Phyre Home Retrieve Phyre Job Id
Emailmdejesus@rockefeller.edu
DescriptionRVBD0556_(-)_647962_648477
DateFri Jul 26 01:50:11 BST 2019
Unique Job ID1f263d6a0c6db37f
SequenceVISPKPLLHI ... Download FASTA
Job Typenormal
Job Expiry

Summary 

Top model
Image coloured by rainbow N → C terminus
Model dimensions (Å):X:54.476 Y:43.657 Z:27.717
Model (left) based on template c2qqpG_
Top template information
PDB header:virus
Chain: G: PDB Molecule:large capsid protein;
PDBTitle: crystal structure of authentic providence virus
Confidence and coverage
Confidence: 66.5% Coverage: 29%
49 residues ( 29% of your sequence) have been modelled with 66.5% confidence by the single highest scoring template.
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Sequence analysis 

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Secondary structure and disorder prediction [Show] 

Domain analysis [Show] 

Detailed template information [Hide] 

 

#
Template Alignment Coverage3D Model Confidence
% i.d. Template Information
1c2qqpG_
66.5 10
PDB header:virus
Chain: G: PDB Molecule:large capsid protein;
PDBTitle: crystal structure of authentic providence virus
2d1ohfa_
57.0 18
Fold:Nucleoplasmin-like/VP (viral coat and capsid proteins)
Superfamily:Positive stranded ssRNA viruses
Family:Tetraviridae-like VP
3c3k6oA_
55.1 19
PDB header:structural genomics, unknown function
Chain: A: PDB Molecule:uncharacterized protein duf1344;
PDBTitle: crystal structure of protein of unknown function duf13442 (yp_001299214.1) from bacteroides vulgatus atcc 8482 at 2.00 a3 resolution
4d1ohfc_
53.7 24
Fold:Nucleoplasmin-like/VP (viral coat and capsid proteins)
Superfamily:Positive stranded ssRNA viruses
Family:Tetraviridae-like VP
5c4pqxC_
40.8 13
PDB header:structural genomics, unknown function
Chain: C: PDB Molecule:uncharacterized protein;
PDBTitle: crystal structure of a nigd-like protein (baccac_02139) from2 bacteroides caccae atcc 43185 at 2.39 a resolution
6c3wknG_
39.8 29
PDB header:immune system
Chain: G: PDB Molecule:affinger p17;
PDBTitle: crystal structure of the artificial protein affinger p17 (af.p17)2 complexed with fc fragment of human igg
7c1jy2O_
39.3 39
PDB header:blood clotting
Chain: O: PDB Molecule:fibrinogen beta chain;
PDBTitle: crystal structure of the central region of bovine fibrinogen (e52 fragment) at 1.4 angstroms resolution
8c3db3A_
36.2 26
PDB header:ligase
Chain: A: PDB Molecule:e3 ubiquitin-protein ligase uhrf1;
PDBTitle: crystal structure of the tandem tudor domains of the e3 ubiquitin-2 protein ligase uhrf1 in complex with trimethylated histone h3-k93 peptide
9c3askC_
34.8 26
PDB header:ligase/dna binding protein
Chain: C: PDB Molecule:e3 ubiquitin-protein ligase uhrf1;
PDBTitle: structure of uhrf1 in complex with histone tail
10c6b9mC_
34.5 42
PDB header:transferase
Chain: C: PDB Molecule:e3 ubiquitin-protein ligase uhrf1;
PDBTitle: crystal structure of uhrf1 ttd domain in complex with the polybasic2 region
11c4tvrA_
34.2 37
PDB header:ligase
Chain: A: PDB Molecule:e3 ubiquitin-protein ligase uhrf2;
PDBTitle: tandem tudor and phd domains of uhrf2
12c3s6pC_
31.6 17
PDB header:virus
Chain: C: PDB Molecule:capsid protein;
PDBTitle: crystal structure of helicoverpa armigera stunt virus
13c1ohfB_
30.4 15
PDB header:virus
Chain: B: PDB Molecule:nudaurelia capensis omega virus capsid protein;
PDBTitle: the refined structure of nudaurelia capensis omega virus
14c2q6oB_
29.1 18
PDB header:biosynthetic protein
Chain: B: PDB Molecule:hypothetical protein;
PDBTitle: sall-y70t with sam and cl
15c3k0yA_
24.7 16
PDB header:toxin
Chain: A: PDB Molecule:putative toxin related protein;
PDBTitle: crystal structure of putative toxin related protein (yp_001303978.1)2 from parabacteroides distasonis atcc 8503 at 2.16 a resolution
16c2jx2A_
24.5 14
PDB header:transcription
Chain: A: PDB Molecule:negative elongation factor e;
PDBTitle: solution conformation of rna-bound nelf-e rrm
17c3f6zB_
23.1 29
PDB header:hydrolase
Chain: B: PDB Molecule:putative uncharacterized protein;
PDBTitle: crystal structure of pseudomonas aeruginosa mlic in complex2 with hen egg white lysozyme
18c4j8qA_
21.4 21
PDB header:structural genomics, unknown function
Chain: A: PDB Molecule:putative uncharacterized protein;
PDBTitle: crystal structure of a nigd-like protein (bf0700) from bacteroides2 fragilis nctc 9343 at 2.50 a resolution
19c2zbvC_
20.8 20
PDB header:structural genomics, unknown function
Chain: C: PDB Molecule:uncharacterized conserved protein;
PDBTitle: crystal structure of uncharacterized conserved protein from thermotoga2 maritima
20c2kpiA_
20.7 22
PDB header:structural genomics, unknown function
Chain: A: PDB Molecule:uncharacterized protein sco3027;
PDBTitle: solution nmr structure of streptomyces coelicolor sco30272 modeled with zn+2 bound, northeast structural genomics3 consortium target rr58
21c2e26A_
not modelled 19.8 11
PDB header:signaling protein
Chain: A: PDB Molecule:reelin;
PDBTitle: crystal structure of two repeat fragment of reelin
22c2a45H_
not modelled 19.4 60
PDB header:hydrolase/hydrolase inhibitor
Chain: H: PDB Molecule:fibrinogen beta chain;
PDBTitle: crystal structure of the complex between thrombin and the central "e"2 region of fibrin
23c2js4A_
not modelled 18.7 13
PDB header:structural genomics, unknown function
Chain: A: PDB Molecule:upf0434 protein bb2007;
PDBTitle: solution nmr structure of bordetella bronchiseptica protein2 bb2007. northeast structural genomics consortium target3 bor54
24c4gy5A_
not modelled 18.3 26
PDB header:ligase
Chain: A: PDB Molecule:e3 ubiquitin-protein ligase uhrf1;
PDBTitle: crystal structure of the tandem tudor domain and plant homeodomain of2 uhrf1 with histone h3k9me3
25c2ka3C_
not modelled 18.2 30
PDB header:structural protein
Chain: C: PDB Molecule:emilin-1;
PDBTitle: structure of emilin-1 c1q-like domain
26c3d0fA_
not modelled 17.2 23
PDB header:transferase
Chain: A: PDB Molecule:penicillin-binding 1 transmembrane protein mrca;
PDBTitle: structure of the big_1156.2 domain of putative penicillin-binding2 protein mrca from nitrosomonas europaea atcc 19718
27c1rqrA_
not modelled 17.0 20
PDB header:transferase
Chain: A: PDB Molecule:5'-fluoro-5'-deoxyadenosine synthase;
PDBTitle: crystal structure and mechanism of a bacterial fluorinating enzyme,2 product complex
28d1x4fa1
not modelled 16.4 24
Fold:Ferredoxin-like
Superfamily:RNA-binding domain, RBD
Family:Canonical RBD
29c4oumA_
not modelled 15.9 30
PDB header:signaling protein
Chain: A: PDB Molecule:caprin-2;
PDBTitle: crystal structure of human caprin-2 c1q domain
30d1gr3a_
not modelled 15.8 10
Fold:TNF-like
Superfamily:TNF-like
Family:TNF-like
31c1gr3A_
not modelled 15.8 10
PDB header:collagen
Chain: A: PDB Molecule:collagen x;
PDBTitle: structure of the human collagen x nc1 trimer
32c5hbaA_
not modelled 15.5 30
PDB header:immune system
Chain: A: PDB Molecule:uncharacterized protein;
PDBTitle: globular domain of zebrafish complement 1qa protein
33c4obyA_
not modelled 15.4 14
PDB header:ligase
Chain: A: PDB Molecule:arginine--trna ligase;
PDBTitle: crystal structure of e.coli arginyl-trna synthetase and ligand binding2 studies revealed key residues in arginine recognition
34c4r3zB_
not modelled 15.2 22
PDB header:protein binding/ligase
Chain: B: PDB Molecule:arginine--trna ligase, cytoplasmic;
PDBTitle: crystal structure of human argrs-glnrs-aimp1 complex
35d1kl9a2
not modelled 15.1 14
Fold:OB-fold
Superfamily:Nucleic acid-binding proteins
Family:Cold shock DNA-binding domain-like
36c4b03D_
not modelled 14.9 14
PDB header:virus
Chain: D: PDB Molecule:dengue virus 1 prm protein;
PDBTitle: 6a electron cryomicroscopy structure of immature dengue virus serotype2 1
37c1o91B_
not modelled 14.8 13
PDB header:structural protein
Chain: B: PDB Molecule:collagen alpha 1(viii) chain;
PDBTitle: crystal structure of a collagen viii nc1 domain trimer
38d1o91a_
not modelled 14.8 13
Fold:TNF-like
Superfamily:TNF-like
Family:TNF-like
39d1pk6a_
not modelled 14.7 40
Fold:TNF-like
Superfamily:TNF-like
Family:TNF-like
40c3c6rE_
not modelled 14.1 20
PDB header:virus
Chain: E: PDB Molecule:peptide pr;
PDBTitle: low ph immature dengue virus
41c3ixxE_
not modelled 13.9 30
PDB header:virus
Chain: E: PDB Molecule:peptide pr;
PDBTitle: the pseudo-atomic structure of west nile immature virus in complex2 with fab fragments of the anti-fusion loop antibody e53
42d1c3ha_
not modelled 13.8 20
Fold:TNF-like
Superfamily:TNF-like
Family:TNF-like
43d1pk6c_
not modelled 13.4 20
Fold:TNF-like
Superfamily:TNF-like
Family:TNF-like
44d1m5ha1
not modelled 13.4 50
Fold:Ferredoxin-like
Superfamily:Formylmethanofuran:tetrahydromethanopterin formyltransferase
Family:Formylmethanofuran:tetrahydromethanopterin formyltransferase
45c2jr6A_
not modelled 13.3 17
PDB header:structural genomics, unknown function
Chain: A: PDB Molecule:upf0434 protein nma0874;
PDBTitle: solution structure of upf0434 protein nma0874. northeast structural2 genomics target mr32
46c2zufA_
not modelled 13.2 30
PDB header:ligase/rna
Chain: A: PDB Molecule:arginyl-trna synthetase;
PDBTitle: crystal structure of pyrococcus horikoshii arginyl-trna2 synthetase complexed with trna(arg)
47c4bg0A_
not modelled 12.9 26
PDB header:cell adhesion
Chain: A: PDB Molecule:complement regulator-acquiring surface protein 2 (crasp-2
PDBTitle: crystal structure of complement factors h and fhl-1 binding protein2 bbh06 or crasp-2 from borrelia burgdorferi
48d1rqpa2
not modelled 12.9 24
Fold:Bacterial fluorinating enzyme, N-terminal domain
Superfamily:Bacterial fluorinating enzyme, N-terminal domain
Family:Bacterial fluorinating enzyme, N-terminal domain
49c4f3jA_
not modelled 12.9 20
PDB header:signaling protein
Chain: A: PDB Molecule:complement c1q tumor necrosis factor-related protein 5;
PDBTitle: crystal structure of trimeric gc1q domain of human c1qtnf5 associated2 with late-onset retinal macular degeneration
50d2jnya1
not modelled 12.9 9
Fold:Trm112p-like
Superfamily:Trm112p-like
Family:Trm112p-like
51d1bcoa1
not modelled 12.8 11
Fold:mu transposase, C-terminal domain
Superfamily:mu transposase, C-terminal domain
Family:mu transposase, C-terminal domain
52c3c6eC_
not modelled 12.8 20
PDB header:viral protein
Chain: C: PDB Molecule:prm;
PDBTitle: crystal structure of the precursor membrane protein- envelope protein2 heterodimer from the dengue 2 virus at neutral ph
53d2bz2a1
not modelled 12.3 15
Fold:Ferredoxin-like
Superfamily:RNA-binding domain, RBD
Family:Canonical RBD
54c2wh7A_
not modelled 12.2 31
PDB header:hydrolase
Chain: A: PDB Molecule:hyaluronidase-phage associated;
PDBTitle: the partial structure of a group a streptpcoccal phage-2 encoded tail fibre hyaluronate lyase hylp2
55c4douA_
not modelled 12.1 20
PDB header:hormone
Chain: A: PDB Molecule:adiponectin;
PDBTitle: crystal structure of a single-chain trimer of human adiponectin2 globular domain
56d1khba2
not modelled 12.0 16
Fold:PEP carboxykinase N-terminal domain
Superfamily:PEP carboxykinase N-terminal domain
Family:PEP carboxykinase N-terminal domain
57c6bj5F_
not modelled 11.6 24
PDB header:immunosuppressant
Chain: F: PDB Molecule:serine proteinase inhibitor 1;
PDBTitle: structure of the clinically used myxomaviral serine protease inhibitor2 1 (serp-1)
58c6bl5A_
not modelled 10.9 40
PDB header:viral protein
Chain: A: PDB Molecule:head decoration protein;
PDBTitle: head decoration protein from the hyperthermophilic phage p74-26
59d2pk7a1
not modelled 10.8 13
Fold:Trm112p-like
Superfamily:Trm112p-like
Family:Trm112p-like
60d1x4da1
not modelled 10.8 13
Fold:Ferredoxin-like
Superfamily:RNA-binding domain, RBD
Family:Canonical RBD
61c6epkB_
not modelled 10.7 30
PDB header:viral protein
Chain: B: PDB Molecule:precursor membrane protein;
PDBTitle: crystal structure of the precursor membrane protein-envelope protein2 heterodimer from the yellow fever virus
62c4d7yA_
not modelled 10.6 14
PDB header:signaling protein
Chain: A: PDB Molecule:c1q-related factor;
PDBTitle: crystal structure of mouse c1ql1 globular domain
63c3g4hB_
not modelled 10.6 6
PDB header:hydrolase
Chain: B: PDB Molecule:regucalcin;
PDBTitle: crystal structure of human senescence marker protein-30 (zinc bound)
64d2hf1a1
not modelled 10.3 9
Fold:Trm112p-like
Superfamily:Trm112p-like
Family:Trm112p-like
65d1ftra1
not modelled 9.9 40
Fold:Ferredoxin-like
Superfamily:Formylmethanofuran:tetrahydromethanopterin formyltransferase
Family:Formylmethanofuran:tetrahydromethanopterin formyltransferase
66c1m5hF_
not modelled 9.9 50
PDB header:transferase
Chain: F: PDB Molecule:formylmethanofuran--tetrahydromethanopterin
PDBTitle: formylmethanofuran:tetrahydromethanopterin2 formyltransferase from archaeoglobus fulgidus
67d2gcxa1
not modelled 9.7 17
Fold:SH3-like barrel
Superfamily:C-terminal domain of transcriptional repressors
Family:FeoA-like
68c2bvbA_
not modelled 9.7 11
PDB header:adhesion
Chain: A: PDB Molecule:micronemal protein 1;
PDBTitle: the c-terminal domain from micronemal protein 1 (mic1) from2 toxoplasma gondii
69c5xxuI_
not modelled 9.7 38
PDB header:ribosome
Chain: I: PDB Molecule:ribosomal protein es8;
PDBTitle: small subunit of toxoplasma gondii ribosome
70c2vovA_
not modelled 9.4 27
PDB header:metal-binding protein
Chain: A: PDB Molecule:surface-associated protein;
PDBTitle: an oxidized tryptophan facilitates copper-binding in2 methylococcus capsulatus secreted protein mope. the3 structure of wild-type mope to 1.35aa
71c5hkjA_
not modelled 9.4 40
PDB header:signaling protein
Chain: A: PDB Molecule:complement c1q subcomponent subunit a,complement c1q
PDBTitle: single chain recombinant globular head of the complement system2 protein c1q
72c3zey5_
not modelled 9.1 38
PDB header:ribosome
Chain: 5: PDB Molecule:40s ribosomal protein s8;
PDBTitle: high-resolution cryo-electron microscopy structure of the trypanosoma2 brucei ribosome
73c5lj3Y_
not modelled 8.8 29
PDB header:splicing
Chain: Y: PDB Molecule:u2 small nuclear ribonucleoprotein b'';
PDBTitle: structure of the core of the yeast spliceosome immediately after2 branching
74d1nyra3
not modelled 8.8 15
Fold:RRF/tRNA synthetase additional domain-like
Superfamily:ThrRS/AlaRS common domain
Family:Threonyl-tRNA synthetase (ThrRS), second 'additional' domain
75d1pk6b_
not modelled 8.6 20
Fold:TNF-like
Superfamily:TNF-like
Family:TNF-like
76d3brda1
not modelled 8.5 45
Fold:Immunoglobulin-like beta-sandwich
Superfamily:E set domains
Family:NF-kappa-B/REL/DORSAL transcription factors, C-terminal domain
77c2xzn2_
not modelled 8.4 38
PDB header:ribosome
Chain: 2: PDB Molecule:40s ribosomal protein s8;
PDBTitle: crystal structure of the eukaryotic 40s ribosomal2 subunit in complex with initiation factor 1. this file3 contains the 40s subunit and initiation factor for4 molecule 2
78c4rt5A_
not modelled 8.4 9
PDB header:oxidoreductase
Chain: A: PDB Molecule:glyoxalase/bleomycin resistance protein/dioxygenase;
PDBTitle: the crystal structure of a glyoxalase/bleomycin resistance2 protein/dioxygenase protein from planctomyces limnophilus dsm 3776
79c1f7uA_
not modelled 8.3 11
PDB header:ligase/rna
Chain: A: PDB Molecule:arginyl-trna synthetase;
PDBTitle: crystal structure of the arginyl-trna synthetase complexed with the2 trna(arg) and l-arg
80c3mhxB_
not modelled 8.2 25
PDB header:metal transport
Chain: B: PDB Molecule:putative ferrous iron transport protein a;
PDBTitle: crystal structure of stenotrophomonas maltophilia feoa complexed with2 zinc: a unique procaryotic sh3 domain protein possibly acting as a3 bacterial ferrous iron transport activating factor
81c3fo8D_
not modelled 8.2 25
PDB header:viral protein
Chain: D: PDB Molecule:tail sheath protein gp18;
PDBTitle: crystal structure of the bacteriophage t4 tail sheath protein,2 protease resistant fragment gp18pr
82d1x4ga1
not modelled 8.1 20
Fold:Ferredoxin-like
Superfamily:RNA-binding domain, RBD
Family:Canonical RBD
83d2f09a1
not modelled 8.1 15
Fold:Streptavidin-like
Superfamily:YdhA-like
Family:YdhA-like
84c5xyiI_
not modelled 7.8 43
PDB header:ribosome
Chain: I: PDB Molecule:40s ribosomal protein s8;
PDBTitle: small subunit of trichomonas vaginalis ribosome
85c2fhjD_
not modelled 7.8 40
PDB header:transferase
Chain: D: PDB Molecule:formylmethanofuran--tetrahydromethanopterin
PDBTitle: crystal structure of formylmethanofuran:2 tetrahydromethanopterin formyltransferase in complex with3 its coenzymes
86c3dlmA_
not modelled 7.7 15
PDB header:transferase
Chain: A: PDB Molecule:histone-lysine n-methyltransferase setdb1;
PDBTitle: crystal structure of tudor domain of human histone-lysine n-2 methyltransferase setdb1
87d2cpja1
not modelled 7.7 20
Fold:Ferredoxin-like
Superfamily:RNA-binding domain, RBD
Family:Canonical RBD
88c5kc5A_
not modelled 7.7 20
PDB header:signaling protein
Chain: A: PDB Molecule:cerebellin-1;
PDBTitle: crystal structure of the cbln1 c1q domain trimer
89d1m5sa1
not modelled 7.6 40
Fold:Ferredoxin-like
Superfamily:Formylmethanofuran:tetrahydromethanopterin formyltransferase
Family:Formylmethanofuran:tetrahydromethanopterin formyltransferase
90c4wiuA_
not modelled 7.6 26
PDB header:lyase,transferase
Chain: A: PDB Molecule:phosphoenolpyruvate carboxykinase [gtp];
PDBTitle: crystal structure of pepck (rv0211) from mycobacterium tuberculosis in2 complex with oxalate and mn2+
91c5gslB_
not modelled 7.6 12
PDB header:hydrolase
Chain: B: PDB Molecule:778aa long hypothetical beta-galactosidase;
PDBTitle: glycoside hydrolase a
92c1m5sC_
not modelled 7.5 40
PDB header:transferase
Chain: C: PDB Molecule:formylmethanofuran--tetrahydromethanopterin
PDBTitle: formylmethanofuran:tetrahydromethanopterin2 fromyltransferase from methanosarcina barkeri
93c3j3aI_
not modelled 7.4 50
PDB header:ribosome
Chain: I: PDB Molecule:40s ribosomal protein s8;
PDBTitle: structure of the human 40s ribosomal proteins
94c2ks1B_
not modelled 7.4 29
PDB header:transferase
Chain: B: PDB Molecule:epidermal growth factor receptor;
PDBTitle: heterodimeric association of transmembrane domains of erbb1 and erbb22 receptors enabling kinase activation
95d1f7ua2
not modelled 7.4 11
Fold:Adenine nucleotide alpha hydrolase-like
Superfamily:Nucleotidylyl transferase
Family:Class I aminoacyl-tRNA synthetases (RS), catalytic domain
96c3u5cI_
not modelled 7.2 36
PDB header:ribosome
Chain: I: PDB Molecule:40s ribosomal protein s8-a;
PDBTitle: the structure of the eukaryotic ribosome at 3.0 a resolution. this2 entry contains proteins of the 40s subunit, ribosome a
97d2awna1
not modelled 7.1 15
Fold:OB-fold
Superfamily:MOP-like
Family:ABC-transporter additional domain
98c4q2tB_
not modelled 7.0 10
PDB header:ligase
Chain: B: PDB Molecule:arginine--trna ligase, cytoplasmic;
PDBTitle: crystal structure of arginyl-trna synthetase complexed with l-arginine
99d1auda_
not modelled 6.9 14
Fold:Ferredoxin-like
Superfamily:RNA-binding domain, RBD
Family:Canonical RBD

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Transmembrane helix prediction 

Transmembrane helices have been predicted in your sequence to adopt the topology shown below