Phyre Home Retrieve Phyre Job Id
Emailmdejesus@rockefeller.edu
DescriptionRVBD0566c_(-)_657551_658042
DateFri Jul 26 01:50:12 BST 2019
Unique Job IDeb297e9356e4b7b8
SequenceMADSSFDIVS ... Download FASTA
Job Typenormal
Job Expiry

Summary 

Top model
Image coloured by rainbow N → C terminus
Model dimensions (Å):X:33.597 Y:28.611 Z:71.589
Model (left) based on template c1in0B_
Top template information
PDB header:structural genomics, unknown function
Chain: B: PDB Molecule:yajq protein;
PDBTitle: yajq protein (hi1034)
Confidence and coverage
Confidence:100.0% Coverage: 98%
159 residues ( 98% of your sequence) have been modelled with 100.0% confidence by the single highest scoring template.
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Sequence analysis 

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Domain analysis [Show] 

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#
Template Alignment Coverage3D Model Confidence
% i.d. Template Information
1c1in0B_
100.0 43
PDB header:structural genomics, unknown function
Chain: B: PDB Molecule:yajq protein;
PDBTitle: yajq protein (hi1034)
2c5b7wB_
100.0 40
PDB header:unknown function
Chain: B: PDB Molecule:upf0234 protein xc_3703;
PDBTitle: crystal structure of the yajq-family protein xc_3703 from xanthomonas2 campestris pv.campestris
3d1in0a1
100.0 29
Fold:Ferredoxin-like
Superfamily:YajQ-like
Family:YajQ-like
4d1in0a2
100.0 59
Fold:Ferredoxin-like
Superfamily:YajQ-like
Family:YajQ-like
5d1wiha_
69.0 23
Fold:RRF/tRNA synthetase additional domain-like
Superfamily:Ribosome recycling factor, RRF
Family:Ribosome recycling factor, RRF
6c2lvaA_
58.5 57
PDB header:hydrolase
Chain: A: PDB Molecule:ubiquitin carboxyl-terminal hydrolase 28;
PDBTitle: nmr solution structure of the n-terminal domain of human usp28,2 northeast structural genomics consortium target ht8470a
7d1wqga1
55.1 21
Fold:RRF/tRNA synthetase additional domain-like
Superfamily:Ribosome recycling factor, RRF
Family:Ribosome recycling factor, RRF
8c2muxA_
54.2 50
PDB header:hydrolase
Chain: A: PDB Molecule:ubiquitin carboxyl-terminal hydrolase 25;
PDBTitle: sumo2 non-covalently interacts with usp25 and downregulates its2 activity
9d1vqoe2
49.6 16
Fold:Ribosomal protein L6
Superfamily:Ribosomal protein L6
Family:Ribosomal protein L6
10c3aqoD_
49.3 17
PDB header:membrane protein
Chain: D: PDB Molecule:probable secdf protein-export membrane protein;
PDBTitle: structure and function of a membrane component secdf that enhances2 protein export
11c2kyzA_
46.3 26
PDB header:metal binding protein
Chain: A: PDB Molecule:heavy metal binding protein;
PDBTitle: nmr structure of heavy metal binding protein tm0320 from thermotoga2 maritima
12c4gfqA_
44.1 16
PDB header:translation
Chain: A: PDB Molecule:ribosome-recycling factor;
PDBTitle: 2.65 angstrom resolution crystal structure of ribosome recycling2 factor (frr) from bacillus anthracis
13d1ek8a_
44.0 16
Fold:RRF/tRNA synthetase additional domain-like
Superfamily:Ribosome recycling factor, RRF
Family:Ribosome recycling factor, RRF
14d1is1a_
42.5 23
Fold:RRF/tRNA synthetase additional domain-like
Superfamily:Ribosome recycling factor, RRF
Family:Ribosome recycling factor, RRF
15d1eh1a_
39.8 16
Fold:RRF/tRNA synthetase additional domain-like
Superfamily:Ribosome recycling factor, RRF
Family:Ribosome recycling factor, RRF
16c4alzA_
33.1 15
PDB header:membrane protein
Chain: A: PDB Molecule:yop proteins translocation protein d;
PDBTitle: the yersinia t3ss basal body component yscd reveals a different2 structural periplasmatic domain organization to known homologue prgh
17c5lq6A_
29.5 26
PDB header:immunosuppressant
Chain: A: PDB Molecule:virulence protein vsde;
PDBTitle: salmonella effector spvd - r161 variant
18c4djgA_
26.8 32
PDB header:protein binding
Chain: A: PDB Molecule:plectin-related protein;
PDBTitle: crystal structure of the coiled-coil 1 domain of actin-binding protein2 scab1
19c3ci9B_
24.1 10
PDB header:transcription
Chain: B: PDB Molecule:heat shock factor-binding protein 1;
PDBTitle: crystal structure of the human hsbp1
20d1yq2a1
21.0 18
Fold:Immunoglobulin-like beta-sandwich
Superfamily:beta-Galactosidase/glucuronidase domain
Family:beta-Galactosidase/glucuronidase domain
21c4mo0A_
not modelled 19.4 15
PDB header:translation
Chain: A: PDB Molecule:protein translation factor sui1 homolog;
PDBTitle: crystal structure of aif1 from methanocaldococcus jannaschii
22d1j2jb_
not modelled 19.3 29
Fold:Spectrin repeat-like
Superfamily:GAT-like domain
Family:GAT domain
23c4cvoA_
not modelled 19.2 46
PDB header:hydrolase
Chain: A: PDB Molecule:dna excision repair protein ercc-6;
PDBTitle: crystal structure of the n-terminal colied-coil domain of human dna2 excision repair protein ercc-6
24d1vpka2
not modelled 18.7 17
Fold:DNA clamp
Superfamily:DNA clamp
Family:DNA polymerase III, beta subunit
25d2if1a_
not modelled 18.5 17
Fold:eIF1-like
Superfamily:eIF1-like
Family:eIF1-like
26d1jz8a2
not modelled 18.5 33
Fold:Immunoglobulin-like beta-sandwich
Superfamily:beta-Galactosidase/glucuronidase domain
Family:beta-Galactosidase/glucuronidase domain
27c2jpiA_
not modelled 18.1 20
PDB header:structural genomics
Chain: A: PDB Molecule:hypothetical protein;
PDBTitle: chemical shift assignments of pa4090 from pseudomonas2 aeruginosa
28c5wceB_
not modelled 18.0 15
PDB header:transferase
Chain: B: PDB Molecule:dna polymerase iii subunit beta;
PDBTitle: caulobacter crescentus pol iii beta
29d1wxma1
not modelled 18.0 15
Fold:beta-Grasp (ubiquitin-like)
Superfamily:Ubiquitin-like
Family:Ras-binding domain, RBD
30d1nh2a1
not modelled 17.9 13
Fold:TBP-like
Superfamily:TATA-box binding protein-like
Family:TATA-box binding protein (TBP), C-terminal domain
31d1pvga2
not modelled 17.7 17
Fold:ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase
Superfamily:ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase
Family:DNA gyrase/MutL, N-terminal domain
32c3fryB_
not modelled 16.8 20
PDB header:hydrolase
Chain: B: PDB Molecule:probable copper-exporting p-type atpase a;
PDBTitle: crystal structure of the copa c-terminal metal binding domain
33d1hywa_
not modelled 16.4 29
Fold:gpW/XkdW-like
Superfamily:Head-to-tail joining protein W, gpW
Family:Head-to-tail joining protein W, gpW
34d1e32a1
not modelled 16.3 50
Fold:Double psi beta-barrel
Superfamily:ADC-like
Family:Cdc48 N-terminal domain-like
35c1x7fA_
not modelled 16.3 10
PDB header:structural genomics, unknown function
Chain: A: PDB Molecule:outer surface protein;
PDBTitle: crystal structure of an uncharacterized b. cereus protein
36c3ijmA_
not modelled 15.7 24
PDB header:structural genomics, unknown function
Chain: A: PDB Molecule:uncharacterized restriction endonuclease-like fold
PDBTitle: the structure of a restriction endonuclease-like fold superfamily2 protein from spirosoma linguale.
37c1bo1A_
not modelled 15.6 17
PDB header:transferase
Chain: A: PDB Molecule:protein (phosphatidylinositol phosphate kinase
PDBTitle: phosphatidylinositol phosphate kinase type ii beta
38d1bo1a_
not modelled 15.6 17
Fold:SAICAR synthase-like
Superfamily:SAICAR synthase-like
Family:Phosphatidylinositol phosphate kinase IIbeta, PIPK IIbeta
39d1x7fa2
not modelled 15.1 10
Fold:TIM beta/alpha-barrel
Superfamily:(Trans)glycosidases
Family:Outer surface protein, N-terminal domain
40d1ge9a_
not modelled 14.6 24
Fold:RRF/tRNA synthetase additional domain-like
Superfamily:Ribosome recycling factor, RRF
Family:Ribosome recycling factor, RRF
41d1dd5a_
not modelled 14.5 17
Fold:RRF/tRNA synthetase additional domain-like
Superfamily:Ribosome recycling factor, RRF
Family:Ribosome recycling factor, RRF
42c5nocA_
not modelled 14.5 18
PDB header:dna binding protein
Chain: A: PDB Molecule:stage 0 sporulation protein j;
PDBTitle: solution nmr structure of the c-terminal domain of parb (spo0j)
43c4tz7A_
not modelled 14.1 25
PDB header:transferase
Chain: A: PDB Molecule:phosphatidylinositol-4-phosphate 5-kinase, type i, alpha;
PDBTitle: crystal structure of type i phosphatidylinositol 4-phosphate 5-kinase2 alpha from zebrafish
44c1vpkA_
not modelled 13.2 14
PDB header:transferase
Chain: A: PDB Molecule:dna polymerase iii, beta subunit;
PDBTitle: crystal structure of dna polymerase iii, beta subunit (tm0262) from2 thermotoga maritima at 2.00 a resolution
45c2gk9D_
not modelled 13.0 27
PDB header:transferase
Chain: D: PDB Molecule:phosphatidylinositol-4-phosphate 5-kinase, type ii, gamma;
PDBTitle: human phosphatidylinositol-4-phosphate 5-kinase, type ii, gamma
46c4rkiA_
not modelled 12.8 10
PDB header:transferase
Chain: A: PDB Molecule:dna polymerase iii subunit beta;
PDBTitle: crystal structure of sliding beta clamp from helicobacter pylori
47c5zcyA_
not modelled 12.7 15
PDB header:translation
Chain: A: PDB Molecule:protein translation factor sui1 homolog;
PDBTitle: crystal structure of archaeal translation initiation factor 1 at 1.52 angstroms resolution
48c5uz5C_
not modelled 12.6 24
PDB header:nuclear protein/rna
Chain: C: PDB Molecule:u1 small nuclear ribonucleoprotein a,tap tag;
PDBTitle: s. cerevisiae u1 snrnp
49d1qnaa1
not modelled 12.5 13
Fold:TBP-like
Superfamily:TATA-box binding protein-like
Family:TATA-box binding protein (TBP), C-terminal domain
50c2ftcF_
not modelled 12.4 24
PDB header:ribosome
Chain: F: PDB Molecule:39s ribosomal protein l12, mitochondrial;
PDBTitle: structural model for the large subunit of the mammalian mitochondrial2 ribosome
51d1cdwa1
not modelled 11.3 13
Fold:TBP-like
Superfamily:TATA-box binding protein-like
Family:TATA-box binding protein (TBP), C-terminal domain
52c3fblA_
not modelled 11.2 50
PDB header:structural protein
Chain: A: PDB Molecule:putative uncharacterized protein;
PDBTitle: crystal structure of orf132 of the archaeal virus acidianus2 filamentous virus 1 (afv1)
53d1cc8a_
not modelled 10.9 13
Fold:Ferredoxin-like
Superfamily:HMA, heavy metal-associated domain
Family:HMA, heavy metal-associated domain
54c5dtcA_
not modelled 10.9 18
PDB header:protein binding
Chain: A: PDB Molecule:ribosome biogenesis protein ytm1;
PDBTitle: ubl structure
55c4y2iA_
not modelled 10.0 22
PDB header:metal transport
Chain: A: PDB Molecule:putative metal-binding transport protein;
PDBTitle: gold ion bound to golb
56d1ok7a2
not modelled 9.9 9
Fold:DNA clamp
Superfamily:DNA clamp
Family:DNA polymerase III, beta subunit
57c6gsiK_
not modelled 9.8 38
PDB header:virus
Chain: K: PDB Molecule:vp2;
PDBTitle: feline calicivirus strain f9 bound to a soluble ectodomain fragment of2 feline junctional adhesion molecule a - leading to assembly of a3 portal structure at a unique three-fold axis.
58d1jjcb4
not modelled 9.3 19
Fold:Ferredoxin-like
Superfamily:Anticodon-binding domain of PheRS
Family:Anticodon-binding domain of PheRS
59c6gy4B_
not modelled 9.3 21
PDB header:rna binding protein
Chain: B: PDB Molecule:protein bicaudal c homolog 1;
PDBTitle: crystal structure of the n-terminal kh domain of human bicc1
60c5mu4A_
not modelled 9.2 30
PDB header:viral protein
Chain: A: PDB Molecule:tail tubular protein a;
PDBTitle: tail tubular protein a of klebsiella pneumoniae bacteriophage kp32
61c1giyJ_
not modelled 9.1 40
PDB header:ribosome
Chain: J: PDB Molecule:50s ribosomal protein l7/l12;
PDBTitle: crystal structure of the ribosome at 5.5 a resolution. this2 file, 1giy, contains the 50s ribosome subunit. the 30s3 ribosome subunit, three trna, and mrna molecules are in the4 file 1gix
62c3lnuA_
not modelled 9.0 21
PDB header:isomerase
Chain: A: PDB Molecule:topoisomerase iv subunit b;
PDBTitle: crystal structure of pare subunit
63c3nzqB_
not modelled 8.9 15
PDB header:lyase
Chain: B: PDB Molecule:biosynthetic arginine decarboxylase;
PDBTitle: crystal structure of biosynthetic arginine decarboxylase adc (spea)2 from escherichia coli, northeast structural genomics consortium3 target er600
64c6gsiI_
not modelled 8.8 38
PDB header:virus
Chain: I: PDB Molecule:vp2;
PDBTitle: feline calicivirus strain f9 bound to a soluble ectodomain fragment of2 feline junctional adhesion molecule a - leading to assembly of a3 portal structure at a unique three-fold axis.
65c6ivsA_
not modelled 8.7 32
PDB header:transcription
Chain: A: PDB Molecule:anti-sigma-i factor rsgi1;
PDBTitle: solution structure of the n-terminal domain of the anti-sigma factor2 rsgi1 from clostridium thermocellum
66d1dd3a2
not modelled 8.5 40
Fold:ClpS-like
Superfamily:ClpS-like
Family:Ribosomal protein L7/12, C-terminal domain
67c2g0cA_
not modelled 8.4 15
PDB header:hydrolase
Chain: A: PDB Molecule:atp-dependent rna helicase dbpa;
PDBTitle: structure of the rna binding domain (residues 404-479) of the bacillus2 subtilis yxin protein
68c4b6ai_
not modelled 8.4 19
PDB header:ribosome
Chain: I: PDB Molecule:60s ribosomal protein l10;
PDBTitle: cryo-em structure of the 60s ribosomal subunit in complex2 with arx1 and rei1
69c2gya3_
not modelled 8.2 36
PDB header:ribosome
Chain: 3: PDB Molecule:50s ribosomal protein l7/l12;
PDBTitle: structure of the 50s subunit of a pre-translocational e. coli ribosome2 obtained by fitting atomic models for rna and protein components into3 cryo-em map emd-1056
70c4f6cA_
not modelled 8.1 12
PDB header:oxidoreductase
Chain: A: PDB Molecule:ausa reductase domain protein;
PDBTitle: crystal structure of aureusimine biosynthetic cluster reductase domain
71c2xznF_
not modelled 7.9 18
PDB header:ribosome
Chain: F: PDB Molecule:eif1;
PDBTitle: crystal structure of the eukaryotic 40s ribosomal2 subunit in complex with initiation factor 1. this file3 contains the 40s subunit and initiation factor for4 molecule 2
72d1ctfa_
not modelled 7.9 38
Fold:ClpS-like
Superfamily:ClpS-like
Family:Ribosomal protein L7/12, C-terminal domain
73c2yx5A_
not modelled 7.8 20
PDB header:structural genomics, unknown function
Chain: A: PDB Molecule:upf0062 protein mj1593;
PDBTitle: crystal structure of methanocaldococcus jannaschii purs, one of the2 subunits of formylglycinamide ribonucleotide amidotransferase in the3 purine biosynthetic pathway
74c1vw4c_
not modelled 7.8 14
PDB header:ribosome
Chain: C: PDB Molecule:
PDBTitle: structure of the yeast mitochondrial large ribosomal subunit
75c3j3bi_
not modelled 7.7 40
PDB header:ribosome
Chain: I: PDB Molecule:60s ribosomal protein l10-like;
PDBTitle: structure of the human 60s ribosomal proteins
76c6p0qA_
not modelled 7.5 26
PDB header:rna binding protein
Chain: A: PDB Molecule:ribosome biogenesis protein wdr12;
PDBTitle: crystal structure of ubiquitin-like domain of human wdr12
77d2cc6a1
not modelled 7.4 25
Fold:Dodecin subunit-like
Superfamily:Dodecin-like
Family:Dodecin-like
78c3n2oA_
not modelled 7.2 13
PDB header:lyase
Chain: A: PDB Molecule:biosynthetic arginine decarboxylase;
PDBTitle: x-ray crystal structure of arginine decarboxylase complexed with2 arginine from vibrio vulnificus
79d1vjea_
not modelled 7.2 26
Fold:LuxS/MPP-like metallohydrolase
Superfamily:LuxS/MPP-like metallohydrolase
Family:Autoinducer-2 production protein LuxS
80c3m0zD_
not modelled 7.1 29
PDB header:lyase
Chain: D: PDB Molecule:putative aldolase;
PDBTitle: crystal structure of putative aldolase from klebsiella pneumoniae.
81c3ke2A_
not modelled 7.1 27
PDB header:unknown function
Chain: A: PDB Molecule:uncharacterized protein yp_928783.1;
PDBTitle: crystal structure of a duf2131 family protein (sama_2911) from2 shewanella amazonensis sb2b at 2.50 a resolution
82c3k1tA_
not modelled 7.1 6
PDB header:ligase
Chain: A: PDB Molecule:glutamate--cysteine ligase gsha;
PDBTitle: crystal structure of putative gamma-glutamylcysteine synthetase2 (yp_546622.1) from methylobacillus flagellatus kt at 1.90 a3 resolution
83c1zuyB_
not modelled 7.0 20
PDB header:contractile protein
Chain: B: PDB Molecule:myosin-5 isoform;
PDBTitle: high-resolution structure of yeast myo5 sh3 domain
84c4a19Q_
not modelled 7.0 20
PDB header:ribosome
Chain: Q: PDB Molecule:60s ribosomal protein l36;
PDBTitle: t.thermophila 60s ribosomal subunit in complex with2 initiation factor 6. this file contains 26s rrna and3 proteins of molecule 2.
85c1d1rA_
not modelled 6.9 15
PDB header:structural genomics
Chain: A: PDB Molecule:hypothetical 11.4 kd protein ycih in pyrf-osmb
PDBTitle: nmr solution structure of the product of the e. coli ycih2 gene.
86d1d1ra_
not modelled 6.9 15
Fold:eIF1-like
Superfamily:eIF1-like
Family:eIF1-like
87c1mv4B_
not modelled 6.8 44
PDB header:de novo protein
Chain: B: PDB Molecule:tropomyosin 1 alpha chain;
PDBTitle: tm9a251-284: a peptide model of the c-terminus of a rat2 striated alpha tropomyosin
88c4jwhB_
not modelled 6.7 17
PDB header:transferase
Chain: B: PDB Molecule:trna (guanine(9)-n1)-methyltransferase;
PDBTitle: crystal structure of sptrm10(full length)-sah complex
89c3okqA_
not modelled 6.6 58
PDB header:protein binding
Chain: A: PDB Molecule:bud site selection protein 6;
PDBTitle: crystal structure of a core domain of yeast actin nucleation cofactor2 bud6
90c5mlpA_
not modelled 6.5 24
PDB header:ligase
Chain: A: PDB Molecule:uncharacterized protein;
PDBTitle: structure of cdps from rickettsiella grylli
91c4a54A_
not modelled 6.4 24
PDB header:rna binding protein/hydrolase
Chain: A: PDB Molecule:edc3;
PDBTitle: structural basis of the dcp1:dcp2 mrna decapping complex activation2 by edc3 and scd6
92d1rfza_
not modelled 6.4 10
Fold:YutG-like
Superfamily:YutG-like
Family:YutG-like
93c2zjq5_
not modelled 6.4 32
PDB header:ribosome
Chain: 5: PDB Molecule:50s ribosomal protein l7/l12;
PDBTitle: interaction of l7 with l11 induced by microccocin binding to the2 deinococcus radiodurans 50s subunit
94d2zjq51
not modelled 6.4 32
Fold:ClpS-like
Superfamily:ClpS-like
Family:Ribosomal protein L7/12, C-terminal domain
95c3izck_
not modelled 6.3 19
PDB header:ribosome
Chain: K: PDB Molecule:60s ribosomal protein rpl16 (l13p);
PDBTitle: localization of the large subunit ribosomal proteins into a 6.1 a2 cryo-em map of saccharomyces cerevisiae translating 80s ribosome
96c4tr6A_
not modelled 6.2 14
PDB header:dna binding protein
Chain: A: PDB Molecule:dna polymerase iii subunit beta;
PDBTitle: crystal structure of dna polymerase sliding clamp from bacillus2 subtilis
97c4phxE_
not modelled 6.0 50
PDB header:cell adhesion
Chain: E: PDB Molecule:protein aggb;
PDBTitle: crystal structure of aggb, the minor subunit of aggregative adherence2 fimbriae type i from the escherichia coli o4h104
98c3j39i_
not modelled 6.0 38
PDB header:ribosome
Chain: I: PDB Molecule:60s ribosomal protein l10;
PDBTitle: structure of the d. melanogaster 60s ribosomal proteins
99c5w7gV_
not modelled 6.0 57
PDB header:virus
Chain: V: PDB Molecule:orf132;
PDBTitle: an envelope of a filamentous hyperthermophilic virus carries lipids in2 a horseshoe conformation

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