Phyre Home Retrieve Phyre Job Id
Emailmdejesus@rockefeller.edu
DescriptionRVBD0551c_(fadD8)_641099_642814
DateFri Jul 26 01:50:10 BST 2019
Unique Job ID7f3086aa2e13b981
SequenceMSTAGDDAVG ... Download FASTA
Job Typenormal
Job Expiry

Summary 

Top model
Image coloured by rainbow N → C terminus
Model dimensions (Å):X:68.845 Y:71.178 Z:77.158
Model (left) based on template c6eqoB_
Top template information
PDB header:oxidoreductase
Chain: B: PDB Molecule:acetyl-coenzyme a synthetase;
PDBTitle: tri-functional propionyl-coa synthase of erythrobacter sp. nap1 with2 bound nadp+ and phosphomethylphosphonic acid adenylate ester
Confidence and coverage
Confidence:100.0% Coverage: 90%
512 residues ( 90% of your sequence) have been modelled with 100.0% confidence by the single highest scoring template.
Additional confident templates have been detected (see Domain analysis) which cover other regions of your sequence.
571 residues (100%) could be modelled at >90% confidence using multiple-templates.
You may wish to try resubmitting your sequence in "intensive" mode to model more of your sequence.
3D viewing
Interactive 3D view in JSmol
For other options to view your downloaded structure offline see the FAQ

Sequence analysis 

Download FASTA version

Secondary structure and disorder prediction [Show] 

Domain analysis [Show] 

Detailed template information [Hide] 

 

#
Template Alignment Coverage3D Model Confidence
% i.d. Template Information
1c6eqoB_



100.0 21
PDB header:oxidoreductase
Chain: B: PDB Molecule:acetyl-coenzyme a synthetase;
PDBTitle: tri-functional propionyl-coa synthase of erythrobacter sp. nap1 with2 bound nadp+ and phosphomethylphosphonic acid adenylate ester
2c5es8A_



100.0 19
PDB header:ligase
Chain: A: PDB Molecule:linear gramicidin synthetase subunit a;
PDBTitle: crystal structure of the initiation module of lgra in the thiolation2 state
3c6p1jA_



100.0 23
PDB header:biosynthetic protein
Chain: A: PDB Molecule:txo2;
PDBTitle: the structure of condensation and adenylation domains of teixobactin-2 producing nonribosomal peptide synthetase txo2 serine module
4c5gxdA_



100.0 22
PDB header:lyase
Chain: A: PDB Molecule:amp-dependent synthetase and ligase;
PDBTitle: structure of acryloyl-coa lyase prpe from dinoroseobacter shibae dfl2 12
5c5u89A_



100.0 26
PDB header:hydrolase/inhibitor
Chain: A: PDB Molecule:amino acid adenylation domain protein;
PDBTitle: crystal structure of a cross-module fragment from the dimodular nrps2 dhbf
6c5ja2A_



100.0 21
PDB header:ligase
Chain: A: PDB Molecule:enterobactin synthase component f;
PDBTitle: entf, a terminal nonribosomal peptide synthetase module bound to the2 non-native mbth-like protein pa2412
7c5ifiA_



100.0 19
PDB header:ligase
Chain: A: PDB Molecule:acetyl-coenzyme a synthetase;
PDBTitle: crystal structure of acetyl-coa synthetase in complex with adenosine-2 5'-propylphosphate from cryptococcus neoformans h99
8d1pg4a_



100.0 19
Fold:Acetyl-CoA synthetase-like
Superfamily:Acetyl-CoA synthetase-like
Family:Acetyl-CoA synthetase-like
9c2vsqA_



100.0 21
PDB header:ligase
Chain: A: PDB Molecule:surfactin synthetase subunit 3;
PDBTitle: structure of surfactin a synthetase c (srfa-c), a nonribosomal peptide2 synthetase termination module
10d1ry2a_



100.0 21
Fold:Acetyl-CoA synthetase-like
Superfamily:Acetyl-CoA synthetase-like
Family:Acetyl-CoA synthetase-like
11c5wmmA_



100.0 23
PDB header:biosynthetic protein
Chain: A: PDB Molecule:nrps;
PDBTitle: crystal structure of an adenylation domain interrupted by a2 methylation domain (ama4) from nonribosomal peptide synthetase tios
12c4wd1A_



100.0 17
PDB header:ligase
Chain: A: PDB Molecule:acetoacetate-coa ligase;
PDBTitle: acetoacetyl-coa synthetase from streptomyces lividans
13c4wv3A_



100.0 24
PDB header:ligase/ligase inhibitor
Chain: A: PDB Molecule:anthranilate-coa ligase;
PDBTitle: crystal structure of the anthranilate coa ligase auaeii in complex2 with anthranoyl-amp
14c3e7wA_



100.0 18
PDB header:ligase
Chain: A: PDB Molecule:d-alanine--poly(phosphoribitol) ligase subunit 1;
PDBTitle: crystal structure of dlta: implications for the reaction mechanism of2 non-ribosomal peptide synthetase (nrps) adenylation domains
15d1mdba_



100.0 25
Fold:Acetyl-CoA synthetase-like
Superfamily:Acetyl-CoA synthetase-like
Family:Acetyl-CoA synthetase-like
16c5msdA_



100.0 20
PDB header:oxidoreductase
Chain: A: PDB Molecule:carboxylic acid reductase;
PDBTitle: structure of the a domain of carboxylic acid reductase (car) from2 nocardia iowensis in complex with amp and benzoic acid
17c5ie2A_



100.0 24
PDB header:ligase
Chain: A: PDB Molecule:oxalate--coa ligase;
PDBTitle: crystal structure of a plant enzyme
18c4eatB_



100.0 22
PDB header:ligase
Chain: B: PDB Molecule:benzoate-coenzyme a ligase;
PDBTitle: crystal structure of a benzoate coenzyme a ligase
19c4zxiA_



100.0 20
PDB header:biosynthetic protein
Chain: A: PDB Molecule:tyrocidine synthetase 3;
PDBTitle: crystal structure of holo-ab3403 a four domain nonribosomal peptide2 synthetase bound to amp and glycine
20c4zxjA_



100.0 21
PDB header:biosynthetic protein
Chain: A: PDB Molecule:enterobactin synthase component f;
PDBTitle: crystal structure of holo-entf a nonribosomal peptide synthetase in2 the thioester-forming conformation
21c3vnqA_



not modelled 100.0 22
PDB header:ligase
Chain: A: PDB Molecule:nrps adenylation protein cytc1;
PDBTitle: co-crystal structure of nrps adenylation protein cytc1 with atp from2 streptomyces
22d3cw9a1



not modelled 100.0 22
Fold:Acetyl-CoA synthetase-like
Superfamily:Acetyl-CoA synthetase-like
Family:Acetyl-CoA synthetase-like
23c5mstA_



not modelled 100.0 19
PDB header:oxidoreductase
Chain: A: PDB Molecule:thioester reductase domain-containing protein;
PDBTitle: structure of the a domain of carboxylic acid reductase (car) from2 segniliparus rugosus in complex with amp and a co-purified carboxylic3 acid
24c5wm7A_



not modelled 100.0 26
PDB header:ligase
Chain: A: PDB Molecule:salicylate-amp ligase;
PDBTitle: crystal structure of cahj in complex with amp
25c6h1bA_



not modelled 100.0 30
PDB header:ligase
Chain: A: PDB Molecule:fatty acid coa ligase;
PDBTitle: structure of amide bond synthetase mcba k483a mutant from2 marinactinospora thermotolerans
26c5x8gA_



not modelled 100.0 28
PDB header:ligase
Chain: A: PDB Molecule:2-succinylbenzoate--coa ligase;
PDBTitle: binary complex structure of a double mutant i454ra456k of o-2 succinylbenzoate coa synthetase (mene) from bacillus subtilis bound3 with its product analogue osb-ncoa at 1.90 angstrom
27c5mssA_



not modelled 100.0 19
PDB header:oxidoreductase
Chain: A: PDB Molecule:thioester reductase domain-containing protein;
PDBTitle: structure of the a-pcp didomain of carboxylic acid reductase (car)2 from segniliparus rugosus in complex with amp
28c4oxiA_



not modelled 100.0 18
PDB header:ligase
Chain: A: PDB Molecule:enterobactin synthetase component f-related protein;
PDBTitle: crystal structure of vibrio cholerae adenylation domain alme in2 complex with glycyl-adenosine-5'-phosphate
29c3eynB_



not modelled 100.0 21
PDB header:ligase
Chain: B: PDB Molecule:acyl-coenzyme a synthetase acsm2a;
PDBTitle: crystal structure of human acyl-coa synthetase medium-chain2 family member 2a (l64p mutation) in a complex with coa
30c3etcB_



not modelled 100.0 20
PDB header:ligase
Chain: B: PDB Molecule:amp-binding protein;
PDBTitle: 2.1 a structure of acyl-adenylate synthetase from methanosarcina2 acetivorans containing a link between lys256 and cys298
31c3ni2A_



not modelled 100.0 25
PDB header:ligase
Chain: A: PDB Molecule:4-coumarate:coa ligase;
PDBTitle: crystal structures and enzymatic mechanisms of a populus tomentosa 4-2 coumarate:coa ligase
32c3r44A_



not modelled 100.0 23
PDB header:ligase
Chain: A: PDB Molecule:fatty acyl coa synthetase fadd13 (fatty-acyl-coa
PDBTitle: mycobacterium tuberculosis fatty acyl coa synthetase
33c5u2aA_



not modelled 100.0 20
PDB header:ligase
Chain: A: PDB Molecule:amp-dependent synthetase and ligase;
PDBTitle: crystal structure of brucella canis acyl-coa synthetase
34c4ir7A_



not modelled 100.0 23
PDB header:transferase
Chain: A: PDB Molecule:long chain fatty acid coa ligase fadd10;
PDBTitle: crystal structure of mtb fadd10 in complex with dodecanoyl-amp
35c6ijbA_



not modelled 100.0 23
PDB header:ligase
Chain: A: PDB Molecule:amp-binding domain protein;
PDBTitle: structure of 3-methylmercaptopropionate coa ligase mutant k523a in2 complex with amp and mmpa
36c5e7qB_



not modelled 100.0 24
PDB header:transferase
Chain: B: PDB Molecule:acyl-coa synthetase;
PDBTitle: acyl-coa synthetase ptma2 from streptomyces platensis
37c3rg2H_



not modelled 100.0 23
PDB header:ligase
Chain: H: PDB Molecule:enterobactin synthase component e (ente), 2,3-dihydro-2,3-
PDBTitle: structure of a two-domain nrps fusion protein containing the ente2 adenylation domain and entb aryl-carrier protein from enterobactin3 biosynthesis
38c4dg8A_



not modelled 100.0 20
PDB header:ligase
Chain: A: PDB Molecule:pa1221;
PDBTitle: structure of pa1221, an nrps protein containing adenylation and pcp2 domains
39c5aplA_



not modelled 100.0 21
PDB header:transferase
Chain: A: PDB Molecule:adenylation domain;
PDBTitle: structure of the adenylation domain thr1 involved in the biosynthesis2 of 4-chlorothreonine in streptomyces sp. oh-5093, apo structure
40c5ey8D_



not modelled 100.0 23
PDB header:ligase
Chain: D: PDB Molecule:acyl-coa synthase;
PDBTitle: structure of fadd32 from mycobacterium smegmatis complexed to ampc20
41c5keiA_



not modelled 100.0 25
PDB header:ligase
Chain: A: PDB Molecule:2,3-dihydroxybenzoate-amp ligase;
PDBTitle: mycobacterium smegmatis mbta apo structure
42d1amua_



not modelled 100.0 18
Fold:Acetyl-CoA synthetase-like
Superfamily:Acetyl-CoA synthetase-like
Family:Acetyl-CoA synthetase-like
43c1amuB_



not modelled 100.0 18
PDB header:peptide synthetase
Chain: B: PDB Molecule:gramicidin synthetase 1;
PDBTitle: phenylalanine activating domain of gramicidin synthetase 12 in a complex with amp and phenylalanine
44c2v7bB_



not modelled 100.0 21
PDB header:ligase
Chain: B: PDB Molecule:benzoate-coenzyme a ligase;
PDBTitle: crystal structures of a benzoate coa ligase from2 burkholderia xenovorans lb400
45c4fuqD_



not modelled 100.0 23
PDB header:ligase
Chain: D: PDB Molecule:malonyl coa synthetase;
PDBTitle: crystal structure of apo matb from rhodopseudomonas palustris
46c6ac3B_



not modelled 100.0 24
PDB header:luminescent protein
Chain: B: PDB Molecule:red-bioluminescence eliciting luciferase;
PDBTitle: structure of a natural red emitting luciferase from phrixothrix hirtus2 (p3121 crystal form)
47c3tsyA_



not modelled 100.0 22
PDB header:ligase, transferase
Chain: A: PDB Molecule:fusion protein 4-coumarate--coa ligase 1, resveratrol
PDBTitle: 4-coumaroyl-coa ligase::stilbene synthase fusion protein
48c2d1tA_



not modelled 100.0 23
PDB header:oxidoreductase
Chain: A: PDB Molecule:luciferin 4-monooxygenase;
PDBTitle: crystal structure of the thermostable japanese firefly2 luciferase red-color emission s286n mutant complexed with3 high-energy intermediate analogue
49c3gqwB_



not modelled 100.0 21
PDB header:ligase
Chain: B: PDB Molecule:fatty acid amp ligase;
PDBTitle: crystal structure of a fatty acid amp ligase from e. coli with an acyl2 adenylate product bound
50c4dg9A_



not modelled 100.0 21
PDB header:ligase/inhibitor
Chain: A: PDB Molecule:pa1221;
PDBTitle: structure of holo-pa1221, an nrps protein containing adenylation and2 pcp domains bound to vinylsulfonamide inhibitor
51c3dhvA_



not modelled 100.0 17
PDB header:ligase
Chain: A: PDB Molecule:d-alanine-poly(phosphoribitol) ligase;
PDBTitle: crystal structure of dlta protein in complex with d-alanine2 adenylate
52c3kxwA_



not modelled 100.0 18
PDB header:ligase
Chain: A: PDB Molecule:saframycin mx1 synthetase b;
PDBTitle: the crystal structure of fatty acid amp ligase from legionella2 pneumophila
53c4r0mB_



not modelled 100.0 20
PDB header:ligase
Chain: B: PDB Molecule:mcyg protein;
PDBTitle: structure of mcyg a-pcp complexed with phenylalanyl-adenylate
54d1lcia_



not modelled 100.0 20
Fold:Acetyl-CoA synthetase-like
Superfamily:Acetyl-CoA synthetase-like
Family:Acetyl-CoA synthetase-like
55c4r0mA_



not modelled 100.0 21
PDB header:ligase
Chain: A: PDB Molecule:mcyg protein;
PDBTitle: structure of mcyg a-pcp complexed with phenylalanyl-adenylate
56c4d56A_



not modelled 100.0 24
PDB header:hydrolase
Chain: A: PDB Molecule:apnaa1;
PDBTitle: understanding bi-specificity of a-domains
57c3iteB_



not modelled 100.0 18
PDB header:ligase
Chain: B: PDB Molecule:sidn siderophore synthetase;
PDBTitle: the third adenylation domain of the fungal sidn non-ribosomal peptide2 synthetase
58c3l8cA_



not modelled 100.0 19
PDB header:ligase
Chain: A: PDB Molecule:d-alanine--poly(phosphoribitol) ligase subunit 1;
PDBTitle: structure of probable d-alanine--poly(phosphoribitol) ligase subunit-12 from streptococcus pyogenes
59c6akdA_



not modelled 100.0 22
PDB header:ligase
Chain: A: PDB Molecule:amp-dependent synthetase and ligase;
PDBTitle: crystal structure of idnl7
60c5jjqB_



not modelled 100.0 22
PDB header:ligase
Chain: B: PDB Molecule:amp-dependent synthetase and ligase;
PDBTitle: crystal structure of idnl1
61c5buqA_



not modelled 100.0 26
PDB header:ligase
Chain: A: PDB Molecule:2-succinylbenzoate--coa ligase;
PDBTitle: unliganded form of o-succinylbenzoate coenzyme a synthetase (mene)2 from bacillus subtilis, solved at 1.98 angstroms
62d1v25a_



not modelled 100.0 25
Fold:Acetyl-CoA synthetase-like
Superfamily:Acetyl-CoA synthetase-like
Family:Acetyl-CoA synthetase-like
63c3iplB_



not modelled 100.0 22
PDB header:ligase
Chain: B: PDB Molecule:2-succinylbenzoate--coa ligase;
PDBTitle: crystal structure of o-succinylbenzoic acid-coa ligase from2 staphylococcus aureus subsp. aureus mu50
64c3nyrA_



not modelled 100.0 25
PDB header:ligase
Chain: A: PDB Molecule:malonyl-coa ligase;
PDBTitle: malonyl-coa ligase ternary product complex with malonyl-coa and amp2 bound
65c3g7sA_



not modelled 100.0 21
PDB header:ligase
Chain: A: PDB Molecule:long-chain-fatty-acid--coa ligase (fadd-1);
PDBTitle: crystal structure of a long-chain-fatty-acid-coa ligase2 (fadd1) from archaeoglobus fulgidus
66c6ozvA_



not modelled 100.0 21
PDB header:biosynthetic protein
Chain: A: PDB Molecule:txo1;
PDBTitle: the structure of condensation and adenylation domains of teixobactin-2 producing nonribosomal peptide synthetase txo1 serine module in3 complex with amp
67c5c5hA_



not modelled 100.0 23
PDB header:ligase
Chain: A: PDB Molecule:2-succinylbenzoate--coa ligase;
PDBTitle: r195k e. coli mene with bound osb-ams
68c4gr5B_



not modelled 100.0 23
PDB header:ligase
Chain: B: PDB Molecule:non-ribosomal peptide synthetase;
PDBTitle: crystal structure of slgn1deltaasub in complex with ampcpp
69c3o82B_



not modelled 100.0 19
PDB header:ligase
Chain: B: PDB Molecule:peptide arylation enzyme;
PDBTitle: structure of base n-terminal domain from acinetobacter baumannii bound2 to 5'-o-[n-(2,3-dihydroxybenzoyl)sulfamoyl] adenosine
70c3o82A_



not modelled 100.0 19
PDB header:ligase
Chain: A: PDB Molecule:peptide arylation enzyme;
PDBTitle: structure of base n-terminal domain from acinetobacter baumannii bound2 to 5'-o-[n-(2,3-dihydroxybenzoyl)sulfamoyl] adenosine
71c4w8oA_



not modelled 100.0 17
PDB header:oxidoreductase
Chain: A: PDB Molecule:luciferase-like enzymeamp-coa-ligase;
PDBTitle: structure of the luciferase-like enzyme from the nonluminescent2 zophobas morio mealworm
72c3ivrA_



not modelled 100.0 24
PDB header:ligase
Chain: A: PDB Molecule:putative long-chain-fatty-acid coa ligase;
PDBTitle: crystal structure of putative long-chain-fatty-acid coa ligase from2 rhodopseudomonas palustris cga009
73c5jjpB_



not modelled 100.0 19
PDB header:ligase
Chain: B: PDB Molecule:nonribosomal peptide synthase;
PDBTitle: crystal structure of cmis6
74c3qyaA_



not modelled 100.0 22
PDB header:oxidoreductase
Chain: A: PDB Molecule:luciferase;
PDBTitle: crystal structure of a red-emitter mutant of lampyris turkestanicus2 luciferase
75c5n81B_



not modelled 100.0 20
PDB header:ligase
Chain: B: PDB Molecule:tyrocidine synthase 1;
PDBTitle: crystal structure of an engineered tyca variant in complex with an o-2 propargyl-beta-tyr-amp analog
76c5oe3C_



not modelled 100.0 18
PDB header:ligase
Chain: C: PDB Molecule:anthranilate--coa ligase;
PDBTitle: crystal structure of the n-terminal domain of pqsa in complex with2 anthraniloyl-amp (crystal form 1)
77c4lgcA_



not modelled 100.0 17
PDB header:ligase
Chain: A: PDB Molecule:bile acid-coenzyme a ligase;
PDBTitle: crystal structure of a bile acid-coenzyme a ligase (baib) from2 clostridium scindens (vpi 12708) at 2.19 a resolution
78c3wv4B_



not modelled 100.0 23
PDB header:ligase
Chain: B: PDB Molecule:non-ribosomal peptide synthetase;
PDBTitle: crystal structure of vinn
79c3t5cA_



not modelled 100.0 21
PDB header:ligase
Chain: A: PDB Molecule:probable chain-fatty-acid-coa ligase fadd13;
PDBTitle: crystal structure of n-terminal domain of facl13 from mycobacterium2 tuberculosis in different space group c2
80c5burB_



not modelled 100.0 23
PDB header:ligase
Chain: B: PDB Molecule:2-succinylbenzoate--coa ligase;
PDBTitle: o-succinylbenzoate coenzyme a synthetase (mene) from bacillus2 subtilis, in complex with atp and magnesium ion
81c6abhG_



not modelled 100.0 19
PDB header:luminescent protein
Chain: G: PDB Molecule:red-bioluminescence eliciting luciferase;
PDBTitle: structure of a natural red emitting luciferase from phrixothrix hirtus2 (p1 crystal form)
82c5jjpC_



not modelled 100.0 20
PDB header:ligase
Chain: C: PDB Molecule:nonribosomal peptide synthase;
PDBTitle: crystal structure of cmis6
83c3e53A_



not modelled 100.0 22
PDB header:ligase
Chain: A: PDB Molecule:fatty-acid-coa ligase fadd28;
PDBTitle: crystal structure of n-terminal domain of a fatty acyl amp2 ligase faal28 from mycobacterium tuberculosis
84c2y4oA_



not modelled 100.0 21
PDB header:ligase
Chain: A: PDB Molecule:phenylacetate-coenzyme a ligase;
PDBTitle: crystal structure of paak2 in complex with phenylacetyl adenylate
85c4gs5A_



not modelled 100.0 19
PDB header:ligase
Chain: A: PDB Molecule:acyl-coa synthetase (amp-forming)/amp-acid ligase ii-like
PDBTitle: the crystal structure of acyl-coa synthetase (amp-forming)/amp-acid2 ligase ii-like protein from dyadobacter fermentans dsm 18053
86c2y27B_



not modelled 100.0 19
PDB header:ligase
Chain: B: PDB Molecule:phenylacetate-coenzyme a ligase;
PDBTitle: crystal structure of paak1 in complex with atp from burkholderia2 cenocepacia
87c3qovD_



not modelled 100.0 16
PDB header:ligase
Chain: D: PDB Molecule:phenylacetate-coenzyme a ligase;
PDBTitle: crystal structure of a hypothetical acyl-coa ligase (bt_0428) from2 bacteroides thetaiotaomicron vpi-5482 at 2.20 a resolution
88c3hguB_



not modelled 99.8 17
PDB header:biosynthetic protein
Chain: B: PDB Molecule:ehpf;
PDBTitle: structure of phenazine antibiotic biosynthesis protein
89c3laxA_



not modelled 99.7 20
PDB header:ligase
Chain: A: PDB Molecule:phenylacetate-coenzyme a ligase;
PDBTitle: the crystal structure of a domain of phenylacetate-coenzyme2 a ligase from bacteroides vulgatus atcc 8482
90c4eplA_



not modelled 98.3 16
PDB header:ligase
Chain: A: PDB Molecule:jasmonic acid-amido synthetase jar1;
PDBTitle: crystal structure of arabidopsis thaliana gh3.11 (jar1) in complex2 with ja-ile
91c5kodA_



not modelled 98.3 12
PDB header:ligase
Chain: A: PDB Molecule:indole-3-acetic acid-amido synthetase gh3.5;
PDBTitle: crystal structure of gh3.5 acyl acid amido synthetase from arabidopsis2 thaliana
92c4b2gB_



not modelled 97.8 11
PDB header:signaling protein
Chain: B: PDB Molecule:gh3-1 auxin conjugating enzyme;
PDBTitle: crystal structure of an indole-3-acetic acid amido synthase from vitis2 vinifera involved in auxin homeostasis
93c6avhA_



not modelled 97.7 11
PDB header:ligase, plant protein
Chain: A: PDB Molecule:gh3.15 acyl acid amido synthetase;
PDBTitle: gh3.15 acyl acid amido synthetase
94c4ewvB_



not modelled 96.4 11
PDB header:ligase
Chain: B: PDB Molecule:4-substituted benzoates-glutamate ligase gh3.12;
PDBTitle: crystal structure of gh3.12 in complex with ampcpp
95d2ayia1



not modelled 72.7 8
Fold:Thermophilic metalloprotease-like
Superfamily:Thermophilic metalloprotease-like
Family:Thermophilic metalloprotease (M29)
96c3smaD_



not modelled 65.9 18
PDB header:transferase
Chain: D: PDB Molecule:frbf;
PDBTitle: a new n-acetyltransferase fold in the structure and mechanism of the2 phosphonate biosynthetic enzyme frbf
97c6mb6A_



not modelled 64.4 20
PDB header:transferase
Chain: A: PDB Molecule:aac(3)-iiib protein;
PDBTitle: aac-iiib binary with coash
98c5ht0B_



not modelled 62.6 18
PDB header:transferase
Chain: B: PDB Molecule:aminoglycoside acetyltransferase hmb0005;
PDBTitle: crystal structure of an antibiotic_nat family aminoglycoside2 acetyltransferase hmb0038 from an uncultured soil metagenomic sample3 in complex with coenzyme a
99c5u18A_



not modelled 58.7 26
PDB header:transferase
Chain: A: PDB Molecule:n-3'' methyltransferase;
PDBTitle: crystal structure of a methyltransferase involved in the biosynthesis2 of gentamicin in complex with the geneticin
100c6bc3A_



not modelled 56.8 20
PDB header:transferase/antibiotic
Chain: A: PDB Molecule:aac 3-vi protein;
PDBTitle: cryo x-ray structure of sisomicin bound aac-via
101c4k2bA_



not modelled 55.9 20
PDB header:transferase
Chain: A: PDB Molecule:ntd biosynthesis operon protein ntda;
PDBTitle: crystal structure of ntda from bacillus subtilis in complex with the2 internal aldimine
102d1piwa2



not modelled 54.8 13
Fold:NAD(P)-binding Rossmann-fold domains
Superfamily:NAD(P)-binding Rossmann-fold domains
Family:Alcohol dehydrogenase-like, C-terminal domain
103d2nyga1



not modelled 53.5 18
Fold:TTHA0583/YokD-like
Superfamily:TTHA0583/YokD-like
Family:Aminoglycoside 3-N-acetyltransferase-like
104c3e4fB_



not modelled 53.4 16
PDB header:transferase
Chain: B: PDB Molecule:aminoglycoside n3-acetyltransferase;
PDBTitle: crystal structure of ba2930- a putative aminoglycoside n3-2 acetyltransferase from bacillus anthracis
105c6mn5A_



not modelled 52.2 22
PDB header:transferase/antibiotic
Chain: A: PDB Molecule:aminoglycoside n(3)-acetyltransferase, aac(3)-iva;
PDBTitle: crystal structure of aminoglycoside acetyltransferase aac(3)-iva,2 h154a mutant, in complex with gentamicin c1a
106c2jwlB_



not modelled 50.4 12
PDB header:membrane protein
Chain: B: PDB Molecule:protein tolr;
PDBTitle: solution structure of periplasmic domain of tolr from h.2 influenzae with saxs data
107d1kola2



not modelled 49.5 14
Fold:NAD(P)-binding Rossmann-fold domains
Superfamily:NAD(P)-binding Rossmann-fold domains
Family:Alcohol dehydrogenase-like, C-terminal domain
108c3ippA_



not modelled 46.0 10
PDB header:transferase
Chain: A: PDB Molecule:putative thiosulfate sulfurtransferase ynje;
PDBTitle: crystal structure of sulfur-free ynje
109c6raoI_



not modelled 45.5 14
PDB header:virus like particle
Chain: I: PDB Molecule:afp11;
PDBTitle: cryo-em structure of the anti-feeding prophage (afp) baseplate, 6-fold2 symmetrised
110c3u5rG_



not modelled 45.1 18
PDB header:structural genomics, unknown function
Chain: G: PDB Molecule:uncharacterized protein;
PDBTitle: crystal structure of a hypothetical protein smc02350 from2 sinorhizobium meliloti 1021
111c4z1oB_



not modelled 44.1 13
PDB header:transferase
Chain: B: PDB Molecule:phosphoribosyltransferase;
PDBTitle: hypoxanthine-guanine-xanthine phosphoribosyltransferase (hgxprt) from2 sulfolobus solfataricus in complex with alpha-3 phosphoribosylpyrophosphoric acid (prpp) and magnesium
112c1uarA_



not modelled 40.7 10
PDB header:transferase
Chain: A: PDB Molecule:rhodanese;
PDBTitle: crystal structure of rhodanese from thermus thermophilus hb8
113d1udxa3



not modelled 37.6 20
Fold:Obg GTP-binding protein C-terminal domain
Superfamily:Obg GTP-binding protein C-terminal domain
Family:Obg GTP-binding protein C-terminal domain
114c3bcxA_



not modelled 37.2 12
PDB header:transferase
Chain: A: PDB Molecule:cdp-6-deoxy-l-threo-d-glycero-4-hexulose-3-dehydrase;
PDBTitle: e1 dehydrase
115c5by4A_



not modelled 36.8 14
PDB header:protein transport
Chain: A: PDB Molecule:protein tolr;
PDBTitle: structure and function of the escherichia coli tol-pal stator protein2 tolr
116d1rjwa2



not modelled 36.0 13
Fold:NAD(P)-binding Rossmann-fold domains
Superfamily:NAD(P)-binding Rossmann-fold domains
Family:Alcohol dehydrogenase-like, C-terminal domain
117c2ywiA_



not modelled 34.3 16
PDB header:structural genomics, unknown function
Chain: A: PDB Molecule:hypothetical conserved protein;
PDBTitle: crystal structure of uncharacterized conserved protein from2 geobacillus kaustophilus
118c3eegB_



not modelled 34.1 9
PDB header:transferase
Chain: B: PDB Molecule:2-isopropylmalate synthase;
PDBTitle: crystal structure of a 2-isopropylmalate synthase from2 cytophaga hutchinsonii
119c2cw6B_



not modelled 33.7 15
PDB header:lyase
Chain: B: PDB Molecule:hydroxymethylglutaryl-coa lyase, mitochondrial;
PDBTitle: crystal structure of human hmg-coa lyase: insights into2 catalysis and the molecular basis for3 hydroxymethylglutaric aciduria
120c3olhA_



not modelled 33.0 5
PDB header:transferase
Chain: A: PDB Molecule:3-mercaptopyruvate sulfurtransferase;
PDBTitle: human 3-mercaptopyruvate sulfurtransferase

Binding site prediction 

Due to computational demand, binding site predictions are not run for batch jobs

If you want to predict binding sites, please manually submit your model of choice to 3DLigandSite

Transmembrane helix prediction 

Transmembrane helices have been predicted in your sequence to adopt the topology shown below