Phyre Home Retrieve Phyre Job Id
Emailmdejesus@rockefeller.edu
DescriptionRVBD0582_(-)_677925_678332
DateFri Jul 26 01:50:13 BST 2019
Unique Job ID10d996a22d8fb7f0
SequenceVIIDTSALLA ... Download FASTA
Job Typenormal
Job Expiry

Summary 

Top model
Image coloured by rainbow N → C terminus
Model dimensions (Å):X:46.839 Y:40.996 Z:39.497
Model (left) based on template c5x3tD_
Top template information
PDB header:antitoxin/toxin
Chain: D: PDB Molecule:ribonuclease vapc26;
PDBTitle: vapbc from mycobacterium tuberculosis
Confidence and coverage
Confidence:100.0% Coverage:100%
135 residues (100% of your sequence) have been modelled with 100.0% confidence by the single highest scoring template.
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Sequence analysis 

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Secondary structure and disorder prediction [Show] 

Domain analysis [Show] 

Detailed template information [Hide] 

 

#
Template Alignment Coverage3D Model Confidence
% i.d. Template Information
1c5x3tD_



100.0 99
PDB header:antitoxin/toxin
Chain: D: PDB Molecule:ribonuclease vapc26;
PDBTitle: vapbc from mycobacterium tuberculosis
2c5wzfB_



99.9 20
PDB header:hydrolase
Chain: B: PDB Molecule:23s rrna-specific endonuclease vapc20;
PDBTitle: crystal structure of mycobacterium tuberculosis vapc20 (rv2549c),2 sarcin-ricin loop cleaving toxin
3c4xgrG_



99.8 21
PDB header:toxin/antitoxin
Chain: G: PDB Molecule:ribonuclease vapc30;
PDBTitle: crystal structure of addiction module from mycobacterial species
4d1w8ia_



99.8 15
Fold:PIN domain-like
Superfamily:PIN domain-like
Family:PIN domain
5c5l6mC_



99.8 17
PDB header:hydrolase
Chain: C: PDB Molecule:ribonuclease vapc;
PDBTitle: structure of caulobacter crescentus vapbc1 (vapb1deltac:vapc1 form)
6c3tndC_



99.8 18
PDB header:translation, toxin
Chain: C: PDB Molecule:trna(fmet)-specific endonuclease vapc;
PDBTitle: crystal structure of shigella flexneri vapbc toxin-antitoxin complex
7c6nklA_



99.7 17
PDB header:antitoxin
Chain: A: PDB Molecule:ribonuclease vapc;
PDBTitle: 2.2 a resolution structure of vapbc-1 from nontypeable haemophilus2 influenzae
8c6a7vG_



99.7 18
PDB header:toxin/antitoxin
Chain: G: PDB Molecule:ribonuclease vapc11;
PDBTitle: crystal structure of mycobacterium tuberculosis vapbc11 toxin-2 antitoxin complex
9c3zvkC_



99.7 15
PDB header:antitoxin/toxin/dna
Chain: C: PDB Molecule:toxin of toxin-antitoxin system;
PDBTitle: crystal structure of vapbc2 from rickettsia felis bound to2 a dna fragment from their promoter
10d2h1ca1



99.7 21
Fold:PIN domain-like
Superfamily:PIN domain-like
Family:PIN domain
11d1v96a1



99.7 15
Fold:PIN domain-like
Superfamily:PIN domain-like
Family:PIN domain
12c3h87B_



99.7 21
PDB header:toxin/antitoxin
Chain: B: PDB Molecule:putative uncharacterized protein;
PDBTitle: rv0301 rv0300 toxin antitoxin complex from mycobacterium tuberculosis
13c4chgC_



99.7 18
PDB header:toxin/antitoxin
Chain: C: PDB Molecule:probable ribonuclease vapc15;
PDBTitle: crystal structure of vapbc15 complex from mycobacterium tuberculosis
14d1y82a1



99.7 17
Fold:PIN domain-like
Superfamily:PIN domain-like
Family:PIN domain
15c5sv2A_



99.6 11
PDB header:hydrolase
Chain: A: PDB Molecule:ribonuclease vapc21;
PDBTitle: toxin vapc21 from mycobacterium tuberculosis
16c3dboB_



99.6 24
PDB header:toxin/antitoxin
Chain: B: PDB Molecule:uncharacterized protein;
PDBTitle: crystal structure of a member of the vapbc family of toxin-antitoxin2 systems, vapbc-5, from mycobacterium tuberculosis
17d2fe1a1



99.6 17
Fold:PIN domain-like
Superfamily:PIN domain-like
Family:PIN domain
18c2fe1A_



99.6 17
PDB header:structural genomics, unknown function
Chain: A: PDB Molecule:conserved hypothetical protein pae0151;
PDBTitle: crystal structure of pae0151 from pyrobaculum aerophilum
19d1v8pa_



98.7 17
Fold:PIN domain-like
Superfamily:PIN domain-like
Family:PIN domain
20c1v8pK_



98.7 17
PDB header:structural genomics, unknown function
Chain: K: PDB Molecule:hypothetical protein pae2754;
PDBTitle: crystal structure of pae2754 from pyrobaculum aerophilum
21c3i8oA_



not modelled 97.9 15
PDB header:rna binding protein
Chain: A: PDB Molecule:kh domain-containing protein mj1533;
PDBTitle: a domain of a functionally unknown protein from methanocaldococcus2 jannaschii dsm 2661.
22c3ix7A_



not modelled 97.8 18
PDB header:structural genomics, unknown function
Chain: A: PDB Molecule:uncharacterized protein ttha0540;
PDBTitle: crystal structure of a domain of functionally unknown protein from2 thermus thermophilus hb8
23d1o4wa_



not modelled 97.5 17
Fold:PIN domain-like
Superfamily:PIN domain-like
Family:PIN domain
24c2lcqA_



not modelled 97.4 16
PDB header:metal binding protein
Chain: A: PDB Molecule:putative toxin vapc6;
PDBTitle: solution structure of the endonuclease nob1 from p.horikoshii
25c5jpqd_



not modelled 96.7 18
PDB header:ribosome
Chain: D: PDB Molecule:wd40 domain proteins;
PDBTitle: cryo-em structure of the 90s pre-ribosome
26c5ywwA_



not modelled 96.6 18
PDB header:hydrolase
Chain: A: PDB Molecule:nucleotide binding protein pinc;
PDBTitle: archael ruvb-like holiday junction helicase
27c2hwwC_



not modelled 96.4 23
PDB header:rna binding protein
Chain: C: PDB Molecule:telomerase-binding protein est1a;
PDBTitle: structure of pin domain of human smg6
28c5yz4A_



not modelled 96.4 21
PDB header:hydrolase
Chain: A: PDB Molecule:rrna-processing protein fcf1;
PDBTitle: structure of the pin domain endonuclease utp24
29c5f4hF_



not modelled 96.3 18
PDB header:hydrolase
Chain: F: PDB Molecule:nucleotide binding protein pinc;
PDBTitle: archael ruvb-like holiday junction helicase
30c2hwyB_



not modelled 92.4 19
PDB header:rna binding protein
Chain: B: PDB Molecule:protein smg5;
PDBTitle: structure of pin domain of human smg5.
31c6g5iy_



not modelled 91.5 19
PDB header:ribosome
Chain: Y: PDB Molecule:40s ribosomal protein s24;
PDBTitle: cryo-em structure of a late human pre-40s ribosomal subunit - state r
32c4mj7B_



not modelled 84.3 10
PDB header:rna binding protein
Chain: B: PDB Molecule:rrna-processing protein utp23;
PDBTitle: crystal structure of the pin domain of saccharomyces cerevisiae utp23
33c3v32B_



not modelled 70.9 25
PDB header:hydrolase
Chain: B: PDB Molecule:ribonuclease zc3h12a;
PDBTitle: crystal structure of mcpip1 n-terminal conserved domain
34c3v33A_



not modelled 64.0 22
PDB header:hydrolase
Chain: A: PDB Molecule:ribonuclease zc3h12a;
PDBTitle: crystal structure of mcpip1 conserved domain with zinc-finger motif
35d1zcza2



not modelled 39.0 20
Fold:Cytidine deaminase-like
Superfamily:Cytidine deaminase-like
Family:AICAR transformylase domain of bifunctional purine biosynthesis enzyme ATIC
36d1g8ma2



not modelled 34.5 17
Fold:Cytidine deaminase-like
Superfamily:Cytidine deaminase-like
Family:AICAR transformylase domain of bifunctional purine biosynthesis enzyme ATIC
37d1s1da_



not modelled 22.2 27
Fold:5-bladed beta-propeller
Superfamily:Apyrase
Family:Apyrase
38d1pkxa2



not modelled 20.0 20
Fold:Cytidine deaminase-like
Superfamily:Cytidine deaminase-like
Family:AICAR transformylase domain of bifunctional purine biosynthesis enzyme ATIC
39d1tfra2



not modelled 19.1 29
Fold:PIN domain-like
Superfamily:PIN domain-like
Family:5' to 3' exonuclease catalytic domain
40d1a77a2



not modelled 18.3 13
Fold:PIN domain-like
Superfamily:PIN domain-like
Family:5' to 3' exonuclease catalytic domain
41d1cmwa2



not modelled 17.0 39
Fold:PIN domain-like
Superfamily:PIN domain-like
Family:5' to 3' exonuclease catalytic domain
42c3q8lA_



not modelled 15.8 21
PDB header:hydrolase/dna
Chain: A: PDB Molecule:flap endonuclease 1;
PDBTitle: crystal structure of human flap endonuclease fen1 (wt) in complex with2 substrate 5'-flap dna, sm3+, and k+
43c1zczA_



not modelled 14.9 17
PDB header:transferase/hydrolase
Chain: A: PDB Molecule:bifunctional purine biosynthesis protein purh;
PDBTitle: crystal structure of phosphoribosylaminoimidazolecarboxamide2 formyltransferase / imp cyclohydrolase (tm1249) from thermotoga3 maritima at 1.88 a resolution
44d1ul1x2



not modelled 14.1 21
Fold:PIN domain-like
Superfamily:PIN domain-like
Family:5' to 3' exonuclease catalytic domain
45c1thzA_



not modelled 14.0 20
PDB header:transferase, hydrolase
Chain: A: PDB Molecule:bifunctional purine biosynthesis protein purh;
PDBTitle: crystal structure of avian aicar transformylase in complex2 with a novel inhibitor identified by virtual ligand3 screening
46c4g25A_



not modelled 12.0 18
PDB header:rna binding protein
Chain: A: PDB Molecule:pentatricopeptide repeat-containing protein at2g32230,
PDBTitle: crystal structure of proteinaceous rnase p 1 (prorp1) from a.2 thaliana, semet substituted form with sr
47c4ehiB_



not modelled 11.8 33
PDB header:hydrolase,transferase
Chain: B: PDB Molecule:bifunctional purine biosynthesis protein purh;
PDBTitle: an x-ray crystal structure of a putative bifunctional2 phosphoribosylaminoimidazolecarboxamide formyltransferase/imp3 cyclohydrolase
48c4a1oB_



not modelled 11.5 23
PDB header:transferase-hydrolase
Chain: B: PDB Molecule:bifunctional purine biosynthesis protein purh;
PDBTitle: crystal structure of mycobacterium tuberculosis purh complexed with2 aicar and a novel nucleotide cfair, at 2.48 a resolution.
49d1rxwa2



not modelled 10.6 13
Fold:PIN domain-like
Superfamily:PIN domain-like
Family:5' to 3' exonuclease catalytic domain
50d1mc8a2



not modelled 9.7 13
Fold:PIN domain-like
Superfamily:PIN domain-like
Family:5' to 3' exonuclease catalytic domain
51c1rxvA_



not modelled 9.4 13
PDB header:hydrolase/dna
Chain: A: PDB Molecule:flap structure-specific endonuclease;
PDBTitle: crystal structure of a. fulgidus fen-1 bound to dna
52d1xo1a2



not modelled 9.1 13
Fold:PIN domain-like
Superfamily:PIN domain-like
Family:5' to 3' exonuclease catalytic domain
53c3zddA_



not modelled 8.9 30
PDB header:hydrolase/dna
Chain: A: PDB Molecule:protein xni;
PDBTitle: structure of e. coli exoix in complex with the palindromic 5ov62 oligonucleotide and potassium
54c3al0B_



not modelled 8.6 22
PDB header:ligase/rna
Chain: B: PDB Molecule:aspartyl/glutamyl-trna(asn/gln) amidotransferase subunit b;
PDBTitle: crystal structure of the glutamine transamidosome from thermotoga2 maritima in the glutamylation state.
55c3kfuF_



not modelled 8.5 17
PDB header:ligase/rna
Chain: F: PDB Molecule:aspartyl/glutamyl-trna(asn/gln) amidotransferase subunit b;
PDBTitle: crystal structure of the transamidosome
56c4wj3K_



not modelled 8.4 22
PDB header:ligase/rna
Chain: K: PDB Molecule:aspartyl/glutamyl-trna(asn/gln) amidotransferase subunit b;
PDBTitle: crystal structure of the asparagine transamidosome from pseudomonas2 aeruginosa
57c3kfuI_



not modelled 8.3 17
PDB header:ligase/rna
Chain: I: PDB Molecule:aspartyl/glutamyl-trna(asn/gln) amidotransferase subunit b;
PDBTitle: crystal structure of the transamidosome
58c4wj3H_



not modelled 8.2 22
PDB header:ligase/rna
Chain: H: PDB Molecule:aspartyl/glutamyl-trna(asn/gln) amidotransferase subunit b;
PDBTitle: crystal structure of the asparagine transamidosome from pseudomonas2 aeruginosa
59c4wj3E_



not modelled 8.2 22
PDB header:ligase/rna
Chain: E: PDB Molecule:aspartyl/glutamyl-trna(asn/gln) amidotransferase subunit b;
PDBTitle: crystal structure of the asparagine transamidosome from pseudomonas2 aeruginosa
60c4wj3B_



not modelled 8.2 22
PDB header:ligase/rna
Chain: B: PDB Molecule:aspartyl/glutamyl-trna(asn/gln) amidotransferase subunit b;
PDBTitle: crystal structure of the asparagine transamidosome from pseudomonas2 aeruginosa
61c1jqsB_



not modelled 8.0 23
PDB header:ribosome
Chain: B: PDB Molecule:elongation factor g;
PDBTitle: fitting of l11 protein and elongation factor g (domain g'2 and v) in the cryo-em map of e. coli 70s ribosome bound3 with ef-g and gmppcp, a nonhydrolysable gtp analog
62c2g5iB_



not modelled 8.0 22
PDB header:ligase
Chain: B: PDB Molecule:aspartyl/glutamyl-trna(asn/gln) amidotransferase
PDBTitle: structure of trna-dependent amidotransferase gatcab2 complexed with adp-alf4
63c1a77A_



not modelled 7.7 13
PDB header:5'-3' exo/endo nuclease
Chain: A: PDB Molecule:flap endonuclease-1 protein;
PDBTitle: flap endonuclease-1 from methanococcus jannaschii
64c2izoA_



not modelled 7.6 13
PDB header:hydrolase
Chain: A: PDB Molecule:flap structure-specific endonuclease;
PDBTitle: structure of an archaeal pcna1-pcna2-fen1 complex
65c3h0mE_



not modelled 7.5 22
PDB header:ligase
Chain: E: PDB Molecule:aspartyl/glutamyl-trna(asn/gln) amidotransferase
PDBTitle: structure of trna-dependent amidotransferase gatcab from2 aquifex aeolicus
66d1oy5a_



not modelled 7.4 13
Fold:alpha/beta knot
Superfamily:alpha/beta knot
Family:tRNA(m1G37)-methyltransferase TrmD
67c1oy5B_



not modelled 7.4 13
PDB header:transferase
Chain: B: PDB Molecule:trna (guanine-n(1)-)-methyltransferase;
PDBTitle: crystal structure of trna (m1g37) methyltransferase from aquifex2 aeolicus
68c1b43A_



not modelled 7.1 13
PDB header:transferase
Chain: A: PDB Molecule:protein (fen-1);
PDBTitle: fen-1 from p. furiosus
69c4n0iB_



not modelled 6.8 31
PDB header:ligase
Chain: B: PDB Molecule:glutamyl-trna(gln) amidotransferase subunit b,
PDBTitle: crystal structure of s. cerevisiae mitochondrial gatfab in complex2 with glutamine
70c3ip4B_



not modelled 6.2 22
PDB header:ligase
Chain: B: PDB Molecule:aspartyl/glutamyl-trna(asn/gln) amidotransferase subunit b;
PDBTitle: the high resolution structure of gatcab

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