Phyre Home Retrieve Phyre Job Id
Emailmdejesus@rockefeller.edu
DescriptionRVBD0545c_(pitA)_636213_637466
DateFri Jul 26 01:50:09 BST 2019
Unique Job ID8b649fbf065515fa
SequenceVNLQLFLLLI ... Download FASTA
Job Typenormal
Job Expiry

Summary 

Top model
Image coloured by rainbow N → C terminus
Model dimensions (Å):X:14.593 Y:49.075 Z:43.136
Model (left) based on template c2lnhC_
Top template information
PDB header:signaling protein/protein binding
Chain: C: PDB Molecule:secreted effector protein espf(u);
PDBTitle: enterohaemorrhagic e. coli (ehec) exploits a tryptophan switch to2 hijack host f-actin assembly
Confidence and coverage
Confidence: 56.6% Coverage: 6%
24 residues ( 6% of your sequence) have been modelled with 56.6% confidence by the single highest scoring template.
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Sequence analysis 

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Secondary structure and disorder prediction [Show] 

Domain analysis [Show] 

Detailed template information [Hide] 

 

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Template Alignment Coverage3D Model Confidence
% i.d. Template Information
1c2lnhC_



56.6 46
PDB header:signaling protein/protein binding
Chain: C: PDB Molecule:secreted effector protein espf(u);
PDBTitle: enterohaemorrhagic e. coli (ehec) exploits a tryptophan switch to2 hijack host f-actin assembly
2c2k9pA_



42.0 41
PDB header:membrane protein
Chain: A: PDB Molecule:pheromone alpha factor receptor;
PDBTitle: structure of tm1_tm2 in lppg micelles
3c4kppA_



42.0 14
PDB header:membrane protein
Chain: A: PDB Molecule:putative uncharacterized protein;
PDBTitle: crystal structure of h+/ca2+ exchanger cax
4c3t5xB_



41.8 44
PDB header:transcription
Chain: B: PDB Molecule:26s proteasome complex subunit dss1;
PDBTitle: pcid2:dss1 structure
5c2w2eA_



35.0 11
PDB header:membrane protein
Chain: A: PDB Molecule:aquaporin pip2-7 7;
PDBTitle: 1.15 angstrom crystal structure of p.pastoris aquaporin, aqy1, in a2 closed conformation at ph 3.5
6c5gjqY_



32.9 36
PDB header:hydrolase
Chain: Y: PDB Molecule:26s proteasome complex subunit dss1;
PDBTitle: structure of the human 26s proteasome bound to usp14-ubal
7d1j4na_



29.0 14
Fold:Aquaporin-like
Superfamily:Aquaporin-like
Family:Aquaporin-like
8c3eh4A_



25.9 14
PDB header:oxidoreductase
Chain: A: PDB Molecule:cytochrome c oxidase subunit 1;
PDBTitle: structure of the reduced form of cytochrome ba3 oxidase from thermus2 thermophilus
9c6gcsH_



22.8 17
PDB header:oxidoreductase
Chain: H: PDB Molecule:24-kda subunit (nuhm);
PDBTitle: cryo-em structure of respiratory complex i from yarrowia lipolytica
10d1h6ia_



20.5 15
Fold:Aquaporin-like
Superfamily:Aquaporin-like
Family:Aquaporin-like
11c6m97A_



19.8 27
PDB header:transport protein
Chain: A: PDB Molecule:chimera protein of high affinity copper uptake protein 1
PDBTitle: crystal structure of the high-affinity copper transporter ctr1
12c1iyjC_



18.0 44
PDB header:gene regulation/antitumor protein
Chain: C: PDB Molecule:deleted in split hand/split foot protein 1;
PDBTitle: structure of a brca2-dss1 complex
13d1xmea1



17.2 14
Fold:Cytochrome c oxidase subunit I-like
Superfamily:Cytochrome c oxidase subunit I-like
Family:Cytochrome c oxidase subunit I-like
14d2qlva1



16.3 22
Fold:TBP-like
Superfamily:KA1-like
Family:Ssp2 C-terminal domain-like
15c2kncA_



15.4 19
PDB header:cell adhesion
Chain: A: PDB Molecule:integrin alpha-iib;
PDBTitle: platelet integrin alfaiib-beta3 transmembrane-cytoplasmic2 heterocomplex
16c2ia2D_



13.9 7
PDB header:transcription
Chain: D: PDB Molecule:putative transcriptional regulator;
PDBTitle: the crystal structure of a putative transcriptional regulator rha061952 from rhodococcus sp. rha1
17c2b6pA_



13.7 14
PDB header:membrane protein
Chain: A: PDB Molecule:lens fiber major intrinsic protein;
PDBTitle: x-ray structure of lens aquaporin-0 (aqp0) (lens mip) in an open pore2 state
18d1f2ri_



13.1 26
Fold:beta-Grasp (ubiquitin-like)
Superfamily:CAD & PB1 domains
Family:CAD domain
19c2m59A_



13.1 33
PDB header:transferase
Chain: A: PDB Molecule:vascular endothelial growth factor receptor 2;
PDBTitle: spatial structure of dimeric vegfr2 membrane domain in dpc micelles
20c2m59B_



13.1 33
PDB header:transferase
Chain: B: PDB Molecule:vascular endothelial growth factor receptor 2;
PDBTitle: spatial structure of dimeric vegfr2 membrane domain in dpc micelles
21c4xydA_



not modelled 13.0 9
PDB header:oxidoreductase
Chain: A: PDB Molecule:nitric-oxide reductase subunit b;
PDBTitle: nitric oxide reductase from roseobacter denitrificans (rdnor)
22c3ld1A_



not modelled 11.8 24
PDB header:hydrolase
Chain: A: PDB Molecule:replicase polyprotein 1a;
PDBTitle: crystal structure of ibv nsp2a
23c6hwhB_



not modelled 11.6 33
PDB header:electron transport
Chain: B: PDB Molecule:ubiquinol-cytochrome c reductase iron-sulfur subunit;
PDBTitle: structure of a functional obligate respiratory supercomplex from2 mycobacterium smegmatis
24c2bbjB_



not modelled 10.7 19
PDB header:metal transport/membrane protein
Chain: B: PDB Molecule:divalent cation transport-related protein;
PDBTitle: crystal structure of the cora mg2+ transporter
25c3aygA_



not modelled 10.6 9
PDB header:oxidoreductase
Chain: A: PDB Molecule:nitric oxide reductase;
PDBTitle: crystal structure of nitric oxide reductase complex with hqno
26c5l6nI_



not modelled 10.5 42
PDB header:hydrolase
Chain: I: PDB Molecule:thrombin inhibitor madanin 1;
PDBTitle: disulfated madanin-thrombin complex
27c1ymgA_



not modelled 10.1 14
PDB header:membrane protein
Chain: A: PDB Molecule:lens fiber major intrinsic protein;
PDBTitle: the channel architecture of aquaporin o at 2.2 angstrom resolution
28d1ymga1



not modelled 10.1 14
Fold:Aquaporin-like
Superfamily:Aquaporin-like
Family:Aquaporin-like
29c5sxpG_



not modelled 9.3 42
PDB header:signaling protein/ligase
Chain: G: PDB Molecule:e3 ubiquitin-protein ligase itchy homolog;
PDBTitle: structural basis for the interaction between itch prr and beta-pix
30c2jofA_



not modelled 9.3 36
PDB header:de novo protein
Chain: A: PDB Molecule:trp-cage;
PDBTitle: the trp-cage: optimizing the stability of a globular2 miniprotein
31c4v19U_



not modelled 9.2 25
PDB header:ribosome
Chain: U: PDB Molecule:mitoribosomal protein bl20m, mrpl20;
PDBTitle: structure of the large subunit of the mammalian mitoribosome, part 12 of 2
32d1vlaa_



not modelled 9.1 24
Fold:OsmC-like
Superfamily:OsmC-like
Family:YhfA-like
33d2f6ua1



not modelled 9.1 9
Fold:TIM beta/alpha-barrel
Superfamily:FMN-linked oxidoreductases
Family:FMN-linked oxidoreductases
34c4g7oN_



not modelled 8.7 26
PDB header:transcription, transferase/dna
Chain: N: PDB Molecule:dna-directed rna polymerase subunit beta';
PDBTitle: crystal structure of thermus thermophilus transcription initiation2 complex containing 2 nt of rna
35d1nmla2



not modelled 8.7 16
Fold:Cytochrome c
Superfamily:Cytochrome c
Family:Di-heme cytochrome c peroxidase
36c2nuuF_



not modelled 8.7 20
PDB header:transport protein/signaling protein
Chain: F: PDB Molecule:ammonia channel;
PDBTitle: regulating the escherichia coli ammonia channel: the crystal structure2 of the amtb-glnk complex
37c5levA_



not modelled 8.6 40
PDB header:transferase
Chain: A: PDB Molecule:udp-n-acetylglucosamine--dolichyl-phosphate n-
PDBTitle: crystal structure of human udp-n-acetylglucosamine-dolichyl-phosphate2 n-acetylglucosaminephosphotransferase (dpagt1) (v264g mutant)
38d2qtva4



not modelled 8.5 19
Fold:Gelsolin-like
Superfamily:C-terminal, gelsolin-like domain of Sec23/24
Family:C-terminal, gelsolin-like domain of Sec23/24
39c3a0aE_



not modelled 8.5 50
PDB header:structural protein
Chain: E: PDB Molecule:collagen-like peptide;
PDBTitle: structure of (ppg)4-opg-(ppg)4, monoclinic, twinned crystal
40c6humP_



not modelled 8.3 37
PDB header:proton transport
Chain: P: PDB Molecule:proton-translocating nadh-quinone dehydrogenase subunit p
PDBTitle: structure of the photosynthetic complex i from thermosynechococcus2 elongatus
41c4wqsD_



not modelled 8.2 26
PDB header:transferase/dna/rna
Chain: D: PDB Molecule:dna-directed rna polymerase subunit beta';
PDBTitle: thermus thermophilus rna polymerase backtracked complex
42c3a0aB_



not modelled 8.1 62
PDB header:structural protein
Chain: B: PDB Molecule:collagen-like peptide;
PDBTitle: structure of (ppg)4-opg-(ppg)4, monoclinic, twinned crystal
43d1s7ba_



not modelled 8.1 16
Fold:Multidrug resistance efflux transporter EmrE
Superfamily:Multidrug resistance efflux transporter EmrE
Family:Multidrug resistance efflux transporter EmrE
44c6eu6A_



not modelled 8.1 18
PDB header:membrane protein
Chain: A: PDB Molecule:ammonium transporter;
PDBTitle: sensor amt protein
45c2jmvA_



not modelled 8.1 46
PDB header:antiviral protein
Chain: A: PDB Molecule:scytovirin;
PDBTitle: solution structure of scytovirin refined against residual2 dipolar couplings
46c3jqom_



not modelled 8.1 32
PDB header:transport protein
Chain: M: PDB Molecule:traf protein;
PDBTitle: crystal structure of the outer membrane complex of a type iv secretion2 system
47c3jqoI_



not modelled 8.1 32
PDB header:transport protein
Chain: I: PDB Molecule:tran protein;
PDBTitle: crystal structure of the outer membrane complex of a type iv secretion2 system
48c3jqoF_



not modelled 8.1 32
PDB header:transport protein
Chain: F: PDB Molecule:tran protein;
PDBTitle: crystal structure of the outer membrane complex of a type iv secretion2 system
49c3jqog_



not modelled 8.1 32
PDB header:transport protein
Chain: G: PDB Molecule:traf protein;
PDBTitle: crystal structure of the outer membrane complex of a type iv secretion2 system
50c3jqoj_



not modelled 8.1 32
PDB header:transport protein
Chain: J: PDB Molecule:traf protein;
PDBTitle: crystal structure of the outer membrane complex of a type iv secretion2 system
51c3jqoC_



not modelled 8.1 32
PDB header:transport protein
Chain: C: PDB Molecule:tran protein;
PDBTitle: crystal structure of the outer membrane complex of a type iv secretion2 system
52c1k87A_



not modelled 8.1 20
PDB header:oxidoreductase
Chain: A: PDB Molecule:proline dehydrogenase;
PDBTitle: crystal structure of e.coli puta (residues 1-669)
53d2vy4a1



not modelled 8.1 43
Fold:beta-beta-alpha zinc fingers
Superfamily:beta-beta-alpha zinc fingers
Family:CHHC finger
54c3jqoR_



not modelled 8.0 32
PDB header:transport protein
Chain: R: PDB Molecule:tran protein;
PDBTitle: crystal structure of the outer membrane complex of a type iv secretion2 system
55c3jqoO_



not modelled 7.9 32
PDB header:transport protein
Chain: O: PDB Molecule:tran protein;
PDBTitle: crystal structure of the outer membrane complex of a type iv secretion2 system
56c3jqod_



not modelled 7.9 32
PDB header:transport protein
Chain: D: PDB Molecule:traf protein;
PDBTitle: crystal structure of the outer membrane complex of a type iv secretion2 system
57c3jqoX_



not modelled 7.9 32
PDB header:transport protein
Chain: X: PDB Molecule:tran protein;
PDBTitle: crystal structure of the outer membrane complex of a type iv secretion2 system
58c3jqoa_



not modelled 7.9 32
PDB header:transport protein
Chain: A: PDB Molecule:traf protein;
PDBTitle: crystal structure of the outer membrane complex of a type iv secretion2 system
59c3zbiX_



not modelled 7.9 32
PDB header:cell adhesion
Chain: X: PDB Molecule:tran protein;
PDBTitle: fitting result in the o-layer of the subnanometer structure of the2 bacterial pkm101 type iv secretion system core complex digested with3 elastase
60c3zbiO_



not modelled 7.9 32
PDB header:cell adhesion
Chain: O: PDB Molecule:tran protein;
PDBTitle: fitting result in the o-layer of the subnanometer structure of the2 bacterial pkm101 type iv secretion system core complex digested with3 elastase
61c3zbiU_



not modelled 7.9 32
PDB header:cell adhesion
Chain: U: PDB Molecule:tran protein;
PDBTitle: fitting result in the o-layer of the subnanometer structure of the2 bacterial pkm101 type iv secretion system core complex digested with3 elastase
62c3zbid_



not modelled 7.9 32
PDB header:cell adhesion
Chain: D: PDB Molecule:traf protein;
PDBTitle: fitting result in the o-layer of the subnanometer structure of the2 bacterial pkm101 type iv secretion system core complex digested with3 elastase
63c3zbij_



not modelled 7.9 32
PDB header:cell adhesion
Chain: J: PDB Molecule:traf protein;
PDBTitle: fitting result in the o-layer of the subnanometer structure of the2 bacterial pkm101 type iv secretion system core complex digested with3 elastase
64c3zbiR_



not modelled 7.9 32
PDB header:cell adhesion
Chain: R: PDB Molecule:tran protein;
PDBTitle: fitting result in the o-layer of the subnanometer structure of the2 bacterial pkm101 type iv secretion system core complex digested with3 elastase
65c3zbim_



not modelled 7.9 32
PDB header:cell adhesion
Chain: M: PDB Molecule:traf protein;
PDBTitle: fitting result in the o-layer of the subnanometer structure of the2 bacterial pkm101 type iv secretion system core complex digested with3 elastase
66c3jqoL_



not modelled 7.9 32
PDB header:transport protein
Chain: L: PDB Molecule:tran protein;
PDBTitle: crystal structure of the outer membrane complex of a type iv secretion2 system
67c3zbiC_



not modelled 7.9 32
PDB header:cell adhesion
Chain: C: PDB Molecule:tran protein;
PDBTitle: fitting result in the o-layer of the subnanometer structure of the2 bacterial pkm101 type iv secretion system core complex digested with3 elastase
68c3zbiI_



not modelled 7.9 32
PDB header:cell adhesion
Chain: I: PDB Molecule:tran protein;
PDBTitle: fitting result in the o-layer of the subnanometer structure of the2 bacterial pkm101 type iv secretion system core complex digested with3 elastase
69c3zbiL_



not modelled 7.9 32
PDB header:cell adhesion
Chain: L: PDB Molecule:tran protein;
PDBTitle: fitting result in the o-layer of the subnanometer structure of the2 bacterial pkm101 type iv secretion system core complex digested with3 elastase
70c3zbia_



not modelled 7.9 32
PDB header:cell adhesion
Chain: A: PDB Molecule:traf protein;
PDBTitle: fitting result in the o-layer of the subnanometer structure of the2 bacterial pkm101 type iv secretion system core complex digested with3 elastase
71c3zbig_



not modelled 7.9 32
PDB header:cell adhesion
Chain: G: PDB Molecule:traf protein;
PDBTitle: fitting result in the o-layer of the subnanometer structure of the2 bacterial pkm101 type iv secretion system core complex digested with3 elastase
72c3zbip_



not modelled 7.9 32
PDB header:cell adhesion
Chain: P: PDB Molecule:traf protein;
PDBTitle: fitting result in the o-layer of the subnanometer structure of the2 bacterial pkm101 type iv secretion system core complex digested with3 elastase
73c3zbiF_



not modelled 7.9 32
PDB header:cell adhesion
Chain: F: PDB Molecule:tran protein;
PDBTitle: fitting result in the o-layer of the subnanometer structure of the2 bacterial pkm101 type iv secretion system core complex digested with3 elastase
74c4qtnB_



not modelled 7.9 17
PDB header:transport protein
Chain: B: PDB Molecule:nicotinamide riboside transporter pnuc;
PDBTitle: crystal structure of the vitamin b3 transporter pnuc
75c3jqoU_



not modelled 7.9 32
PDB header:transport protein
Chain: U: PDB Molecule:tran protein;
PDBTitle: crystal structure of the outer membrane complex of a type iv secretion2 system
76c3jqop_



not modelled 7.9 32
PDB header:transport protein
Chain: P: PDB Molecule:traf protein;
PDBTitle: crystal structure of the outer membrane complex of a type iv secretion2 system
77c2rmhA_



not modelled 7.8 38
PDB header:hormone
Chain: A: PDB Molecule:urocortin-3;
PDBTitle: human urocortin 3
78c2g7uB_



not modelled 7.8 11
PDB header:structural genomics, unknown function
Chain: B: PDB Molecule:transcriptional regulator;
PDBTitle: 2.3 a structure of putative catechol degradative operon regulator from2 rhodococcus sp. rha1
79c2bruC_



not modelled 7.8 42
PDB header:oxidoreductase
Chain: C: PDB Molecule:nad(p) transhydrogenase subunit beta;
PDBTitle: complex of the domain i and domain iii of escherichia coli2 transhydrogenase
80c5x22D_



not modelled 7.8 26
PDB header:transferase/dna
Chain: D: PDB Molecule:dna-directed rna polymerase subunit beta';
PDBTitle: crystal structure of thermus thermophilus transcription initiation2 complex with gpa and cmpcpp
81c3aoiN_



not modelled 7.7 26
PDB header:transcription, transferase/dna/rna
Chain: N: PDB Molecule:dna-directed rna polymerase subunit beta';
PDBTitle: rna polymerase-gfh1 complex (crystal type 2)
82d1jlia_



not modelled 7.6 45
Fold:4-helical cytokines
Superfamily:4-helical cytokines
Family:Short-chain cytokines
83c1ciiA_



not modelled 7.6 23
PDB header:transmembrane protein
Chain: A: PDB Molecule:colicin ia;
PDBTitle: colicin ia
84c1i6vD_



not modelled 7.4 26
PDB header:transcription
Chain: D: PDB Molecule:dna-directed rna polymerase;
PDBTitle: thermus aquaticus core rna polymerase-rifampicin complex
85d1i6vd_



not modelled 7.4 26
Fold:beta and beta-prime subunits of DNA dependent RNA-polymerase
Superfamily:beta and beta-prime subunits of DNA dependent RNA-polymerase
Family:RNA-polymerase beta-prime
86d1d4oa_



not modelled 7.3 42
Fold:DHS-like NAD/FAD-binding domain
Superfamily:DHS-like NAD/FAD-binding domain
Family:Transhydrogenase domain III (dIII)
87c3a0aF_



not modelled 7.3 62
PDB header:structural protein
Chain: F: PDB Molecule:collagen-like peptide;
PDBTitle: structure of (ppg)4-opg-(ppg)4, monoclinic, twinned crystal
88c4ymuC_



not modelled 7.3 19
PDB header:protein binding/transport protein
Chain: C: PDB Molecule:abc-type amino acid transport system, permease component;
PDBTitle: crystal structure of an amino acid abc transporter complex with2 arginines and atps
89c3r4kD_



not modelled 7.3 13
PDB header:dna binding protein
Chain: D: PDB Molecule:transcriptional regulator, iclr family;
PDBTitle: crystal structure of a putative iclr transcriptional regulator2 (tm1040_3717) from silicibacter sp. tm1040 at 2.46 a resolution
90c1pt9B_



not modelled 7.2 42
PDB header:oxidoreductase
Chain: B: PDB Molecule:nad(p) transhydrogenase, mitochondrial;
PDBTitle: crystal structure analysis of the diii component of transhydrogenase2 with a thio-nicotinamide nucleotide analogue
91c5khuQ_



not modelled 7.2 24
PDB header:cell cycle
Chain: Q: PDB Molecule:mitotic checkpoint serine/threonine-protein kinase bub1
PDBTitle: model of human anaphase-promoting complex/cyclosome (apc15 deletion2 mutant), in complex with the mitotic checkpoint complex (apc/c-cdc20-3 mcc) based on cryo em data at 4.8 angstrom resolution
92c6cceD_



not modelled 7.2 32
PDB header:transcription/dna/antibiotic
Chain: D: PDB Molecule:dna-directed rna polymerase subunit beta';
PDBTitle: crystal structure of a mycobacterium smegmatis rna polymerase2 transcription initiation complex with inhibitor kanglemycin a
93c3a0aA_



not modelled 7.2 62
PDB header:structural protein
Chain: A: PDB Molecule:collagen-like peptide;
PDBTitle: structure of (ppg)4-opg-(ppg)4, monoclinic, twinned crystal
94c6mdxA_



not modelled 7.1 40
PDB header:dna binding protein/dna
Chain: A: PDB Molecule:sprt-like domain-containing protein spartan;
PDBTitle: mechanism of protease dependent dpc repair
95d1pnoa_



not modelled 7.1 33
Fold:DHS-like NAD/FAD-binding domain
Superfamily:DHS-like NAD/FAD-binding domain
Family:Transhydrogenase domain III (dIII)
96c5xj0D_



not modelled 7.0 26
PDB header:transferase/transcription
Chain: D: PDB Molecule:dna-directed rna polymerase subunit beta';
PDBTitle: t. thermophilus rna polymerase holoenzyme bound with gp39 and gp76
97d1ynjd1



not modelled 7.0 26
Fold:beta and beta-prime subunits of DNA dependent RNA-polymerase
Superfamily:beta and beta-prime subunits of DNA dependent RNA-polymerase
Family:RNA-polymerase beta-prime
98c2o5jN_



not modelled 6.9 26
PDB header:transferase/dna-rna hybrid
Chain: N: PDB Molecule:dna-directed rna polymerase beta' chain;
PDBTitle: crystal structure of the t. thermophilus rnap polymerase elongation2 complex with the ntp substrate analog
99c3ajbB_



not modelled 6.8 55
PDB header:protein transport
Chain: B: PDB Molecule:peroxisomal biogenesis factor 19;
PDBTitle: crystal structure of human pex3p in complex with n-terminal pex19p2 peptide

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Transmembrane helix prediction 

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