Phyre Home Retrieve Phyre Job Id
Emailmdejesus@rockefeller.edu
DescriptionRVBD0569_(-)_661006_661272
DateFri Jul 26 01:50:12 BST 2019
Unique Job IDda365df7839f1adc
SequenceMKAKVGDWLV ... Download FASTA
Job Typenormal
Job Expiry

Summary 

Top model
Image coloured by rainbow N → C terminus
Model dimensions (Å):X:31.461 Y:33.735 Z:25.576
Model (left) based on template c2a7yA_
Top template information
PDB header:structural genomics, unknown function
Chain: A: PDB Molecule:hypothetical protein rv2302/mt2359;
PDBTitle: solution structure of the conserved hypothetical protein2 rv2302 from the bacterium mycobacterium tuberculosis
Confidence and coverage
Confidence:100.0% Coverage: 86%
76 residues ( 86% of your sequence) have been modelled with 100.0% confidence by the single highest scoring template.
3D viewing
Interactive 3D view in JSmol
For other options to view your downloaded structure offline see the FAQ

Sequence analysis 

Download FASTA version

Secondary structure and disorder prediction [Show] 

Domain analysis [Show] 

Detailed template information [Hide] 

 

#
Template Alignment Coverage3D Model Confidence
% i.d. Template Information
1c2a7yA_



100.0 62
PDB header:structural genomics, unknown function
Chain: A: PDB Molecule:hypothetical protein rv2302/mt2359;
PDBTitle: solution structure of the conserved hypothetical protein2 rv2302 from the bacterium mycobacterium tuberculosis
2d2a7ya1



100.0 62
Fold:SH3-like barrel
Superfamily:Cell growth inhibitor/plasmid maintenance toxic component
Family:Rv2302-like
3c2ekoA_



82.4 18
PDB header:transferase
Chain: A: PDB Molecule:histone acetyltransferase htatip;
PDBTitle: solution structure of ruh-073, a pseudo chromo domain from2 human cdna
4d2huga1



76.7 30
Fold:SH3-like barrel
Superfamily:Chromo domain-like
Family:Chromo domain
5c5znpB_



71.4 21
PDB header:gene regulation
Chain: B: PDB Molecule:short life family protein;
PDBTitle: crystal structure of ptshl in complex with an h3k4me3 peptide
6c6d7yA_



70.6 29
PDB header:toxin
Chain: A: PDB Molecule:hemagglutinin;
PDBTitle: 1.75 angstrom resolution crystal structure of the toxic c-terminal tip2 of cdia from pseudomonas aeruginosa in complex with immune protein
7c3qiiA_



67.4 17
PDB header:transcription regulator
Chain: A: PDB Molecule:phd finger protein 20;
PDBTitle: crystal structure of tudor domain 2 of human phd finger protein 20
8d2ix0a1



67.2 17
Fold:OB-fold
Superfamily:Nucleic acid-binding proteins
Family:Cold shock DNA-binding domain-like
9c1w4sA_



65.7 24
PDB header:nuclear protein
Chain: A: PDB Molecule:polybromo 1 protein;
PDBTitle: crystal structure of the proximal bah domain of polybromo
10d1fcga2



61.8 10
Fold:Immunoglobulin-like beta-sandwich
Superfamily:Immunoglobulin
Family:I set domains
11c4bb7A_



57.1 26
PDB header:transcription
Chain: A: PDB Molecule:chromatin structure-remodeling complex subunit rsc2;
PDBTitle: crystal structure of the yeast rsc2 bah domain
12c3qz9D_



54.4 21
PDB header:lyase
Chain: D: PDB Molecule:co-type nitrile hydratase beta subunit;
PDBTitle: crystal structure of co-type nitrile hydratase beta-y215f from2 pseudomonas putida.
13d2f5ka1



48.5 11
Fold:SH3-like barrel
Superfamily:Chromo domain-like
Family:Chromo barrel domain
14d1f2qa2



46.7 15
Fold:Immunoglobulin-like beta-sandwich
Superfamily:Immunoglobulin
Family:I set domains
15d1ugpb_



44.6 21
Fold:SH3-like barrel
Superfamily:Electron transport accessory proteins
Family:Nitrile hydratase beta chain
16c1u9pA_



44.6 31
PDB header:unknown function
Chain: A: PDB Molecule:parc;
PDBTitle: permuted single-chain arc
17d1v6za1



44.6 22
Fold:PUA domain-like
Superfamily:PUA domain-like
Family:YggJ N-terminal domain-like
18c1xniI_



44.3 21
PDB header:cell cycle
Chain: I: PDB Molecule:tumor suppressor p53-binding protein 1;
PDBTitle: tandem tudor domain of 53bp1
19c2ro0A_



43.3 8
PDB header:transferase
Chain: A: PDB Molecule:histone acetyltransferase esa1;
PDBTitle: solution structure of the knotted tudor domain of the yeast2 histone acetyltransferase, esa1
20c5in1A_



41.6 14
PDB header:transcription
Chain: A: PDB Molecule:mrg701;
PDBTitle: crystal structure of the mrg701 chromodomain
21c2rnzA_



not modelled 38.5 13
PDB header:transferase
Chain: A: PDB Molecule:histone acetyltransferase esa1;
PDBTitle: solution structure of the presumed chromodomain of the2 yeast histone acetyltransferase, esa1
22c4fsxB_



not modelled 38.5 26
PDB header:transferase
Chain: B: PDB Molecule:dna (cytosine-5)-methyltransferase 1;
PDBTitle: crystal structure of se-substituted zea mays zmet2 in complex with sah
23d1wgsa_



not modelled 37.1 18
Fold:SH3-like barrel
Superfamily:Chromo domain-like
Family:Chromo barrel domain
24c2qqsB_



not modelled 36.8 11
PDB header:oxidoreductase
Chain: B: PDB Molecule:jmjc domain-containing histone demethylation
PDBTitle: jmjd2a tandem tudor domains in complex with a trimethylated2 histone h4-k20 peptide
25c4uc4A_



not modelled 35.8 18
PDB header:replication
Chain: A: PDB Molecule:lysine-specific demethylase 4b;
PDBTitle: crystal structure of hybrid tudor domain of human lysine demethylase2 kdm4b
26c2lrqA_



not modelled 35.5 5
PDB header:transcription
Chain: A: PDB Molecule:nua4 complex subunit eaf3 homolog;
PDBTitle: chemical shift assignment and solution structure of fr822a from2 drosophila melanogaster. northeast structural genomics consortium3 target fr822a
27d2fcba2



not modelled 34.1 10
Fold:Immunoglobulin-like beta-sandwich
Superfamily:Immunoglobulin
Family:I set domains
28c2xdpA_



not modelled 33.2 16
PDB header:oxidoreductase
Chain: A: PDB Molecule:lysine-specific demethylase 4c;
PDBTitle: crystal structure of the tudor domain of human jmjd2c
29c2dxcG_



not modelled 33.0 25
PDB header:hydrolase
Chain: G: PDB Molecule:thiocyanate hydrolase subunit alpha;
PDBTitle: recombinant thiocyanate hydrolase, fully-matured form
30c4in3C_



not modelled 32.5 19
PDB header:protein transport
Chain: C: PDB Molecule:chitin biosynthesis protein chs5;
PDBTitle: crystal structure of the chs5-bch1 exomer cargo adaptor complex
31c4pl6A_



not modelled 32.4 16
PDB header:transcription
Chain: A: PDB Molecule:at1g02740;
PDBTitle: structure of the chromodomain of mrg2 in complex with h3k4me3
32c3luuA_



not modelled 32.3 7
PDB header:biosynthetic protein
Chain: A: PDB Molecule:uncharacterized protein;
PDBTitle: crystal structure of protein with unknown function which belongs to2 pfam duf971 family (afe_2189) from acidithiobacillus ferrooxidans3 atcc 23270 at 1.93 a resolution
33c2d9uA_



not modelled 28.9 30
PDB header:structural genomics, unknown function
Chain: A: PDB Molecule:chromobox protein homolog 2 (isoform 2);
PDBTitle: solution structure of the chromo domain of chromobox2 homolog 2 from human
34c2equA_



not modelled 28.6 15
PDB header:protein binding
Chain: A: PDB Molecule:phd finger protein 20-like 1;
PDBTitle: solution structure of the tudor domain of phd finger2 protein 20-like 1
35c4fm4D_



not modelled 28.1 14
PDB header:lyase
Chain: D: PDB Molecule:nitrile hydratase beta subunit;
PDBTitle: wild type fe-type nitrile hydratase from comamonas testosteroni ni1
36d2z1ca1



not modelled 26.4 40
Fold:OB-fold
Superfamily:HupF/HypC-like
Family:HupF/HypC-like
37c3dlmA_



not modelled 25.5 11
PDB header:transferase
Chain: A: PDB Molecule:histone-lysine n-methyltransferase setdb1;
PDBTitle: crystal structure of tudor domain of human histone-lysine n-2 methyltransferase setdb1
38d2ot2a1



not modelled 24.5 30
Fold:OB-fold
Superfamily:HupF/HypC-like
Family:HupF/HypC-like
39c4m6tA_



not modelled 22.9 15
PDB header:transcription regulator
Chain: A: PDB Molecule:rna polymerase ii-associated factor 1 homolog, linker, rna
PDBTitle: structure of human paf1 and leo1 complex
40c2e5qA_



not modelled 22.8 30
PDB header:transcription
Chain: A: PDB Molecule:phd finger protein 19;
PDBTitle: solution structure of the tudor domain of phd finger2 protein 19, isoform b [homo sapiens]
41d1pfba_



not modelled 22.8 35
Fold:SH3-like barrel
Superfamily:Chromo domain-like
Family:Chromo domain
42c2v3mF_



not modelled 22.5 21
PDB header:ribosomal protein
Chain: F: PDB Molecule:naf1;
PDBTitle: structure of the gar1 domain of naf1
43d1gkpa1



not modelled 21.9 22
Fold:Composite domain of metallo-dependent hydrolases
Superfamily:Composite domain of metallo-dependent hydrolases
Family:Hydantoinase (dihydropyrimidinase)
44c4a4fA_



not modelled 21.6 17
PDB header:rna binding protein
Chain: A: PDB Molecule:survival of motor neuron-related-splicing factor 30;
PDBTitle: solution structure of spf30 tudor domain in complex with symmetrically2 dimethylated arginine
45d1q3la_



not modelled 21.3 30
Fold:SH3-like barrel
Superfamily:Chromo domain-like
Family:Chromo domain
46c1q3lA_



not modelled 21.3 30
PDB header:structural protein
Chain: A: PDB Molecule:heterochromatin protein 1;
PDBTitle: chromodomain of hp1 complexed with histone h3 tail2 containing monomethyllysine 9.
47d1vk3a3



not modelled 21.3 25
Fold:PurM C-terminal domain-like
Superfamily:PurM C-terminal domain-like
Family:PurM C-terminal domain-like
48d2dnva1



not modelled 20.8 26
Fold:SH3-like barrel
Superfamily:Chromo domain-like
Family:Chromo domain
49c2k1bA_



not modelled 20.8 30
PDB header:transcription regulator
Chain: A: PDB Molecule:chromobox protein homolog 7;
PDBTitle: solution nmr structure of the chromo domain of the2 chromobox protein homolog 7
50c2ldmA_



not modelled 20.6 17
PDB header:transcription/protein binding
Chain: A: PDB Molecule:uncharacterized protein;
PDBTitle: solution structure of human phf20 tudor2 domain bound to a p53 segment2 containing a dimethyllysine analog p53k370me2
51c4q66J_



not modelled 20.4 19
PDB header:protein transport
Chain: J: PDB Molecule:chs5p;
PDBTitle: structure of exomer bound to arf1.
52c1g5vA_



not modelled 20.4 17
PDB header:translation
Chain: A: PDB Molecule:survival motor neuron protein 1;
PDBTitle: solution structure of the tudor domain of the human smn2 protein
53d1guwa_



not modelled 19.8 20
Fold:SH3-like barrel
Superfamily:Chromo domain-like
Family:Chromo domain
54c3j4uA_



not modelled 18.9 20
PDB header:virus
Chain: A: PDB Molecule:major capsid protein;
PDBTitle: a new topology of the hk97-like fold revealed in bordetella2 bacteriophage: non-covalent chainmail secured by jellyrolls
55c5e4wD_



not modelled 18.9 30
PDB header:transport protein
Chain: D: PDB Molecule:signal recognition particle 43 kda protein, chloroplastic;
PDBTitle: crystal structure of cpsrp43 chromodomains 2 and 3 in complex with the2 alb3 tail
56c3fdtA_



not modelled 18.8 20
PDB header:protein binding
Chain: A: PDB Molecule:chromobox protein homolog 5;
PDBTitle: crystal structure of the complex of human chromobox homolog 5 (cbx5)2 with h3k9(me)3 peptide
57d3d3ra1



not modelled 18.8 27
Fold:OB-fold
Superfamily:HupF/HypC-like
Family:HupF/HypC-like
58c3d3rA_



not modelled 18.6 27
PDB header:chaperone
Chain: A: PDB Molecule:hydrogenase assembly chaperone hypc/hupf;
PDBTitle: crystal structure of the hydrogenase assembly chaperone hypc/hupf2 family protein from shewanella oneidensis mr-1
59d2qdyb1



not modelled 18.3 21
Fold:SH3-like barrel
Superfamily:Electron transport accessory proteins
Family:Nitrile hydratase beta chain
60c1pdqA_



not modelled 18.1 35
PDB header:structural protein
Chain: A: PDB Molecule:polycomb protein;
PDBTitle: polycomb chromodomain complexed with the histone h3 tail2 containing trimethyllysine 27.
61c2e5pA_



not modelled 18.0 31
PDB header:transcription
Chain: A: PDB Molecule:phd finger protein 1;
PDBTitle: solution structure of the tudor domain of phd finger2 protein 1 (phf1 protein)
62c2kvmA_



not modelled 18.0 30
PDB header:transcription
Chain: A: PDB Molecule:chromobox protein homolog 7;
PDBTitle: solution structure of the cbx7 chromodomain in complex with a h3k27me22 peptide
63c2l6pA_



not modelled 17.8 12
PDB header:structure genomics, unknown function
Chain: A: PDB Molecule:phac1, phac2 and phad genes;
PDBTitle: nmr solution structure of the protein np_253742.1
64d1v29b_



not modelled 17.1 21
Fold:SH3-like barrel
Superfamily:Electron transport accessory proteins
Family:Nitrile hydratase beta chain
65c3fpnB_



not modelled 16.8 11
PDB header:dna binding protein
Chain: B: PDB Molecule:geobacillus stearothermophilus uvrb interaction domain;
PDBTitle: crystal structure of uvra-uvrb interaction domains
66c2l12A_



not modelled 16.7 30
PDB header:transcription regulator
Chain: A: PDB Molecule:chromobox homolog 7;
PDBTitle: solution nmr structure of the chromobox protein 7 with h3k9me3
67c3p8dB_



not modelled 16.6 17
PDB header:protein binding
Chain: B: PDB Molecule:medulloblastoma antigen mu-mb-50.72;
PDBTitle: crystal structure of the second tudor domain of human phf20 (homodimer2 form)
68d1x3pa1



not modelled 15.9 36
Fold:SH3-like barrel
Superfamily:Chromo domain-like
Family:Chromo domain
69c4bxsV_



not modelled 15.5 42
PDB header:blood clotting
Chain: V: PDB Molecule:venom prothrombin activator pseutarin-c non-catalytic
PDBTitle: crystal structure of the prothrombinase complex from the2 venom of pseudonaja textilis
70c2l6nA_



not modelled 15.4 12
PDB header:structure genomics, unknown function
Chain: A: PDB Molecule:uncharacterized protein yp_001092504.1;
PDBTitle: nmr solution structure of the protein yp_001092504.1
71c2lccA_



not modelled 14.8 18
PDB header:transcription
Chain: A: PDB Molecule:at-rich interactive domain-containing protein 4a;
PDBTitle: solution structure of rbbp1 chromobarrel domain
72c4haeA_



not modelled 14.7 30
PDB header:protein binding
Chain: A: PDB Molecule:chromodomain y-like protein 2;
PDBTitle: crystal structure of the cdyl2-chromodomain
73c3pt9A_



not modelled 14.6 20
PDB header:transferase
Chain: A: PDB Molecule:dna (cytosine-5)-methyltransferase 1;
PDBTitle: crystal structure of mouse dnmt1(731-1602) in the free state
74c2dnvA_



not modelled 14.6 26
PDB header:transcription
Chain: A: PDB Molecule:chromobox protein homolog 8;
PDBTitle: solution structure of rsgi ruh-055, a chromo domain from2 mus musculus cdna
75c4dowA_



not modelled 14.0 27
PDB header:replication
Chain: A: PDB Molecule:origin recognition complex subunit 1;
PDBTitle: structure of mouse orc1 bah domain bound to h4k20me2
76c3lweA_



not modelled 13.9 30
PDB header:cell cycle
Chain: A: PDB Molecule:m-phase phosphoprotein 8;
PDBTitle: the crystal structure of mpp8
77d2j5wa1



not modelled 13.8 33
Fold:Cupredoxin-like
Superfamily:Cupredoxins
Family:Multidomain cupredoxins
78c3mtsA_



not modelled 13.6 15
PDB header:transferase
Chain: A: PDB Molecule:histone-lysine n-methyltransferase suv39h1;
PDBTitle: chromo domain of human histone-lysine n-methyltransferase suv39h1
79c4qucA_



not modelled 13.5 30
PDB header:protein binding
Chain: A: PDB Molecule:re36324p;
PDBTitle: crystal structure of chromodomain of rhino
80d2j5wa4



not modelled 13.3 42
Fold:Cupredoxin-like
Superfamily:Cupredoxins
Family:Multidomain cupredoxins
81c4y9vA_



not modelled 13.1 35
PDB header:lyase
Chain: A: PDB Molecule:particle-associated lyase;
PDBTitle: gp54 tailspike of acinetobacter baumannii bacteriophage ap22 in2 complex with a. baumannii capsular saccharide
82d2ix0a2



not modelled 13.1 15
Fold:OB-fold
Superfamily:Nucleic acid-binding proteins
Family:Cold shock DNA-binding domain-like
83d2adza1



not modelled 12.2 20
Fold:PH domain-like barrel
Superfamily:PH domain-like
Family:Pleckstrin-homology domain (PH domain)
84d1nxza1



not modelled 12.2 18
Fold:PUA domain-like
Superfamily:PUA domain-like
Family:YggJ N-terminal domain-like
85c2m2lA_



not modelled 12.2 26
PDB header:nuclear protein
Chain: A: PDB Molecule:putative uncharacterized protein;
PDBTitle: solution structure of entamoeba histolytica hp1 chromodomain
86d1g6za_



not modelled 11.8 32
Fold:SH3-like barrel
Superfamily:Chromo domain-like
Family:Chromo domain
87c4dfcC_



not modelled 11.8 12
PDB header:hydrolase/dna binding protein
Chain: C: PDB Molecule:transcription-repair-coupling factor;
PDBTitle: core uvra/trcf complex
88d2j5wa3



not modelled 11.8 33
Fold:Cupredoxin-like
Superfamily:Cupredoxins
Family:Multidomain cupredoxins
89c2r7eB_



not modelled 11.6 25
PDB header:blood clotting
Chain: B: PDB Molecule:coagulation factor viii;
PDBTitle: crystal structure analysis of coagulation factor viii
90d2vv5a1



not modelled 11.5 22
Fold:Sm-like fold
Superfamily:Sm-like ribonucleoproteins
Family:Mechanosensitive channel protein MscS (YggB), middle domain
91d2dnta1



not modelled 11.4 37
Fold:SH3-like barrel
Superfamily:Chromo domain-like
Family:Chromo domain
92c5tvzA_



not modelled 11.1 22
PDB header:transport protein
Chain: A: PDB Molecule:nucleoporin pom152;
PDBTitle: solution nmr structure of saccharomyces cerevisiae pom152 ig-like2 repeat, residues 718-820
93c3h91B_



not modelled 11.1 30
PDB header:transcription
Chain: B: PDB Molecule:chromobox protein homolog 2;
PDBTitle: crystal structure of the complex of human chromobox homolog 2 (cbx2)2 and h3k27 peptide
94d1mhna_



not modelled 11.1 17
Fold:SH3-like barrel
Superfamily:Tudor/PWWP/MBT
Family:Tudor domain
95c2rvmA_



not modelled 10.8 21
PDB header:transcription
Chain: A: PDB Molecule:chromobox protein homolog 5;
PDBTitle: solution structure of the chromodomain of hp1alpha with the2 phosphorylated n-terminal tail
96c1ufiD_



not modelled 10.6 67
PDB header:dna binding protein
Chain: D: PDB Molecule:major centromere autoantigen b;
PDBTitle: crystal structure of the dimerization domain of human cenp-b
97c3uaiC_



not modelled 10.4 10
PDB header:isomerase/chaperone
Chain: C: PDB Molecule:h/aca ribonucleoprotein complex subunit 1;
PDBTitle: structure of the shq1-cbf5-nop10-gar1 complex from saccharomyces2 cerevisiae
98c2xk0A_



not modelled 10.4 17
PDB header:transcription
Chain: A: PDB Molecule:polycomb protein pcl;
PDBTitle: solution structure of the tudor domain from drosophila2 polycomblike (pcl)
99d1ufia_



not modelled 10.4 67
Fold:ROP-like
Superfamily:Dimerisation domain of CENP-B
Family:Dimerisation domain of CENP-B

Binding site prediction 

Due to computational demand, binding site predictions are not run for batch jobs

If you want to predict binding sites, please manually submit your model of choice to 3DLigandSite