Phyre Home Retrieve Phyre Job Id
Emailmdejesus@rockefeller.edu
DescriptionRVBD0541c_(-)_633058_634407
DateFri Jul 26 01:50:09 BST 2019
Unique Job ID65869065c440dafa
SequenceVRIGRREGLA ... Download FASTA
Job Typenormal
Job Expiry

Summary 

Top model
Image coloured by rainbow N → C terminus
Model dimensions (Å):X:51.263 Y:46.623 Z:58.736
Model (left) based on template c5f15A_
Top template information
PDB header:transferase
Chain: A: PDB Molecule:4-amino-4-deoxy-l-arabinose (l-ara4n) transferase;
PDBTitle: crystal structure of arnt from cupriavidus metallidurans bound to2 undecaprenyl phosphate
Confidence and coverage
Confidence: 98.6% Coverage: 62%
280 residues ( 62% of your sequence) have been modelled with 98.6% confidence by the single highest scoring template.
Additional confident templates have been detected (see Domain analysis) which cover other regions of your sequence.
352 residues ( 78%) could be modelled at >90% confidence using multiple-templates.
You may wish to try resubmitting your sequence in "intensive" mode to model more of your sequence.
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Sequence analysis 

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Secondary structure and disorder prediction [Show] 

Domain analysis [Show] 

Detailed template information [Hide] 

 

#
Template Alignment Coverage3D Model Confidence
% i.d. Template Information
1c5f15A_



98.6 13
PDB header:transferase
Chain: A: PDB Molecule:4-amino-4-deoxy-l-arabinose (l-ara4n) transferase;
PDBTitle: crystal structure of arnt from cupriavidus metallidurans bound to2 undecaprenyl phosphate
2c3rceA_



96.7 12
PDB header:transferase/peptide
Chain: A: PDB Molecule:oligosaccharide transferase to n-glycosylate proteins;
PDBTitle: bacterial oligosaccharyltransferase pglb
3c6p2rB_



95.5 13
PDB header:transferase
Chain: B: PDB Molecule:dolichyl-phosphate-mannose--protein mannosyltransferase 2;
PDBTitle: structure of s. cerevisiae protein o-mannosyltransferase pmt1-pmt22 complex bound to the sugar donor
4c3wajA_



92.5 14
PDB header:transferase
Chain: A: PDB Molecule:transmembrane oligosaccharyl transferase;
PDBTitle: crystal structure of the archaeoglobus fulgidus2 oligosaccharyltransferase (o29867_arcfu) complex with zn and sulfate
5c6p25A_



91.8 15
PDB header:transferase
Chain: A: PDB Molecule:dolichyl-phosphate-mannose--protein mannosyltransferase 1;
PDBTitle: structure of s. cerevisiae protein o-mannosyltransferase pmt1-pmt22 complex bound to the sugar donor and a peptide acceptor
6c6eznF_



88.1 11
PDB header:membrane protein
Chain: F: PDB Molecule:dolichyl-diphosphooligosaccharide--protein
PDBTitle: cryo-em structure of the yeast oligosaccharyltransferase (ost) complex
7c6adqP_



21.4 19
PDB header:electron transport
Chain: P: PDB Molecule:prokaryotic respiratory supercomplex associate factor 1
PDBTitle: respiratory complex ciii2civ2sod2 from mycobacterium smegmatis
8c5zcrB_



9.4 18
PDB header:hydrolase
Chain: B: PDB Molecule:maltooligosyl trehalose synthase;
PDBTitle: dsm5389 glycosyltrehalose synthase
9c5gxwB_



7.8 44
PDB header:protein binding
Chain: B: PDB Molecule:peptide from nuclear mitotic apparatus protein 1;
PDBTitle: importin and numa complex
10c2wa0A_



6.7 15
PDB header:immune system
Chain: A: PDB Molecule:melanoma-associated antigen 4;
PDBTitle: crystal structure of the human magea4
11c3nw0B_



6.5 17
PDB header:metal binding protein
Chain: B: PDB Molecule:melanoma-associated antigen g1;
PDBTitle: crystal structure of mageg1 and nse1 complex
12c2lx0A_



5.9 42
PDB header:membrane protein
Chain: A: PDB Molecule:membrane fusion protein p14;
PDBTitle: arced helix (arch) nmr structure of the reovirus p14 fusion-associated2 small transmembrane (fast) protein transmembrane domain (tmd) in3 dodecyl phosphocholine (dpc) micelles
13c6cfwG_



5.3 12
PDB header:membrane protein
Chain: G: PDB Molecule:monovalent cation/h+ antiporter subunit c;
PDBTitle: cryoem structure of a respiratory membrane-bound hydrogenase

Binding site prediction 

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Transmembrane helix prediction 

Transmembrane helices have been predicted in your sequence to adopt the topology shown below