Phyre Home Retrieve Phyre Job Id
Emailmdejesus@rockefeller.edu
DescriptionRVBD0572c_(-)_665045_665386
DateFri Jul 26 01:50:12 BST 2019
Unique Job IDf12098ac8d6336c3
SequenceMGEHAIKRHM ... Download FASTA
Job Typenormal
Job Expiry

Summary 

Top model
Image coloured by rainbow N → C terminus
Model dimensions (Å):X:25.683 Y:33.491 Z:21.436
Model (left) based on template d1sr3a_
Top template information
Fold:OB-fold
Superfamily:Heme chaperone CcmE
Family:Heme chaperone CcmE
Confidence and coverage
Confidence: 35.2% Coverage: 35%
40 residues ( 35% of your sequence) have been modelled with 35.2% confidence by the single highest scoring template.
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3D viewing
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Sequence analysis 

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Secondary structure and disorder prediction [Show] 

Domain analysis [Show] 

Detailed template information [Hide] 

 

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Template Alignment Coverage3D Model Confidence
% i.d. Template Information
1d1sr3a_



35.2 25
Fold:OB-fold
Superfamily:Heme chaperone CcmE
Family:Heme chaperone CcmE
2c3k8rA_



27.0 26
PDB header:structural genomics, unknown function
Chain: A: PDB Molecule:uncharacterized protein;
PDBTitle: crystal structure of protein of unknown function (yp_427503.1) from2 rhodospirillum rubrum atcc 11170 at 2.75 a resolution
3c2gj2A_



26.4 50
PDB header:metal binding protein
Chain: A: PDB Molecule:wsv230;
PDBTitle: crystal structure of vp9 from white spot syndrome virus
4d1izna_



20.0 44
Fold:Subunits of heterodimeric actin filament capping protein Capz
Superfamily:Subunits of heterodimeric actin filament capping protein Capz
Family:Capz alpha-1 subunit
5c4j43A_



19.9 38
PDB header:oxidoreductase
Chain: A: PDB Molecule:pyld;
PDBTitle: pyld holoenzyme
6d2f69a1



18.6 47
Fold:open-sided beta-meander
Superfamily:Histone H3 K4-specific methyltransferase SET7/9 N-terminal domain
Family:Histone H3 K4-specific methyltransferase SET7/9 N-terminal domain
7c5nz7A_



18.6 19
PDB header:hydrolase
Chain: A: PDB Molecule:cellodextrin phosphorylase;
PDBTitle: clostridium thermocellum cellodextrin phosphorylase ligand free form
8c4m6tA_



18.4 29
PDB header:transcription regulator
Chain: A: PDB Molecule:rna polymerase ii-associated factor 1 homolog, linker, rna
PDBTitle: structure of human paf1 and leo1 complex
9c5nz8A_



18.3 19
PDB header:hydrolase
Chain: A: PDB Molecule:cellodextrin phosphorylase;
PDBTitle: clostridium thermocellum cellodextrin phosphorylase with cellotetraose2 and phosphate bound
10c4akrC_



18.2 67
PDB header:actin-binding protein
Chain: C: PDB Molecule:f-actin-capping protein subunit alpha;
PDBTitle: crystal structure of the cytoplasmic actin capping protein2 cap32_34 from dictyostelium discoideum
11c4c9vA_



14.2 47
PDB header:signaling protein
Chain: A: PDB Molecule:rnf43;
PDBTitle: xenopus rnf43 ectodomain in complex with xenopus rspo2 fu1-fu2
12d2es7a1



14.1 32
Fold:Thioredoxin fold
Superfamily:Thioredoxin-like
Family:HyaE-like
13d2fd6u2



13.6 31
Fold:Snake toxin-like
Superfamily:Snake toxin-like
Family:Extracellular domain of cell surface receptors
14d1pzga2



12.9 63
Fold:LDH C-terminal domain-like
Superfamily:LDH C-terminal domain-like
Family:Lactate & malate dehydrogenases, C-terminal domain
15c4c84B_



12.8 37
PDB header:ligase
Chain: B: PDB Molecule:e3 ubiquitin-protein ligase znrf3;
PDBTitle: zebrafish znrf3 ectodomain crystal form i
16c3ddsB_



12.6 29
PDB header:transferase
Chain: B: PDB Molecule:glycogen phosphorylase, liver form;
PDBTitle: crystal structure of glycogen phosphorylase complexed with an2 anthranilimide based inhibitor gsk261
17c3hwuA_



12.1 24
PDB header:structural genomics, unknown function
Chain: A: PDB Molecule:putative dna-binding protein;
PDBTitle: crystal structure of putative dna-binding protein (yp_299413.1) from2 ralstonia eutropha jmp134 at 1.30 a resolution
18c3t69A_



11.2 38
PDB header:transferase
Chain: A: PDB Molecule:putative 2-dehydro-3-deoxygalactonokinase;
PDBTitle: crystal structure of a putative 2-dehydro-3-deoxygalactonokinase2 protein from sinorhizobium meliloti
19c2vx8D_



11.2 23
PDB header:endocytosis,exocytosis
Chain: D: PDB Molecule:nucleoporin-like protein rip, vesicle-associated membrane
PDBTitle: vamp7 longin domain hrb peptide complex
20c2gljR_



11.2 23
PDB header:hydrolase
Chain: R: PDB Molecule:
PDBTitle: crystal structure of aminopeptidase i from clostridium2 acetobutylicum
21d1x92a_



not modelled 11.2 18
Fold:SIS domain
Superfamily:SIS domain
Family:mono-SIS domain
22c3trjC_



not modelled 11.2 12
PDB header:isomerase
Chain: C: PDB Molecule:phosphoheptose isomerase;
PDBTitle: structure of a phosphoheptose isomerase from francisella tularensis
23d2atia1



not modelled 11.1 29
Fold:UDP-Glycosyltransferase/glycogen phosphorylase
Superfamily:UDP-Glycosyltransferase/glycogen phosphorylase
Family:Oligosaccharide phosphorylase
24c2yvaB_



not modelled 11.1 24
PDB header:dna binding protein
Chain: B: PDB Molecule:dnaa initiator-associating protein diaa;
PDBTitle: crystal structure of escherichia coli diaa
25c1qqgA_



not modelled 10.6 8
PDB header:signal transduction
Chain: A: PDB Molecule:insulin receptor substrate 1;
PDBTitle: crystal structure of the ph-ptb targeting region of irs-1
26d1tk9a_



not modelled 10.4 13
Fold:SIS domain
Superfamily:SIS domain
Family:mono-SIS domain
27c2x8nA_



not modelled 10.1 26
PDB header:structural genomics
Chain: A: PDB Molecule:cv0863;
PDBTitle: solution nmr structure of uncharacterized protein cv0863 from2 chromobacterium violaceum. northeast structural genomics target3 (nesg) target cvt3. ocsp target cv0863.
28d1wdia_



not modelled 10.0 18
Fold:QueA-like
Superfamily:QueA-like
Family:QueA-like
29c3shoA_



not modelled 9.6 31
PDB header:transcription regulator
Chain: A: PDB Molecule:transcriptional regulator, rpir family;
PDBTitle: crystal structure of rpir transcription factor from sphaerobacter2 thermophilus (sugar isomerase domain)
30c2ys5A_



not modelled 9.3 23
PDB header:signaling protein
Chain: A: PDB Molecule:fibroblast growth factor receptor substrate 3;
PDBTitle: solution structure of the complex of the ptb domain of snt-2 and 19-2 residue peptide (aa 1571-1589) of halk
31c2kctA_



not modelled 9.1 13
PDB header:chaperone
Chain: A: PDB Molecule:cytochrome c-type biogenesis protein ccme;
PDBTitle: solution nmr structure of the ob-fold domain of heme2 chaperone ccme from desulfovibrio vulgaris. northeast3 structural genomics target dvr115g.
32c2lcdA_



not modelled 8.9 25
PDB header:transcription
Chain: A: PDB Molecule:at-rich interactive domain-containing protein 4a;
PDBTitle: solution structure of rbbp1 tudor domain
33c2qvoA_



not modelled 8.8 39
PDB header:structural genomics, unknown function
Chain: A: PDB Molecule:uncharacterized protein af_1382;
PDBTitle: crystal structure of af1382 from archaeoglobus fulgidus
34c5by2A_



not modelled 8.8 24
PDB header:isomerase
Chain: A: PDB Molecule:phosphoheptose isomerase;
PDBTitle: sedoheptulose 7-phosphate isomerase from colwellia psychrerythraea2 strain 34h
35c1j6qA_



not modelled 8.7 18
PDB header:chaperone
Chain: A: PDB Molecule:cytochrome c maturation protein e;
PDBTitle: solution structure and characterization of the heme2 chaperone ccme
36d1j6qa_



not modelled 8.7 18
Fold:OB-fold
Superfamily:Heme chaperone CcmE
Family:Heme chaperone CcmE
37c2x3yA_



not modelled 8.6 25
PDB header:isomerase
Chain: A: PDB Molecule:phosphoheptose isomerase;
PDBTitle: crystal structure of gmha from burkholderia pseudomallei
38d1x94a_



not modelled 8.5 19
Fold:SIS domain
Superfamily:SIS domain
Family:mono-SIS domain
39c1h0hA_



not modelled 8.2 38
PDB header:electron transport
Chain: A: PDB Molecule:formate dehydrogenase subunit alpha;
PDBTitle: tungsten containing formate dehydrogenase from desulfovibrio gigas
40c2kc2A_



not modelled 7.9 29
PDB header:structural protein
Chain: A: PDB Molecule:talin-1;
PDBTitle: nmr structure of the f1 domain (residues 86-202) of the2 talin
41c4l7zC_



not modelled 7.9 26
PDB header:lyase
Chain: C: PDB Molecule:hpch/hpai aldolase;
PDBTitle: crystal structure of chloroflexus aurantiacus malyl-coa lyase
42d1pfsa_



not modelled 7.8 53
Fold:OB-fold
Superfamily:Nucleic acid-binding proteins
Family:Phage ssDNA-binding proteins
43c3htnA_



not modelled 7.6 18
PDB header:metal binding protein
Chain: A: PDB Molecule:putative dna binding protein;
PDBTitle: crystal structure of a putative dna binding protein (bt_1116) from2 bacteroides thetaiotaomicron vpi-5482 at 1.50 a resolution
44c2mr6A_



not modelled 7.4 58
PDB header:de novo protein
Chain: A: PDB Molecule:de novo designed protein or462;
PDBTitle: solution nmr structure of de novo designed protein, northeast2 structural genomics consortium (nesg) target or462
45c6b4sB_



not modelled 7.2 21
PDB header:allergen
Chain: B: PDB Molecule:11s globulin;
PDBTitle: crystal structure of brazil nut (bertholletia excelsa) allergen ber e2 2
46d1qqga2



not modelled 7.2 8
Fold:PH domain-like barrel
Superfamily:PH domain-like
Family:Phosphotyrosine-binding domain (PTB)
47d1jeoa_



not modelled 7.1 13
Fold:SIS domain
Superfamily:SIS domain
Family:mono-SIS domain
48c3ml4D_



not modelled 6.8 17
PDB header:signaling protein
Chain: D: PDB Molecule:protein dok-7;
PDBTitle: crystal structure of a complex between dok7 ph-ptb and the musk2 juxtamembrane region
49c1h5nC_



not modelled 6.7 31
PDB header:oxidoreductase
Chain: C: PDB Molecule:dmso reductase;
PDBTitle: dmso reductase modified by the presence of dms and air
50d2nn6g2



not modelled 6.3 60
Fold:Barrel-sandwich hybrid
Superfamily:Ribosomal L27 protein-like
Family:ECR1 N-terminal domain-like
51d1vima_



not modelled 6.3 20
Fold:SIS domain
Superfamily:SIS domain
Family:mono-SIS domain
52d2afwa1



not modelled 6.2 32
Fold:Phosphorylase/hydrolase-like
Superfamily:Zn-dependent exopeptidases
Family:Glutaminyl-peptide cyclotransferase-like
53d1xgsa1



not modelled 6.2 19
Fold:DNA/RNA-binding 3-helical bundle
Superfamily:"Winged helix" DNA-binding domain
Family:Methionine aminopeptidase, insert domain
54c3h8tA_



not modelled 6.2 28
PDB header:heme-binding protein
Chain: A: PDB Molecule:hmuy;
PDBTitle: structure of porphyromonas gingivalis heme-binding protein hmuy in2 complex with heme
55c5uqzA_



not modelled 6.2 17
PDB header:sugar binding protein
Chain: A: PDB Molecule:glucan-binding protein c, gbpc;
PDBTitle: structural analysis of the glucan binding protein c of streptococcus2 mutans provides evidence that it mediates both sucrose-independent3 and -dependent adherence
56c4gwpB_



not modelled 6.1 22
PDB header:transcription
Chain: B: PDB Molecule:mediator of rna polymerase ii transcription subunit 17;
PDBTitle: structure of the mediator head module from s. cerevisiae
57c2l8bA_



not modelled 5.7 24
PDB header:hydrolase
Chain: A: PDB Molecule:protein trai;
PDBTitle: trai (381-569)
58d1vlfm2



not modelled 5.7 19
Fold:Formate dehydrogenase/DMSO reductase, domains 1-3
Superfamily:Formate dehydrogenase/DMSO reductase, domains 1-3
Family:Formate dehydrogenase/DMSO reductase, domains 1-3
59c5y59B_



not modelled 5.6 55
PDB header:protein binding
Chain: B: PDB Molecule:atp-dependent dna helicase ii subunit 2;
PDBTitle: crystal structure of ku80 and sir4
60c3s6kA_



not modelled 5.6 22
PDB header:transferase
Chain: A: PDB Molecule:acetylglutamate kinase;
PDBTitle: crystal structure of xcnags
61c6b9rD_



not modelled 5.6 17
PDB header:oxidoreductase
Chain: D: PDB Molecule:hydroxyethylphosphonate dioxygenase;
PDBTitle: streptomyces albus hepd with substrate 2-hydroxyethylphosphonate (2-2 hep) and fe(ii) bound
62c2e7zA_



not modelled 5.4 56
PDB header:lyase
Chain: A: PDB Molecule:acetylene hydratase ahy;
PDBTitle: acetylene hydratase from pelobacter acetylenicus
63c4mhzA_



not modelled 5.4 19
PDB header:transferase
Chain: A: PDB Molecule:glutaminyl cyclase, putative;
PDBTitle: crystal structure of apo-form glutaminyl cyclase from ixodes2 scapularis in complex with pbd150
64d1e6yc_



not modelled 5.3 23
Fold:Ferredoxin-like
Superfamily:Methyl-coenzyme M reductase subunits
Family:Methyl-coenzyme M reductase gamma chain
65c2yt2A_



not modelled 5.2 25
PDB header:signaling protein
Chain: A: PDB Molecule:fibroblast growth factor receptor substrate 3 and alk
PDBTitle: solution structure of the chimera of the ptb domain of snt-2 and 19-2 residue peptide (aa 1571-1589) of halk
66c5uqiA_



not modelled 5.1 24
PDB header:isomerase
Chain: A: PDB Molecule:phosphosugar isomerase;
PDBTitle: e. coli cft073 c3406 in complex with a5p

Binding site prediction 

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