Phyre Home Retrieve Phyre Job Id
Emailmdejesus@rockefeller.edu
DescriptionRVBD0550c_(-)_640641_640907
DateFri Jul 26 01:50:10 BST 2019
Unique Job IDd7e1e88b0afc47d4
SequenceLLSRRTKTIV ... Download FASTA
Job Typenormal
Job Expiry

Summary 

Top model
Image coloured by rainbow N → C terminus
Model dimensions (Å):X:20.487 Y:25.562 Z:24.710
Model (left) based on template c5yrzC_
Top template information
PDB header:antitoxin/hydrolase
Chain: C: PDB Molecule:hicb;
PDBTitle: toxin-antitoxin complex from streptococcus pneumoniae
Confidence and coverage
Confidence: 83.8% Coverage: 36%
32 residues ( 36% of your sequence) have been modelled with 83.8% confidence by the single highest scoring template.
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Sequence analysis 

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Secondary structure and disorder prediction [Show] 

Domain analysis [Show] 

Detailed template information [Hide] 

 

#
Template Alignment Coverage3D Model Confidence
% i.d. Template Information
1c5yrzC_



83.8 25
PDB header:antitoxin/hydrolase
Chain: C: PDB Molecule:hicb;
PDBTitle: toxin-antitoxin complex from streptococcus pneumoniae
2c4p7dA_



69.5 12
PDB header:toxin
Chain: A: PDB Molecule:antitoxin hicb3;
PDBTitle: antitoxin hicb3 crystal structure
3c6g1nB_



62.4 27
PDB header:antitoxin
Chain: B: PDB Molecule:antitoxin hicb;
PDBTitle: crystal structure of the burkholderia pseudomallei antitoxin hicb
4c6a6xC_



37.9 62
PDB header:toxin
Chain: C: PDB Molecule:antitoxin maze7;
PDBTitle: the crystal structure of the mtb maze-mazf-mt9 complex
5c5x3tA_



26.8 43
PDB header:antitoxin/toxin
Chain: A: PDB Molecule:antitoxin vapb26;
PDBTitle: vapbc from mycobacterium tuberculosis
6c3qd5B_



24.4 23
PDB header:isomerase
Chain: B: PDB Molecule:putative ribose-5-phosphate isomerase;
PDBTitle: crystal structure of a putative ribose-5-phosphate isomerase from2 coccidioides immitis solved by combined iodide ion sad and mr
7c2k5jB_



23.1 27
PDB header:structural genomics, unknown function
Chain: B: PDB Molecule:uncharacterized protein yiif;
PDBTitle: solution structure of protein yiif from shigella flexneri2 serotype 5b (strain 8401) . northeast structural genomics3 consortium target sft1
8c2ca9B_



23.0 26
PDB header:transcription
Chain: B: PDB Molecule:putative nickel-responsive regulator;
PDBTitle: apo-nikr from helicobacter pylori in closed trans-2 conformation
9c2bj3D_



20.2 24
PDB header:transcription
Chain: D: PDB Molecule:nickel responsive regulator;
PDBTitle: nikr-apo
10d2vvpa1



19.4 19
Fold:Ribose/Galactose isomerase RpiB/AlsB
Superfamily:Ribose/Galactose isomerase RpiB/AlsB
Family:Ribose/Galactose isomerase RpiB/AlsB
11c1q5vB_



17.5 28
PDB header:transcription
Chain: B: PDB Molecule:nickel responsive regulator;
PDBTitle: apo-nikr
12c1b4aA_



12.6 50
PDB header:repressor
Chain: A: PDB Molecule:arginine repressor;
PDBTitle: structure of the arginine repressor from bacillus stearothermophilus
13c2k29A_



12.4 40
PDB header:transcription
Chain: A: PDB Molecule:antitoxin relb;
PDBTitle: structure of the dbd domain of e. coli antitoxin relb
14c3e38A_



11.0 32
PDB header:hydrolase
Chain: A: PDB Molecule:two-domain protein containing predicted php-like metal-
PDBTitle: crystal structure of a two-domain protein containing predicted php-2 like metal-dependent phosphoesterase (bvu_3505) from bacteroides3 vulgatus atcc 8482 at 2.20 a resolution
15d2p5ka1



10.8 39
Fold:DNA/RNA-binding 3-helical bundle
Superfamily:"Winged helix" DNA-binding domain
Family:Arginine repressor (ArgR), N-terminal DNA-binding domain
16c4lfnD_



10.0 22
PDB header:isomerase
Chain: D: PDB Molecule:galactose-6-phosphate isomerase subunit b;
PDBTitle: crystal structure of d-galactose-6-phosphate isomerase in complex with2 d-ribulose
17d1v0da_



9.9 60
Fold:His-Me finger endonucleases
Superfamily:His-Me finger endonucleases
Family:Caspase-activated DNase, CAD (DffB, DFF40)
18c1v0dA_



9.9 60
PDB header:hydrolase
Chain: A: PDB Molecule:dna fragmentation factor 40 kda subunit;
PDBTitle: crystal structure of caspase-activated dnase (cad)
19c6mu0A_



9.8 24
PDB header:isomerase
Chain: A: PDB Molecule:probable ribose-5-phosphate isomerase b;
PDBTitle: crystal structure of ribose-5-phosphate isomerase b from mycoplasma2 genitalium with bound ribulose-5-phosphate
20c2k9iB_



8.7 40
PDB header:dna binding protein
Chain: B: PDB Molecule:uncharacterized protein orf56;
PDBTitle: nmr structure of plasmid copy control protein orf56 from sulfolobus2 islandicus
21c6fxwA_



not modelled 8.6 13
PDB header:isomerase
Chain: A: PDB Molecule:putative ribose 5-phosphate isomerase;
PDBTitle: structure of leishmania infantum type b ribose 5-phosphate isomerase
22c6ae9B_



not modelled 8.1 20
PDB header:hydrolase
Chain: B: PDB Molecule:probable protein phosphatase 2c 1;
PDBTitle: x-ray structure of the photosystem ii phosphatase pbcp
23c3shgB_



not modelled 7.8 75
PDB header:transferase/protein binding
Chain: B: PDB Molecule:vbha;
PDBTitle: vbht fic protein from bartonella schoenbuchensis in complex with vbha2 antitoxin
24c3qgaD_



not modelled 6.3 24
PDB header:hydrolase
Chain: D: PDB Molecule:fusion of urease beta and gamma subunits;
PDBTitle: 3.0 a model of iron containing urease urea2b2 from helicobacter2 mustelae
25d1ugpa_



not modelled 6.3 50
Fold:Nitrile hydratase alpha chain
Superfamily:Nitrile hydratase alpha chain
Family:Nitrile hydratase alpha chain
26c3v4gA_



not modelled 6.2 29
PDB header:dna binding protein
Chain: A: PDB Molecule:arginine repressor;
PDBTitle: 1.60 angstrom resolution crystal structure of an arginine repressor2 from vibrio vulnificus cmcp6
27c5aj3g_



not modelled 6.2 30
PDB header:ribosome
Chain: G: PDB Molecule:mitoribosomal protein us7m, mrps7;
PDBTitle: structure of the small subunit of the mammalian mitoribosome
28c4yh5B_



not modelled 6.2 22
PDB header:transferase
Chain: B: PDB Molecule:levoglucosan kinase;
PDBTitle: lipomyces starkeyi levoglucosan kinase bound to adp and manganese
29c1e9zA_



not modelled 5.4 24
PDB header:hydrolase
Chain: A: PDB Molecule:urease subunit alpha;
PDBTitle: crystal structure of helicobacter pylori urease
30c3skqA_



not modelled 5.4 25
PDB header:metal transport
Chain: A: PDB Molecule:mitochondrial distribution and morphology protein 38;
PDBTitle: mdm38 is a 14-3-3-like receptor and associates with the protein2 synthesis machinery at the inner mitochondrial membrane
31c3ereD_



not modelled 5.2 46
PDB header:dna binding protein/dna
Chain: D: PDB Molecule:arginine repressor;
PDBTitle: crystal structure of the arginine repressor protein from mycobacterium2 tuberculosis in complex with the dna operator
32c3m1pA_



not modelled 5.1 22
PDB header:isomerase
Chain: A: PDB Molecule:ribose 5-phosphate isomerase;
PDBTitle: structure of ribose 5-phosphate isomerase type b from trypanosoma2 cruzi, soaked with allose-6-phosphate
33c3k7pA_



not modelled 5.1 22
PDB header:isomerase
Chain: A: PDB Molecule:ribose 5-phosphate isomerase;
PDBTitle: structure of mutant of ribose 5-phosphate isomerase type b from2 trypanosoma cruzi.

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