Phyre Home Retrieve Phyre Job Id
Emailmdejesus@rockefeller.edu
DescriptionRVBD0539_(-)_631746_632378
DateFri Jul 26 01:50:09 BST 2019
Unique Job IDb29a23a9bb71311f
SequenceVLPCLNEEES ... Download FASTA
Job Typenormal
Job Expiry

Summary 

Top model
Image coloured by rainbow N → C terminus
Model dimensions (Å):X:49.712 Y:47.582 Z:43.653
Model (left) based on template c5mm1A_
Top template information
PDB header:membrane protein
Chain: A: PDB Molecule:dolichol monophosphate mannose synthase;
PDBTitle: dolichyl phosphate mannose synthase in complex with gdp and dolichyl2 phosphate mannose
Confidence and coverage
Confidence: 99.9% Coverage: 99%
207 residues ( 99% of your sequence) have been modelled with 99.9% confidence by the single highest scoring template.
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Sequence analysis 

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#
Template Alignment Coverage3D Model Confidence
% i.d. Template Information
1c5mm1A_



99.9 21
PDB header:membrane protein
Chain: A: PDB Molecule:dolichol monophosphate mannose synthase;
PDBTitle: dolichyl phosphate mannose synthase in complex with gdp and dolichyl2 phosphate mannose
2c2ffuA_



99.9 19
PDB header:transferase
Chain: A: PDB Molecule:polypeptide n-acetylgalactosaminyltransferase 2;
PDBTitle: crystal structure of human ppgalnact-2 complexed with udp and ea2
3c5tz8C_



99.9 16
PDB header:transferase
Chain: C: PDB Molecule:glycosyl transferase;
PDBTitle: crystal structure of s. aureus tars
4c6e4rB_



99.9 17
PDB header:transferase
Chain: B: PDB Molecule:polypeptide n-acetylgalactosaminyltransferase 9;
PDBTitle: crystal structure of the drosophila melanogaster polypeptide n-2 acetylgalactosaminyl transferase pgant9b
5c3f1yC_



99.9 21
PDB header:transferase
Chain: C: PDB Molecule:mannosyl-3-phosphoglycerate synthase;
PDBTitle: mannosyl-3-phosphoglycerate synthase from rubrobacter xylanophilus
6c2d7iA_



99.9 17
PDB header:transferase
Chain: A: PDB Molecule:polypeptide n-acetylgalactosaminyltransferase 10;
PDBTitle: crystal structure of pp-galnac-t10 with udp, galnac and mn2+
7c5nqaA_



99.9 17
PDB header:transferase
Chain: A: PDB Molecule:polypeptide n-acetylgalactosaminyltransferase 4;
PDBTitle: crystal structure of galnac-t4 in complex with the monoglycopeptide 3
8c6iwqE_



99.9 20
PDB header:transferase
Chain: E: PDB Molecule:n-acetylgalactosaminyltransferase 7;
PDBTitle: crystal structure of galnac-t7 with mn2+
9c6h4mA_



99.9 10
PDB header:transferase
Chain: A: PDB Molecule:probable ss-1,3-n-acetylglucosaminyltransferase;
PDBTitle: tarp-udp-glcnac-3rbop
10d1xhba2



99.9 19
Fold:Nucleotide-diphospho-sugar transferases
Superfamily:Nucleotide-diphospho-sugar transferases
Family:Polypeptide N-acetylgalactosaminyltransferase 1, N-terminal domain
11c1xhbA_



99.9 20
PDB header:transferase
Chain: A: PDB Molecule:polypeptide n-acetylgalactosaminyltransferase 1;
PDBTitle: the crystal structure of udp-galnac: polypeptide alpha-n-2 acetylgalactosaminyltransferase-t1
12c2z86D_



99.9 14
PDB header:transferase
Chain: D: PDB Molecule:chondroitin synthase;
PDBTitle: crystal structure of chondroitin polymerase from escherichia coli2 strain k4 (k4cp) complexed with udp-glcua and udp
13c5heaA_



99.9 14
PDB header:transferase
Chain: A: PDB Molecule:putative glycosyltransferase (galt1);
PDBTitle: cgt structure in hexamer
14c3ckvA_



99.9 26
PDB header:unknown function
Chain: A: PDB Molecule:putative uncharacterized protein;
PDBTitle: crystal structure of a mycobacterial protein
15c5ekeB_



99.9 21
PDB header:transferase
Chain: B: PDB Molecule:uncharacterized glycosyltransferase sll0501;
PDBTitle: structure of the polyisoprenyl-phosphate glycosyltransferase gtrb2 (f215a mutant)
16c4hg6A_



99.9 18
PDB header:transferase
Chain: A: PDB Molecule:cellulose synthase subunit a;
PDBTitle: structure of a cellulose synthase - cellulose translocation2 intermediate
17c3bcvA_



99.9 18
PDB header:transferase
Chain: A: PDB Molecule:putative glycosyltransferase protein;
PDBTitle: crystal structure of a putative glycosyltransferase from bacteroides2 fragilis
18c4fixA_



99.9 16
PDB header:transferase
Chain: A: PDB Molecule:udp-galactofuranosyl transferase glft2;
PDBTitle: crystal structure of glft2
19d1qg8a_



99.8 12
Fold:Nucleotide-diphospho-sugar transferases
Superfamily:Nucleotide-diphospho-sugar transferases
Family:Spore coat polysaccharide biosynthesis protein SpsA
20d1omza_



99.8 9
Fold:Nucleotide-diphospho-sugar transferases
Superfamily:Nucleotide-diphospho-sugar transferases
Family:Exostosin
21c1omxB_



not modelled 99.8 10
PDB header:transferase
Chain: B: PDB Molecule:alpha-1,4-n-acetylhexosaminyltransferase extl2;
PDBTitle: crystal structure of mouse alpha-1,4-n-acetylhexosaminyltransferase2 (extl2)
22c2qgiA_



not modelled 99.8 14
PDB header:transferase
Chain: A: PDB Molecule:atp synthase subunits region orf 6;
PDBTitle: the udp complex structure of the sixth gene product of the f1-atpase2 operon of rhodobacter blasticus
23c6p61D_



not modelled 99.7 17
PDB header:transferase
Chain: D: PDB Molecule:glycosyltransferase;
PDBTitle: structure of a glycosyltransferase from leptospira borgpetersenii2 serovar hardjo-bovis (strain jb197)
24c3zf8A_



not modelled 99.7 10
PDB header:transferase
Chain: A: PDB Molecule:mannan polymerase complexes subunit mnn9;
PDBTitle: crystal structure of saccharomyces cerevisiae mnn9 in2 complex with gdp and mn.
25c5z8bB_



not modelled 99.7 10
PDB header:transferase
Chain: B: PDB Molecule:kfia protein;
PDBTitle: truncated n-acetylglucosaminyl transferase kfia from e. coli k5 strain2 apo form
26d2bo4a1



not modelled 99.4 20
Fold:Nucleotide-diphospho-sugar transferases
Superfamily:Nucleotide-diphospho-sugar transferases
Family:MGS-like
27c5ggfC_



not modelled 99.3 16
PDB header:transferase, sugar binding protein
Chain: C: PDB Molecule:protein o-linked-mannose beta-1,2-n-
PDBTitle: crystal structure of human protein o-mannose beta-1,2-n-2 acetylglucosaminyltransferase form ii
28c4irqB_



not modelled 98.6 15
PDB header:transferase
Chain: B: PDB Molecule:beta-1,4-galactosyltransferase 7;
PDBTitle: crystal structure of catalytic domain of human beta1,2 4galactosyltransferase 7 in closed conformation in complex with3 manganese and udp
29d1fo8a_



not modelled 97.5 13
Fold:Nucleotide-diphospho-sugar transferases
Superfamily:Nucleotide-diphospho-sugar transferases
Family:N-acetylglucosaminyltransferase I
30d1pzta_



not modelled 97.5 13
Fold:Nucleotide-diphospho-sugar transferases
Superfamily:Nucleotide-diphospho-sugar transferases
Family:beta 1,4 galactosyltransferase (b4GalT1)
31c2wvmA_



not modelled 95.7 21
PDB header:transferase
Chain: A: PDB Molecule:mannosyl-3-phosphoglycerate synthase;
PDBTitle: h309a mutant of mannosyl-3-phosphoglycerate synthase from2 thermus thermophilus hb27 in complex with3 gdp-alpha-d-mannose and mg(ii)
32c3lw6A_



not modelled 95.4 18
PDB header:transferase
Chain: A: PDB Molecule:beta-4-galactosyltransferase 7;
PDBTitle: crystal structure of drosophila beta1,4-galactosyltransferase-7
33c5vcmA_



not modelled 91.6 17
PDB header:transferase
Chain: A: PDB Molecule:alpha-1,6-mannosyl-glycoprotein 2-beta-n-
PDBTitle: alpha-1,6-mannosyl-glycoprotein 2-beta-n-acetylglucosaminyltransferase2 with bound udp and manganese
34c2zu8A_



not modelled 90.5 17
PDB header:transferase
Chain: A: PDB Molecule:mannosyl-3-phosphoglycerate synthase;
PDBTitle: crystal structure of mannosyl-3-phosphoglycerate synthase2 from pyrococcus horikoshii
35c6fxyA_



not modelled 75.8 12
PDB header:transferase
Chain: A: PDB Molecule:procollagen-lysine,2-oxoglutarate 5-dioxygenase 3;
PDBTitle: crystal structure of full-length human lysyl hydroxylase lh3 -2 cocrystal with fe2+, mn2+, udp-gal - structure from long-wavelength3 s-sad
36c2d0jD_



not modelled 75.0 15
PDB header:transferase
Chain: D: PDB Molecule:galactosylgalactosylxylosylprotein 3-beta-
PDBTitle: crystal structure of human glcat-s apo form
37d1v82a_



not modelled 70.9 20
Fold:Nucleotide-diphospho-sugar transferases
Superfamily:Nucleotide-diphospho-sugar transferases
Family:1,3-glucuronyltransferase
38d3cu0a1



not modelled 68.6 17
Fold:Nucleotide-diphospho-sugar transferases
Superfamily:Nucleotide-diphospho-sugar transferases
Family:1,3-glucuronyltransferase
39c2gamA_



not modelled 57.8 13
PDB header:transferase
Chain: A: PDB Molecule:beta-1,6-n-acetylglucosaminyltransferase;
PDBTitle: x-ray crystal structure of murine leukocyte-type core 2 b1,6-n-2 acetylglucosaminyltransferase (c2gnt-l) in complex with galb1,3galnac
40d1vh3a_



not modelled 57.2 14
Fold:Nucleotide-diphospho-sugar transferases
Superfamily:Nucleotide-diphospho-sugar transferases
Family:Cytidylytransferase
41d1lk5a1



not modelled 47.7 11
Fold:NagB/RpiA/CoA transferase-like
Superfamily:NagB/RpiA/CoA transferase-like
Family:D-ribose-5-phosphate isomerase (RpiA), catalytic domain
42d1uj4a1



not modelled 41.4 10
Fold:NagB/RpiA/CoA transferase-like
Superfamily:NagB/RpiA/CoA transferase-like
Family:D-ribose-5-phosphate isomerase (RpiA), catalytic domain
43d2nqra3



not modelled 28.8 13
Fold:Molybdenum cofactor biosynthesis proteins
Superfamily:Molybdenum cofactor biosynthesis proteins
Family:MoeA central domain-like
44d1zbsa2



not modelled 24.5 44
Fold:Ribonuclease H-like motif
Superfamily:Actin-like ATPase domain
Family:BadF/BadG/BcrA/BcrD-like
45c6cgjA_



not modelled 17.2 16
PDB header:hydrolase
Chain: A: PDB Molecule:effector protein lem4 (lpg1101);
PDBTitle: structure of the had domain of effector protein lem4 (lpg1101) from2 legionella pneumophila
46d2ftsa3



not modelled 15.0 13
Fold:Molybdenum cofactor biosynthesis proteins
Superfamily:Molybdenum cofactor biosynthesis proteins
Family:MoeA central domain-like
47c3ssmB_



not modelled 14.7 24
PDB header:transferase
Chain: B: PDB Molecule:methyltransferase;
PDBTitle: myce methyltransferase from the mycinamycin biosynthetic pathway in2 complex with mg and sah, crystal form 1
48c5yh1A_



not modelled 13.7 21
PDB header:ribosomal protein
Chain: A: PDB Molecule:member of s1p family of ribosomal proteins;
PDBTitle: member of s1p family of ribosomal proteins pf0399 dhh domain
49d1ffki_



not modelled 13.5 12
Fold:Ribosomal proteins S24e, L23 and L15e
Superfamily:Ribosomal proteins S24e, L23 and L15e
Family:L15e
50c2wawA_



not modelled 13.3 20
PDB header:unknown function
Chain: A: PDB Molecule:moba relate protein;
PDBTitle: crystal structure of mycobacterium tuberculosis rv0371c2 homolog from mycobacterium sp. strain jc1
51d1m0sa1



not modelled 13.1 13
Fold:NagB/RpiA/CoA transferase-like
Superfamily:NagB/RpiA/CoA transferase-like
Family:D-ribose-5-phosphate isomerase (RpiA), catalytic domain
52c6nonB_



not modelled 12.8 15
PDB header:dna binding protein
Chain: B: PDB Molecule:cobyrinic acid ac-diamide synthase;
PDBTitle: structure of cyanthece apo mcda
53d1jj2l_



not modelled 12.7 6
Fold:Ribosomal proteins S24e, L23 and L15e
Superfamily:Ribosomal proteins S24e, L23 and L15e
Family:L15e
54c4ehxA_



not modelled 12.3 11
PDB header:transferase
Chain: A: PDB Molecule:tetraacyldisaccharide 4'-kinase;
PDBTitle: crystal structure of lpxk from aquifex aeolicus at 1.9 angstrom2 resolution
55d1vqom1



not modelled 11.1 12
Fold:Ribosomal proteins S24e, L23 and L15e
Superfamily:Ribosomal proteins S24e, L23 and L15e
Family:L15e
56c5vcsB_



not modelled 11.1 15
PDB header:transferase
Chain: B: PDB Molecule:alpha-1,6-mannosyl-glycoprotein 2-beta-n-
PDBTitle: alpha-1,6-mannosyl-glycoprotein 2-beta-n-acetylglucosaminyltransferase2 with bound acceptor
57c4a1cL_



not modelled 10.9 15
PDB header:ribosome
Chain: L: PDB Molecule:ribosomal protein l15;
PDBTitle: t.thermophila 60s ribosomal subunit in complex with2 initiation factor 6. this file contains 5s rrna,3 5.8s rrna and proteins of molecule 4.
58c3iz5P_



not modelled 10.9 12
PDB header:ribosome
Chain: P: PDB Molecule:60s ribosomal protein l15 (l15e);
PDBTitle: localization of the large subunit ribosomal proteins into a 5.5 a2 cryo-em map of triticum aestivum translating 80s ribosome
59c1uz5A_



not modelled 10.7 28
PDB header:molybdopterin biosynthesis
Chain: A: PDB Molecule:402aa long hypothetical molybdopterin
PDBTitle: the crystal structure of molybdopterin biosynthesis moea2 protein from pyrococcus horikosii
60c2fq1A_



not modelled 10.7 8
PDB header:hydrolase
Chain: A: PDB Molecule:isochorismatase;
PDBTitle: crystal structure of the two-domain non-ribosomal peptide synthetase2 entb containing isochorismate lyase and aryl-carrier protein domains
61c3zf7Q_



not modelled 10.5 23
PDB header:ribosome
Chain: Q: PDB Molecule:ribosomal protein l15;
PDBTitle: high-resolution cryo-electron microscopy structure of the trypanosoma2 brucei ribosome
62c3brcA_



not modelled 10.2 29
PDB header:structural genomics, unknown function
Chain: A: PDB Molecule:conserved protein of unknown function;
PDBTitle: crystal structure of a conserved protein of unknown function from2 methanobacterium thermoautotrophicum
63c3j21M_



not modelled 9.9 12
PDB header:ribosome
Chain: M: PDB Molecule:50s ribosomal protein l15e;
PDBTitle: promiscuous behavior of proteins in archaeal ribosomes revealed by2 cryo-em: implications for evolution of eukaryotic ribosomes (50s3 ribosomal proteins)
64c3ktsA_



not modelled 9.7 8
PDB header:transcriptional regulator
Chain: A: PDB Molecule:glycerol uptake operon antiterminator regulatory protein;
PDBTitle: crystal structure of glycerol uptake operon antiterminator regulatory2 protein from listeria monocytogenes str. 4b f2365
65c3nyiA_



not modelled 9.6 10
PDB header:lipid binding protein
Chain: A: PDB Molecule:fat acid-binding protein;
PDBTitle: the crystal structure of a fat acid (stearic acid)-binding protein2 from eubacterium ventriosum atcc 27560.
66d1zxoa1



not modelled 9.5 50
Fold:Ribonuclease H-like motif
Superfamily:Actin-like ATPase domain
Family:BadF/BadG/BcrA/BcrD-like
67c2g4rB_



not modelled 9.3 16
PDB header:biosynthetic protein
Chain: B: PDB Molecule:molybdopterin biosynthesis mog protein;
PDBTitle: anomalous substructure of moga
68c3j39N_



not modelled 9.1 12
PDB header:ribosome
Chain: N: PDB Molecule:60s ribosomal protein l15;
PDBTitle: structure of the d. melanogaster 60s ribosomal proteins
69d1pzxa_



not modelled 8.9 10
Fold:DAK1/DegV-like
Superfamily:DAK1/DegV-like
Family:DegV-like
70c3kf8C_



not modelled 8.6 25
PDB header:structural protein
Chain: C: PDB Molecule:protein stn1;
PDBTitle: crystal structure of c. tropicalis stn1-ten1 complex
71c4ytgA_



not modelled 8.1 18
PDB header:hydrolase
Chain: A: PDB Molecule:peptidylarginine deiminase;
PDBTitle: crystal structure of porphyromonas gingivalis peptidylarginine2 deiminase (ppad) mutant c351a in complex with dipeptide met-arg.
72c1s1iL_



not modelled 8.1 12
PDB header:ribosome
Chain: L: PDB Molecule:60s ribosomal protein l15-a;
PDBTitle: structure of the ribosomal 80s-eef2-sordarin complex from yeast2 obtained by docking atomic models for rna and protein components into3 a 11.7 a cryo-em map. this file, 1s1i, contains 60s subunit. the 40s4 ribosomal subunit is in file 1s1h.
73c5l1aA_



not modelled 8.0 27
PDB header:unknown function
Chain: A: PDB Molecule:uncharacterized protein;
PDBTitle: crystal structure of uncharacterized protein lpg2271 from legionella2 pneumophila
74c2jqlA_



not modelled 7.7 25
PDB header:cell cycle
Chain: A: PDB Molecule:dna damage response protein kinase dun1;
PDBTitle: nmr structure of the yeast dun1 fha domain in complex with2 a doubly phosphorylated (pt) peptide derived from rad533 scd1
75d1ta0a_



not modelled 7.6 9
Fold:HAD-like
Superfamily:HAD-like
Family:NLI interacting factor-like phosphatase
76c2j0bA_



not modelled 7.6 13
PDB header:transferase
Chain: A: PDB Molecule:beta-1,3-n-acetylglucosaminyltransferase manic fringe;
PDBTitle: structure of the catalytic domain of mouse manic fringe in2 complex with udp and manganese
77d1w55a1



not modelled 7.4 11
Fold:Nucleotide-diphospho-sugar transferases
Superfamily:Nucleotide-diphospho-sugar transferases
Family:Cytidylytransferase
78c2nqqA_



not modelled 7.3 15
PDB header:biosynthetic protein
Chain: A: PDB Molecule:molybdopterin biosynthesis protein moea;
PDBTitle: moea r137q
79c3fdjA_



not modelled 7.2 24
PDB header:structural genomics, unknown function
Chain: A: PDB Molecule:degv family protein;
PDBTitle: the structure of a degv family protein from eubacterium eligens.
80c4lhbC_



not modelled 7.1 25
PDB header:transferase
Chain: C: PDB Molecule:molybdopterin adenylyltransferase;
PDBTitle: crystal structure of tungsten cofactor synthesizing protein moab from2 pyrococcus furiosus
81c3agrB_



not modelled 7.1 33
PDB header:hydrolase
Chain: B: PDB Molecule:nucleoside triphosphate hydrolase;
PDBTitle: crystal structure of nucleoside triphosphate hydrolases from neospora2 caninum
82c4xpuA_



not modelled 6.9 19
PDB header:hydrolase
Chain: A: PDB Molecule:endonuclease v;
PDBTitle: the crystal structure of endov from e.coli
83d1wd5a_



not modelled 6.9 23
Fold:PRTase-like
Superfamily:PRTase-like
Family:Phosphoribosyltransferases (PRTases)
84c4oxxA_



not modelled 6.9 23
PDB header:electron transport
Chain: A: PDB Molecule:cindoxin;
PDBTitle: crystal structure of cindoxin, surface entropy reduction mutant
85c3gnnA_



not modelled 6.8 17
PDB header:transferase
Chain: A: PDB Molecule:nicotinate-nucleotide pyrophosphorylase;
PDBTitle: crystal structure of nicotinate-nucleotide pyrophosphorylase from2 burkholderi pseudomallei
86c5y4bA_



not modelled 6.7 15
PDB header:electron transport
Chain: A: PDB Molecule:bola-like protein 2;
PDBTitle: solution structure of yeast fra2
87d1uz5a3



not modelled 6.7 26
Fold:Molybdenum cofactor biosynthesis proteins
Superfamily:Molybdenum cofactor biosynthesis proteins
Family:MoeA central domain-like
88c5d5pC_



not modelled 6.7 26
PDB header:transferase
Chain: C: PDB Molecule:hcgb;
PDBTitle: hcgb from methanococcus maripaludis
89d1qapa1



not modelled 6.4 20
Fold:TIM beta/alpha-barrel
Superfamily:Nicotinate/Quinolinate PRTase C-terminal domain-like
Family:NadC C-terminal domain-like
90c2w36B_



not modelled 6.4 11
PDB header:hydrolase
Chain: B: PDB Molecule:endonuclease v;
PDBTitle: structures of endonuclease v with dna reveal initiation of2 deaminated adenine repair
91c5gvvF_



not modelled 6.3 6
PDB header:transferase
Chain: F: PDB Molecule:glycosyl transferase family 8;
PDBTitle: crystal structure of the glycosyltransferase glye in streptococcus2 pneumoniae tigr4
92d1x9aa_



not modelled 6.1 8
Fold:DsrEFH-like
Superfamily:DsrEFH-like
Family:DsrH-like
93c3igfB_



not modelled 6.0 23
PDB header:atp binding protein
Chain: B: PDB Molecule:all4481 protein;
PDBTitle: crystal structure of the all4481 protein from nostoc sp. pcc 7120,2 northeast structural genomics consortium target nsr300
94d2d1pc1



not modelled 5.8 20
Fold:DsrEFH-like
Superfamily:DsrEFH-like
Family:DsrH-like
95c5kbxB_



not modelled 5.8 7
PDB header:signaling protein
Chain: B: PDB Molecule:osmolarity two-component system protein ssk1;
PDBTitle: co-crystal structure of the saccharomyces cerevisiae histidine2 phosphotransfer signaling protein ypd1 and the receiver domain of its3 downstream response regulator ssk1
96c5xyiM_



not modelled 5.8 15
PDB header:ribosome
Chain: M: PDB Molecule:ribosomal protein l7ae, putative;
PDBTitle: small subunit of trichomonas vaginalis ribosome
97d1gq2a2



not modelled 5.7 14
Fold:Aminoacid dehydrogenase-like, N-terminal domain
Superfamily:Aminoacid dehydrogenase-like, N-terminal domain
Family:Malic enzyme N-domain
98c3j3aM_



not modelled 5.7 7
PDB header:ribosome
Chain: M: PDB Molecule:40s ribosomal protein s12;
PDBTitle: structure of the human 40s ribosomal proteins
99c3ga2A_



not modelled 5.7 11
PDB header:hydrolase
Chain: A: PDB Molecule:endonuclease v;
PDBTitle: crystal structure of the endonuclease_v (bsu36170) from bacillus2 subtilis, northeast structural genomics consortium target sr624

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