
Superfamily:NAD(P)-binding Rossmann-fold domains
Family:Aminoacid dehydrogenase-like, C-terminal domain
29d1xtda2
not modelled 11.7 46
Fold:OB-fold
Superfamily:Nucleic acid-binding proteins
Family:Cold shock DNA-binding domain-like
30c6apeA_
not modelled 11.7 86
PDB header:oxidoreductase, hydrolase
Chain: A: PDB Molecule:bifunctional protein fold;
PDBTitle: crystal structure of bifunctional protein fold from helicobacter2 pylori
31c4a26B_
not modelled 11.5 100
PDB header:oxidoreductase
Chain: B: PDB Molecule:putative c-1-tetrahydrofolate synthase, cytoplasmic;
PDBTitle: the crystal structure of leishmania major n5,n10-2 methylenetetrahydrofolate dehydrogenase/cyclohydrolase
32c4ak2A_
not modelled 11.0 29
PDB header:heparin-binding protein
Chain: A: PDB Molecule:bt_4661;
PDBTitle: structure of bt4661, a suse-like surface located polysaccharide2 binding protein from the bacteroides thetaiotaomicron heparin3 utilisation locus
33d1a34a_
not modelled 10.6 43
Fold:Nucleoplasmin-like/VP (viral coat and capsid proteins)
Superfamily:Satellite viruses
Family:Satellite viruses
34c5odoA_
not modelled 10.0 20
PDB header:lyase
Chain: A: PDB Molecule:isomerase;
PDBTitle: crystal structure of the oleate hydratase of rhodococcus erythropolis
35c4uirB_
not modelled 9.9 25
PDB header:lyase
Chain: B: PDB Molecule:oleate hydratase;
PDBTitle: structure of oleate hydratase from elizabethkingia2 meningoseptica
36c6gcs3_
not modelled 9.8 20
PDB header:oxidoreductase
Chain: 3: PDB Molecule:nd3 subunit (nu3m);
PDBTitle: cryo-em structure of respiratory complex i from yarrowia lipolytica
37d1a4ia1
not modelled 9.6 100
Fold:NAD(P)-binding Rossmann-fold domains
Superfamily:NAD(P)-binding Rossmann-fold domains
Family:Aminoacid dehydrogenase-like, C-terminal domain
38c2mi2A_
not modelled 9.4 30
PDB header:transport protein
Chain: A: PDB Molecule:sec-independent protein translocase protein tatb;
PDBTitle: solution structure of the e. coli tatb protein in dpc micelles
39c4gokG_
not modelled 9.2 47
PDB header:signaling protein
Chain: G: PDB Molecule:protein unc-119 homolog a;
PDBTitle: the crystal structure of arl2gppnhp in complex with unc119a
40c2kr6A_
not modelled 9.2 19
PDB header:hydrolase
Chain: A: PDB Molecule:presenilin-1;
PDBTitle: solution structure of presenilin-1 ctf subunit
41c2mckA_
not modelled 8.9 43
PDB header:hydrolase
Chain: A: PDB Molecule:polyprotein;
PDBTitle: backbone 1h, 13c, and 15n chemical shift assignments for murine2 norovirus cr6 ns1/2 protein
42c3rkoE_
not modelled 8.1 28
PDB header:oxidoreductase
Chain: E: PDB Molecule:nadh-quinone oxidoreductase subunit a;
PDBTitle: crystal structure of the membrane domain of respiratory complex i from2 e. coli at 3.0 angstrom resolution
43c3rkoA_
not modelled 8.1 28
PDB header:oxidoreductase
Chain: A: PDB Molecule:nadh-quinone oxidoreductase subunit a;
PDBTitle: crystal structure of the membrane domain of respiratory complex i from2 e. coli at 3.0 angstrom resolution
44c2mcdA_
not modelled 7.4 43
PDB header:hydrolase
Chain: A: PDB Molecule:murine norovirus 1;
PDBTitle: backbone 1h, 13c, and 15n chemical shift assignments for murine2 norovirus ns1/2 d94e mutant
45c2k5cA_
not modelled 7.3 17
PDB header:metal binding protein
Chain: A: PDB Molecule:uncharacterized protein pf0385;
PDBTitle: nmr structure for pf0385
46c4m5bA_
not modelled 7.2 20
PDB header:membrane protein
Chain: A: PDB Molecule:cobalamin biosynthesis protein cbim;
PDBTitle: crystal structure of an truncated transition metal transporter
47c4m5cA_
not modelled 7.2 20
PDB header:membrane protein
Chain: A: PDB Molecule:cobalamin biosynthesis protein cbim;
PDBTitle: crystal structure of an truncated transition metal transporter
48c6mwqB_
not modelled 7.2 36
PDB header:lyase/fluorescent protein
Chain: B: PDB Molecule:darpin, muscle-type aldolase chimeric fusion;
PDBTitle: single particle cryoem structure of a darpin-aldolase platform in2 complex with gfp
49c1n93X_
not modelled 7.1 30
PDB header:viral protein
Chain: X: PDB Molecule:p40 nucleoprotein;
PDBTitle: crystal structure of the borna disease virus nucleoprotein
50d1n93x_
not modelled 7.1 30
Fold:P40 nucleoprotein
Superfamily:P40 nucleoprotein
Family:P40 nucleoprotein
51c3kihC_
not modelled 6.9 40
PDB header:sugar binding protein
Chain: C: PDB Molecule:5-bladed beta-propeller lectin;
PDBTitle: the crystal structures of two fragments truncated from 5-bladed beta-2 propeller lectin, tachylectin-2 (lib2-d2-15)
52c5d6hB_
not modelled 6.8 50
PDB header:chaperone/protein transport
Chain: B: PDB Molecule:csua/b;
PDBTitle: crystal structure of csuc-csua/b chaperone-major subunit pre-assembly2 complex from csu biofilm-mediating pili of acinetobacter baumannii
53d1ro7a_
not modelled 6.7 37
Fold:Alpha-2,3/8-sialyltransferase CstII
Superfamily:Alpha-2,3/8-sialyltransferase CstII
Family:Alpha-2,3/8-sialyltransferase CstII
54c3qheB_
not modelled 6.6 100
PDB header:signaling protein/splicing
Chain: B: PDB Molecule:kh domain-containing, rna-binding, signal transduction-
PDBTitle: crystal structure of the complex between the armadillo repeat domain2 of adenomatous polyposis coli and the tyrosine-rich domain of sam68
55d1ztda1
not modelled 6.5 25
Fold:RNase III domain-like
Superfamily:RNase III domain-like
Family:PF0609-like
56c2ru8A_
not modelled 6.5 25
PDB header:replication
Chain: A: PDB Molecule:primosomal protein 1;
PDBTitle: dnat c-terminal domain
57d1rzhh1
not modelled 6.5 71
Fold:PRC-barrel domain
Superfamily:PRC-barrel domain
Family:Photosynthetic reaction centre, H-chain, cytoplasmic domain
58d1droa_
not modelled 6.4 50
Fold:PH domain-like barrel
Superfamily:PH domain-like
Family:Pleckstrin-homology domain (PH domain)
59c3wvbA_
not modelled 6.4 67
PDB header:hydrolase
Chain: A: PDB Molecule:upf0254 protein mj1251;
PDBTitle: hcgf from methanocaldococcus jannaschii
60c5djbD_
not modelled 6.4 21
PDB header:structural protein
Chain: D: PDB Molecule:microcompartments protein;
PDBTitle: structure of the haliangium ochraceum bmc-h shell protein
61c2do6A_
not modelled 6.4 23
PDB header:ligase
Chain: A: PDB Molecule:e3 ubiquitin-protein ligase cbl-b;
PDBTitle: solution structure of rsgi ruh-065, a uba domain from human2 cdna
62d1jmxg_
not modelled 6.3 55
Fold:Non-globular all-alpha subunits of globular proteins
Superfamily:Quinohemoprotein amine dehydrogenase C chain
Family:Quinohemoprotein amine dehydrogenase C chain
63d2c42a2
not modelled 6.3 33
Fold:Thiamin diphosphate-binding fold (THDP-binding)
Superfamily:Thiamin diphosphate-binding fold (THDP-binding)
Family:PFOR PP module
64c5wsnC_
not modelled 6.2 16
PDB header:virus
Chain: C: PDB Molecule:e protein;
PDBTitle: structure of japanese encephalitis virus
65c6r7tB_
not modelled 6.2 32
PDB header:immune system
Chain: B: PDB Molecule:melanoma-associated antigen b1;
PDBTitle: crystal structure of human melanoma-associated antigen b1 (mageb1) in2 complex with nanobody
66c3gczA_
not modelled 6.1 47
PDB header:transferase
Chain: A: PDB Molecule:polyprotein;
PDBTitle: yokose virus methyltransferase in complex with adomet
67d1pbyc_
not modelled 5.9 45
Fold:Non-globular all-alpha subunits of globular proteins
Superfamily:Quinohemoprotein amine dehydrogenase C chain
Family:Quinohemoprotein amine dehydrogenase C chain
68c1lt1G_
not modelled 5.9 37
PDB header:de novo protein
Chain: G: PDB Molecule:l13g-df1;
PDBTitle: sliding helix induced change of coordination geometry in a2 model di-mn(ii) protein
69c6e3yP_
not modelled 5.8 62
PDB header:signaling protein
Chain: P: PDB Molecule:calcitonin gene-related peptide 1;
PDBTitle: cryo-em structure of the active, gs-protein complexed, human cgrp2 receptor
70c2ekkA_
not modelled 5.7 18
PDB header:protein binding
Chain: A: PDB Molecule:uba domain from e3 ubiquitin-protein ligase
PDBTitle: solution structure of ruh-074, a human uba domain
71c4ou6A_
not modelled 5.7 25
PDB header:replication/dna
Chain: A: PDB Molecule:primosomal protein 1;
PDBTitle: crystal structure of dnat84-153-dt10 ssdna complex form 1
72c2kglA_
not modelled 5.4 14
PDB header:chaperone
Chain: A: PDB Molecule:mesoderm development candidate 2;
PDBTitle: nmr solution structure of mesd
73c3eeqB_
not modelled 5.4 16
PDB header:structural genomics, unknown function
Chain: B: PDB Molecule:putative cobalamin biosynthesis protein g homolog;
PDBTitle: crystal structure of a putative cobalamin biosynthesis protein g2 homolog from sulfolobus solfataricus
74d1igna2
not modelled 5.4 43
Fold:DNA/RNA-binding 3-helical bundle
Superfamily:Homeodomain-like
Family:DNA-binding domain of rap1
75d1muka_
not modelled 5.4 39
Fold:DNA/RNA polymerases
Superfamily:DNA/RNA polymerases
Family:RNA-dependent RNA-polymerase
76c2wa0A_
not modelled 5.4 32
PDB header:immune system
Chain: A: PDB Molecule:melanoma-associated antigen 4;
PDBTitle: crystal structure of the human magea4
77d2axtk1
not modelled 5.4 47
Fold:Single transmembrane helix
Superfamily:Photosystem II reaction center protein K, PsbK
Family:PsbK-like
78d1ciya3
not modelled 5.3 20
Fold:Toxins' membrane translocation domains
Superfamily:delta-Endotoxin (insectocide), N-terminal domain
Family:delta-Endotoxin (insectocide), N-terminal domain
79c4djhA_
not modelled 5.3 11
PDB header:hormone receptor/antagonist
Chain: A: PDB Molecule:kappa-type opioid receptor, lysozyme;
PDBTitle: structure of the human kappa opioid receptor in complex with jdtic
80c1w99A_
not modelled 5.2 20
PDB header:toxin
Chain: A: PDB Molecule:pesticidial crystal protein cry4ba;
PDBTitle: mosquito-larvicidal toxin cry4ba from bacillus thuringiensis ssp.2 israelensis
81c1kzvA_
not modelled 5.2 29
PDB header:viral protein
Chain: A: PDB Molecule:vpr protein;
PDBTitle: structure of human immunodeficiency virus type 1 vpr(34-51)2 peptide in chloroform methanol
82c1kztA_
not modelled 5.2 29
PDB header:viral protein
Chain: A: PDB Molecule:vpr protein;
PDBTitle: structure of human immunodeficiency virus type 1 vpr(34-51)2 peptide in dpc micelle containing aqueous solution
83c1kzsA_
not modelled 5.2 29
PDB header:viral protein
Chain: A: PDB Molecule:vpr protein;
PDBTitle: structure of human immunodeficiency virus type 1 vpr(34-51)2 peptide in aqueous tfe solution
84c6owkA_
not modelled 5.2 30
PDB header:toxin
Chain: A: PDB Molecule:pesticidal crystal protein cry1be, cry1k-like protein
PDBTitle: crystal structure of a bacillus thuringiensis cry1b.867 tryptic core2 variant
85d1bw3a_
not modelled 5.2 63
Fold:Double psi beta-barrel
Superfamily:Barwin-like endoglucanases
Family:Barwin
86c3ofgA_
not modelled 5.1 22
PDB header:chaperone
Chain: A: PDB Molecule:boca/mesd chaperone for ywtd beta-propeller-egf protein 1;
PDBTitle: structured domain of caenorhabditis elegans bmy-1
87c5v6iA_
not modelled 5.1 60
PDB header:sugar binding protein
Chain: A: PDB Molecule:tmv resistance protein y3;
PDBTitle: glycan binding protein y3 from mushroom coprinus comatus possesses2 anti-leukemic activity - pt derivative
88c6cfzF_
not modelled 5.1 26
PDB header:nuclear protein
Chain: F: PDB Molecule:dad1,dad1;
PDBTitle: structure of the dash/dam1 complex shows its role at the yeast2 kinetochore-microtubule interface
89c6ovbA_
not modelled 5.1 10
PDB header:toxin
Chain: A: PDB Molecule:active core crystal toxin protein 1d;
PDBTitle: crystal structure of a bacillus thuringiensis cry1da tryptic core2 variant

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Transmembrane helix prediction 

Transmembrane helices have been predicted in your sequence to adopt the topology shown below