Phyre Home Retrieve Phyre Job Id
Emailmdejesus@rockefeller.edu
DescriptionRVBD0543c_(-)_635576_635878
DateFri Jul 26 01:50:09 BST 2019
Unique Job ID309e8b8df9bda11a
SequenceVNRFLTSIVA ... Download FASTA
Job Typenormal
Job Expiry

Summary 

Top model
Image coloured by rainbow N → C terminus
Model dimensions (Å):X:43.833 Y:32.221 Z:36.251
Model (left) based on template c2kvcA_
Top template information
PDB header:unknown function
Chain: A: PDB Molecule:putative uncharacterized protein;
PDBTitle: solution structure of the mycobacterium tuberculosis protein rv0543c,2 a member of the duf3349 superfamily. seattle structural genomics3 center for infectious disease target mytud.17112.a
Confidence and coverage
Confidence:100.0% Coverage:100%
100 residues (100% of your sequence) have been modelled with 100.0% confidence by the single highest scoring template.
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Sequence analysis 

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Secondary structure and disorder prediction [Show] 

Domain analysis [Show] 

Detailed template information [Hide] 

 

#
Template Alignment Coverage3D Model Confidence
% i.d. Template Information
1c2kvcA_



100.0 99
PDB header:unknown function
Chain: A: PDB Molecule:putative uncharacterized protein;
PDBTitle: solution structure of the mycobacterium tuberculosis protein rv0543c,2 a member of the duf3349 superfamily. seattle structural genomics3 center for infectious disease target mytud.17112.a
2c2lkyA_



100.0 61
PDB header:structural genomics, unknown function
Chain: A: PDB Molecule:uncharacterized protein;
PDBTitle: solution structure of msmeg_1053, the second duf3349 annotated protein2 in the genome of mycobacterium smegmatis, seattle structural genomics3 center for infectious disease target mysma.17112.b
3c3ol4B_



100.0 41
PDB header:unknown function
Chain: B: PDB Molecule:putative uncharacterized protein;
PDBTitle: crystal structure of a putative uncharacterized protein from2 mycobacterium smegmatis, an ortholog of rv0543c
4c2m0nA_



100.0 42
PDB header:unknown function
Chain: A: PDB Molecule:putative uncharacterized protein;
PDBTitle: solution structure of a duf3349 annotated protein from mycobacterium2 abscessus, mab_3403c. seattle structural genomics center for3 infectious disease target myaba.17112.a.a2
5d1khda1



91.2 14
Fold:Methionine synthase domain-like
Superfamily:Nucleoside phosphorylase/phosphoribosyltransferase N-terminal domain
Family:Nucleoside phosphorylase/phosphoribosyltransferase N-terminal domain
6d1o17a1



90.5 12
Fold:Methionine synthase domain-like
Superfamily:Nucleoside phosphorylase/phosphoribosyltransferase N-terminal domain
Family:Nucleoside phosphorylase/phosphoribosyltransferase N-terminal domain
7d1v8ga1



88.1 16
Fold:Methionine synthase domain-like
Superfamily:Nucleoside phosphorylase/phosphoribosyltransferase N-terminal domain
Family:Nucleoside phosphorylase/phosphoribosyltransferase N-terminal domain
8d2tpta1



87.9 13
Fold:Methionine synthase domain-like
Superfamily:Nucleoside phosphorylase/phosphoribosyltransferase N-terminal domain
Family:Nucleoside phosphorylase/phosphoribosyltransferase N-terminal domain
9d1uoua1



87.2 19
Fold:Methionine synthase domain-like
Superfamily:Nucleoside phosphorylase/phosphoribosyltransferase N-terminal domain
Family:Nucleoside phosphorylase/phosphoribosyltransferase N-terminal domain
10d1brwa1



86.5 14
Fold:Methionine synthase domain-like
Superfamily:Nucleoside phosphorylase/phosphoribosyltransferase N-terminal domain
Family:Nucleoside phosphorylase/phosphoribosyltransferase N-terminal domain
11d1qksa1



81.3 21
Fold:Cytochrome c
Superfamily:Cytochrome c
Family:N-terminal (heme c) domain of cytochrome cd1-nitrite reductase
12d1hj3a1



80.5 33
Fold:Cytochrome c
Superfamily:Cytochrome c
Family:N-terminal (heme c) domain of cytochrome cd1-nitrite reductase
13d1e2rb1



73.8 21
Fold:Cytochrome c
Superfamily:Cytochrome c
Family:N-terminal (heme c) domain of cytochrome cd1-nitrite reductase
14c5tdyD_



73.7 17
PDB header:motor protein
Chain: D: PDB Molecule:flagellar motor switch protein flig;
PDBTitle: structure of cofolded flifc:flign complex from thermotoga maritima
15c1o17A_



71.5 13
PDB header:transferase
Chain: A: PDB Molecule:anthranilate phosphoribosyltransferase;
PDBTitle: anthranilate phosphoribosyl-transferase (trpd)
16c4hkmA_



70.4 12
PDB header:transferase
Chain: A: PDB Molecule:anthranilate phosphoribosyltransferase;
PDBTitle: crystal structure of an anthranilate phosphoribosyltransferase (target2 id nysgrc-016600) from xanthomonas campestris
17c2dsjA_



66.7 12
PDB header:transferase
Chain: A: PDB Molecule:pyrimidine-nucleoside (thymidine) phosphorylase;
PDBTitle: crystal structure of project id tt0128 from thermus thermophilus hb8
18d1nira1



64.4 22
Fold:Cytochrome c
Superfamily:Cytochrome c
Family:N-terminal (heme c) domain of cytochrome cd1-nitrite reductase
19d1ng6a_



64.0 17
Fold:GatB/YqeY motif
Superfamily:GatB/YqeY motif
Family:GatB/YqeY domain
20d1h9xa1



63.9 24
Fold:Cytochrome c
Superfamily:Cytochrome c
Family:N-terminal (heme c) domain of cytochrome cd1-nitrite reductase
21d1hzua1



not modelled 63.7 22
Fold:Cytochrome c
Superfamily:Cytochrome c
Family:N-terminal (heme c) domain of cytochrome cd1-nitrite reductase
22c3mk7F_



not modelled 63.7 21
PDB header:oxidoreductase
Chain: F: PDB Molecule:cytochrome c oxidase, cbb3-type, subunit p;
PDBTitle: the structure of cbb3 cytochrome oxidase
23c1khdD_



not modelled 63.6 11
PDB header:transferase
Chain: D: PDB Molecule:anthranilate phosphoribosyltransferase;
PDBTitle: crystal structure analysis of the anthranilate2 phosphoribosyltransferase from erwinia carotovora at 1.9 resolution3 (current name, pectobacterium carotovorum)
24c6f6jC_



not modelled 62.7 32
PDB header:oxidoreductase
Chain: C: PDB Molecule:l-lysine 3-hydroxylase;
PDBTitle: crystal structure of the fe(ii)/alpha-ketoglutarate dependent2 dioxygenase kdo1 with fe(ii)/succinate/(3s)-3-hydroxy-l-lysine
25c2gbbA_



not modelled 62.2 22
PDB header:isomerase
Chain: A: PDB Molecule:putative chorismate mutase;
PDBTitle: crystal structure of secreted chorismate mutase from yersinia pestis
26c4ga5H_



not modelled 62.1 17
PDB header:transferase
Chain: H: PDB Molecule:putative thymidine phosphorylase;
PDBTitle: crystal structure of amp phosphorylase c-terminal deletion mutant in2 the apo-form
27c3h5qA_



not modelled 54.7 10
PDB header:transferase
Chain: A: PDB Molecule:pyrimidine-nucleoside phosphorylase;
PDBTitle: crystal structure of a putative pyrimidine-nucleoside phosphorylase2 from staphylococcus aureus
28c2zxyA_



not modelled 53.5 26
PDB header:oxygen binding, transport protein
Chain: A: PDB Molecule:cytochrome c552;
PDBTitle: crystal structure of cytochrome c555 from aquifex aeolicus
29c1brwB_



not modelled 52.9 13
PDB header:transferase
Chain: B: PDB Molecule:protein (pyrimidine nucleoside phosphorylase);
PDBTitle: the crystal structure of pyrimidine nucleoside2 phosphorylase in a closed conformation
30c2j0fC_



not modelled 51.3 18
PDB header:transferase
Chain: C: PDB Molecule:thymidine phosphorylase;
PDBTitle: structural basis for non-competitive product inhibition in2 human thymidine phosphorylase: implication for drug design
31c1v8gB_



not modelled 48.6 16
PDB header:transferase
Chain: B: PDB Molecule:anthranilate phosphoribosyltransferase;
PDBTitle: crystal structure of anthranilate phosphoribosyltransferase2 (trpd) from thermus thermophilus hb8
32c6paxA_



not modelled 48.4 21
PDB header:gene regulation/dna
Chain: A: PDB Molecule:homeobox protein pax-6;
PDBTitle: crystal structure of the human pax-6 paired domain-dna2 complex reveals a general model for pax protein-dna3 interactions
33c1otpA_



not modelled 47.7 16
PDB header:phosphorylase
Chain: A: PDB Molecule:thymidine phosphorylase;
PDBTitle: structural and theoretical studies suggest domain movement produces an2 active conformation of thymidine phosphorylase
34c3hjlA_



not modelled 47.4 18
PDB header:proton transport
Chain: A: PDB Molecule:flagellar motor switch protein flig;
PDBTitle: the structure of full-length flig from aquifex aeolicus
35c1vquB_



not modelled 47.1 11
PDB header:transferase
Chain: B: PDB Molecule:anthranilate phosphoribosyltransferase 2;
PDBTitle: crystal structure of anthranilate phosphoribosyltransferase 22 (17130499) from nostoc sp. at 1.85 a resolution
36c2bpqB_



not modelled 45.5 17
PDB header:transferase
Chain: B: PDB Molecule:anthranilate phosphoribosyltransferase;
PDBTitle: anthranilate phosphoribosyltransferase (trpd) from2 mycobacterium tuberculosis (apo structure)
37c5wujB_



not modelled 44.0 20
PDB header:motor protein
Chain: B: PDB Molecule:flagellar motor switch protein flig;
PDBTitle: crystal structure of flif-flig complex from h. pylori
38c6ge2A_



not modelled 40.5 32
PDB header:hormone
Chain: A: PDB Molecule:exendin-4;
PDBTitle: exendin-4 based dual glp-1/glucagon receptor agonist
39d1dy7b1



not modelled 39.9 24
Fold:Cytochrome c
Superfamily:Cytochrome c
Family:N-terminal (heme c) domain of cytochrome cd1-nitrite reductase
40c1zswA_



not modelled 38.2 11
PDB header:structural genomics, unknown function
Chain: A: PDB Molecule:glyoxalase family protein;
PDBTitle: crystal structure of bacillus cereus metallo protein from glyoxalase2 family
41c4gtnA_



not modelled 37.8 13
PDB header:transferase
Chain: A: PDB Molecule:anthranilate phosphoribosyltransferase;
PDBTitle: structure of anthranilate phosphoribosyl transferase from2 acinetobacter baylyi
42c1h1oA_



not modelled 36.5 20
PDB header:electron transport
Chain: A: PDB Molecule:cytochrome c-552;
PDBTitle: acidithiobacillus ferrooxidans cytochrome c4 structure2 supports a complex-induced tuning of electron transfer
43c2m29A_



not modelled 35.9 13
PDB header:metal binding protein
Chain: A: PDB Molecule:calcium-binding protein 4;
PDBTitle: nmr structure of ca2+ bound cabp4 n-domain
44c5nofB_



not modelled 34.7 20
PDB header:transferase
Chain: B: PDB Molecule:anthranilate phosphoribosyltransferase;
PDBTitle: anthranilate phosphoribosyltransferase from thermococcus kodakaraensis
45c1jrjA_



not modelled 34.7 32
PDB header:hormone/growth factor
Chain: A: PDB Molecule:exendin-4;
PDBTitle: solution structure of exendin-4 in 30-vol% trifluoroethanol
46d1zswa2



not modelled 33.4 11
Fold:Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase
Superfamily:Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase
Family:BC1024-like
47c2zmeD_



not modelled 32.8 33
PDB header:protein transport
Chain: D: PDB Molecule:vacuolar protein-sorting-associated protein 25;
PDBTitle: integrated structural and functional model of the human escrt-ii2 complex
48c3oajA_



not modelled 32.1 31
PDB header:structural genomics, unknown function
Chain: A: PDB Molecule:putative ring-cleaving dioxygenase mhqo;
PDBTitle: crystal structure of putative dioxygenase from bacillus subtilis2 subsp. subtilis str. 168
49c5mxzA_



not modelled 32.0 31
PDB header:electron transport
Chain: A: PDB Molecule:cytochrome c-552 ks_3358;
PDBTitle: kustc0563 y40f mutant
50c3cuqD_



not modelled 32.0 33
PDB header:protein transport
Chain: D: PDB Molecule:vacuolar protein-sorting-associated protein 25;
PDBTitle: integrated structural and functional model of the human escrt-ii2 complex
51c5j1bB_



not modelled 31.9 18
PDB header:signaling protein
Chain: B: PDB Molecule:cell wall assembly regulator smi1;
PDBTitle: structure of the core domaine of knr4, an intrinsically disordered2 protein from saccharomyces cerevisiae - wt.
52c1wvoA_



not modelled 30.9 39
PDB header:transferase
Chain: A: PDB Molecule:sialic acid synthase;
PDBTitle: solution structure of rsgi ruh-029, an antifreeze protein2 like domain in human n-acetylneuraminic acid phosphate3 synthase gene.
53c4muoB_



not modelled 30.7 11
PDB header:dna binding protein
Chain: B: PDB Molecule:uncharacterized protein ybib;
PDBTitle: the trpd2 enzyme from e.coli: ybib
54c3g6iA_



not modelled 30.5 35
PDB header:unknown function
Chain: A: PDB Molecule:putative outer membrane protein, part of carbohydrate
PDBTitle: crystal structure of an outer membrane protein, part of a putative2 carbohydrate binding complex (bt_1022) from bacteroides3 thetaiotaomicron vpi-5482 at 1.93 a resolution
55c2xtsD_



not modelled 30.3 24
PDB header:oxidoreductase/electron transport
Chain: D: PDB Molecule:cytochrome;
PDBTitle: crystal structure of the sulfane dehydrogenase soxcd from paracoccus2 pantotrophus
56d1h1oa1



not modelled 29.5 13
Fold:Cytochrome c
Superfamily:Cytochrome c
Family:Two-domain cytochrome c
57c1c8aA_



not modelled 28.8 22
PDB header:antifreeze protein
Chain: A: PDB Molecule:protein (antifreeze protein type iii);
PDBTitle: nmr structure of intramolecular dimer antifreeze protein2 rd3, 40 sa structures
58c3ecjC_



not modelled 28.8 23
PDB header:oxidoreductase
Chain: C: PDB Molecule:protein (homoprotocatechuate 2,3-dioxygenase);
PDBTitle: structure of e323l mutant of homoprotocatechuate 2,3-dioxygenase from2 brevibacterium fuscum at 1.65a resolution
59d1c75a_



not modelled 28.3 26
Fold:Cytochrome c
Superfamily:Cytochrome c
Family:monodomain cytochrome c
60d1c8aa2



not modelled 27.9 22
Fold:beta-clip
Superfamily:AFP III-like domain
Family:AFP III-like domain
61d3nlaa_



not modelled 27.6 22
Fold:beta-clip
Superfamily:AFP III-like domain
Family:AFP III-like domain
62c6hwhj_



not modelled 27.3 26
PDB header:electron transport
Chain: J: PDB Molecule:co-purified unknown peptide built as polyala;
PDBTitle: structure of a functional obligate respiratory supercomplex from2 mycobacterium smegmatis
63c5xj0Y_



not modelled 27.2 22
PDB header:transferase/transcription
Chain: Y: PDB Molecule:gp76;
PDBTitle: t. thermophilus rna polymerase holoenzyme bound with gp39 and gp76
64c5n1tB_



not modelled 26.8 21
PDB header:oxidoreductase
Chain: B: PDB Molecule:cytochrome c;
PDBTitle: crystal structure of complex between flavocytochrome c and copper2 chaperone copc from t. paradoxus
65d1fcdc1



not modelled 25.8 10
Fold:Cytochrome c
Superfamily:Cytochrome c
Family:Two-domain cytochrome c
66c3omeE_



not modelled 25.8 15
PDB header:lyase
Chain: E: PDB Molecule:enoyl-coa hydratase;
PDBTitle: crystal structure of a probable enoyl-coa hydratase from mycobacterium2 smegmatis
67d1dvha_



not modelled 25.5 21
Fold:Cytochrome c
Superfamily:Cytochrome c
Family:monodomain cytochrome c
68d1xb4a1



not modelled 24.6 14
Fold:DNA/RNA-binding 3-helical bundle
Superfamily:"Winged helix" DNA-binding domain
Family:Vacuolar sorting protein domain
69d1a56a_



not modelled 23.6 19
Fold:Cytochrome c
Superfamily:Cytochrome c
Family:monodomain cytochrome c
70c4pwaA_



not modelled 23.6 21
PDB header:electron transport
Chain: A: PDB Molecule:putative cytochrome c;
PDBTitle: crystal structure of the c-type cytochrome soru from sinorhizobium2 meliloti
71c1rz4A_



not modelled 23.4 17
PDB header:biosynthetic protein
Chain: A: PDB Molecule:eukaryotic translation initiation factor 3 subunit 11;
PDBTitle: crystal structure of human eif3k
72d1kx7a_



not modelled 22.7 16
Fold:Cytochrome c
Superfamily:Cytochrome c
Family:monodomain cytochrome c
73c3uc9A_



not modelled 22.6 14
PDB header:recombination
Chain: A: PDB Molecule:increased recombination centers protein 6;
PDBTitle: crystal structure of yeast irc6p - a novel type of conserved clathrin2 accessory protein
74c4j20B_



not modelled 22.6 11
PDB header:oxidoreductase
Chain: B: PDB Molecule:cytochrome c-555;
PDBTitle: x-ray structure of the cytochrome c-554 from chlorobaculum tepidum
75c3elkA_



not modelled 22.4 7
PDB header:transcription regulator
Chain: A: PDB Molecule:putative transcriptional regulator ta0346;
PDBTitle: crystal structure of putative transcriptional regulator ta0346 from2 thermoplasma acidophilum
76c2k7bA_



not modelled 22.3 13
PDB header:metal binding protein
Chain: A: PDB Molecule:calcium-binding protein 1;
PDBTitle: nmr structure of mg2+-bound cabp1 n-domain
77d1opsa_



not modelled 22.3 22
Fold:beta-clip
Superfamily:AFP III-like domain
Family:AFP III-like domain
78c2x49A_



not modelled 21.5 16
PDB header:protein transport
Chain: A: PDB Molecule:invasion protein inva;
PDBTitle: crystal structure of the c-terminal domain of inva
79c3gr0D_



not modelled 21.2 31
PDB header:membrane protein
Chain: D: PDB Molecule:protein prgh;
PDBTitle: periplasmic domain of the t3ss inner membrane protein prgh from2 s.typhimurium (fragment 170-362)
80c6adqC_



not modelled 21.1 26
PDB header:electron transport
Chain: C: PDB Molecule:cytochrome bc1 complex cytochrome c subunit;
PDBTitle: respiratory complex ciii2civ2sod2 from mycobacterium smegmatis
81c2v7sA_



not modelled 20.9 15
PDB header:unknown function
Chain: A: PDB Molecule:probable conserved lipoprotein lppa;
PDBTitle: crystal structure of the putative lipoprotein lppa from2 mycobacterium tuberculosis
82d2pq3a1



not modelled 20.9 13
Fold:EF Hand-like
Superfamily:EF-hand
Family:Calmodulin-like
83d1ucsa_



not modelled 20.7 22
Fold:beta-clip
Superfamily:AFP III-like domain
Family:AFP III-like domain
84c6faqA_



not modelled 20.3 8
PDB header:dna binding protein
Chain: A: PDB Molecule:dna binding protein;
PDBTitle: structure of h. salinarum rosr (vng0258) grown from kbr
85c4a5pC_



not modelled 20.3 17
PDB header:protein transport
Chain: C: PDB Molecule:protein mxia;
PDBTitle: structure of the shigella flexneri mxia protein
86c3ek7A_



not modelled 20.2 20
PDB header:fluorescent protein
Chain: A: PDB Molecule:myosin light chain kinase, green fluorescent protein,
PDBTitle: calcium-saturated gcamp2 dimer
87c3deeA_



not modelled 20.2 12
PDB header:transcription
Chain: A: PDB Molecule:putative regulatory protein;
PDBTitle: crystal structure of a putative regulatory protein involved in2 transcription (ngo1945) from neisseria gonorrhoeae fa 1090 at 2.25 a3 resolution
88c3kblA_



not modelled 19.9 36
PDB header:protein binding
Chain: A: PDB Molecule:female germline-specific tumor suppressor gld-1;
PDBTitle: crystal structure of the gld-1 homodimerization domain from2 caenorhabditis elegans n169a mutant at 2.28 a resolution
89c2zzsW_



not modelled 19.8 20
PDB header:electron transport
Chain: W: PDB Molecule:
PDBTitle: crystal structure of cytochrome c554 from vibrio2 parahaemolyticus strain rimd2210633
90d1q0oa2



not modelled 19.5 9
Fold:Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase
Superfamily:Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase
Family:Extradiol dioxygenases
91c2wl9A_



not modelled 19.2 19
PDB header:oxidoreductase
Chain: A: PDB Molecule:catechol 2,3-dioxygenase;
PDBTitle: crystal structure of catechol 2,3-dioxygenase
92c3u0kA_



not modelled 19.2 13
PDB header:fluorescent protein
Chain: A: PDB Molecule:rcamp;
PDBTitle: crystal structure of the genetically encoded calcium indicator rcamp
93c4esbA_



not modelled 19.1 4
PDB header:transcription
Chain: A: PDB Molecule:transcriptional regulator, padr family;
PDBTitle: crystal structure of padr-like transcriptional regulator (bc4206) from2 bacillus cereus strain atcc 14579
94d2c8sa1



not modelled 19.0 19
Fold:Cytochrome c
Superfamily:Cytochrome c
Family:monodomain cytochrome c
95d1cc5a_



not modelled 18.7 36
Fold:Cytochrome c
Superfamily:Cytochrome c
Family:monodomain cytochrome c
96c4xxlA_



not modelled 18.7 9
PDB header:electron transport
Chain: A: PDB Molecule:cytochrome c class i;
PDBTitle: crystal structure of class 1 cytochrome mtod from sideroxydans2 lithotrophicus es-1
97c2dkjB_



not modelled 18.6 17
PDB header:transferase
Chain: B: PDB Molecule:serine hydroxymethyltransferase;
PDBTitle: crystal structure of t.th.hb8 serine hydroxymethyltransferase
98c5znhA_



not modelled 18.5 13
PDB header:oxidoreductase
Chain: A: PDB Molecule:catechol 2,3-dioxygenase, extradiol protein;
PDBTitle: catechol 2,3-dioxygenase with 4-methyl catechol from diaphorobacter sp2 ds2
99d1mpya1



not modelled 18.2 13
Fold:Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase
Superfamily:Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase
Family:Extradiol dioxygenases

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