Phyre Home Retrieve Phyre Job Id
Emailmdejesus@rockefeller.edu
DescriptionRVBD0583c_(lpqN)_678392_679078
DateFri Jul 26 01:50:14 BST 2019
Unique Job IDc89360368c2ac0f7
SequenceMKHFTAAVAT ... Download FASTA
Job Typenormal
Job Expiry

Summary 

Top model
Image coloured by rainbow N → C terminus
Model dimensions (Å):X:39.796 Y:45.829 Z:49.193
Model (left) based on template c4ol4A_
Top template information
PDB header:lipid binding protein
Chain: A: PDB Molecule:proline-rich 28 kda antigen;
PDBTitle: crystal structure of secreted proline rich antigen mtc28 (rv0040c)2 from mycobacterium tuberculosis
Confidence and coverage
Confidence:100.0% Coverage: 75%
172 residues ( 75% of your sequence) have been modelled with 100.0% confidence by the single highest scoring template.
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Sequence analysis 

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Secondary structure and disorder prediction [Show] 

Domain analysis [Show] 

Detailed template information [Hide] 

 

#
Template Alignment Coverage3D Model Confidence
% i.d. Template Information
1c4ol4A_
100.0 17
PDB header:lipid binding protein
Chain: A: PDB Molecule:proline-rich 28 kda antigen;
PDBTitle: crystal structure of secreted proline rich antigen mtc28 (rv0040c)2 from mycobacterium tuberculosis
2c3lydA_
100.0 18
PDB header:structural genomics, unknown function
Chain: A: PDB Molecule:uncharacterized protein;
PDBTitle: crystal structure of putative uncharacterized protein from jonesia2 denitrificans
3d1tu1a_
98.7 19
Fold:Mog1p/PsbP-like
Superfamily:Mog1p/PsbP-like
Family:PA0094-like
4c2lnjA_
97.2 13
PDB header:photosynthesis
Chain: A: PDB Molecule:putative uncharacterized protein sll1418;
PDBTitle: solution structure of cyanobacterial psbp (cyanop) from synechocystis2 sp. pcc 6803
5c2xb3A_
91.6 11
PDB header:photosynthesis
Chain: A: PDB Molecule:psbp protein;
PDBTitle: the structure of cyanobacterial psbp
6c5ag8A_
85.9 19
PDB header:hydrolase
Chain: A: PDB Molecule:gingipain r2;
PDBTitle: crystal structure of a mutant (665i6h) of the c-terminal2 domain of rgpb
7d1v2ba_
81.6 17
Fold:Mog1p/PsbP-like
Superfamily:Mog1p/PsbP-like
Family:PsbP-like
8c2vu4A_
67.8 13
PDB header:photosynthesis
Chain: A: PDB Molecule:oxygen-evolving enhancer protein 2;
PDBTitle: structure of psbp protein from spinacia oleracea at 1.98 a2 resolution
9c1e0mA_
50.1 22
PDB header:de novo protein
Chain: A: PDB Molecule:wwprototype;
PDBTitle: prototype ww domain
10c6j69A_
49.6 44
PDB header:cell cycle
Chain: A: PDB Molecule:protein kibra;
PDBTitle: structure of kibra and dendrin complex
11c1ymzA_
45.5 22
PDB header:unknown function
Chain: A: PDB Molecule:cc45;
PDBTitle: cc45, an artificial ww domain designed using statistical2 coupling analysis
12c6h9cD_
43.6 26
PDB header:virus
Chain: D: PDB Molecule:vp7;
PDBTitle: cryo-em structure of archaeal extremophilic internal membrane-2 containing haloarcula californiae icosahedral virus 1 (hciv-1) at3 3.74 angstroms resolution.
13d1c3ga1
39.7 17
Fold:HSP40/DnaJ peptide-binding domain
Superfamily:HSP40/DnaJ peptide-binding domain
Family:HSP40/DnaJ peptide-binding domain
14c1wr7A_
32.7 29
PDB header:ligase
Chain: A: PDB Molecule:nedd4-2;
PDBTitle: solution structure of the third ww domain of nedd4-2
15d2jmfa1
28.2 43
Fold:WW domain-like
Superfamily:WW domain
Family:WW domain
16c4ba8A_
23.9 10
PDB header:immune system
Chain: A: PDB Molecule:ig mu chain c region secreted form;
PDBTitle: high resolution nmr structure of the c mu3 domain from igm
17c1wmvA_
22.6 11
PDB header:oxidoreductase, apoptosis
Chain: A: PDB Molecule:ww domain containing oxidoreductase;
PDBTitle: solution structure of the second ww domain of wwox
18d1dr9a2
22.4 25
Fold:Immunoglobulin-like beta-sandwich
Superfamily:Immunoglobulin
Family:C2 set domains
19c2ysbA_
21.9 28
PDB header:protein binding
Chain: A: PDB Molecule:salvador homolog 1 protein;
PDBTitle: solution structure of the first ww domain from the mouse2 salvador homolog 1 protein (sav1)
20d1tk7a2
21.8 43
Fold:WW domain-like
Superfamily:WW domain
Family:WW domain
21c5ydxA_
not modelled 21.6 37
PDB header:signaling protein
Chain: A: PDB Molecule:ww domain with ppxy motif;
PDBTitle: nmr structure of yap1-2 ww1 domain with lats1 ppxy motif complex
22d1tk7a1
not modelled 21.6 57
Fold:WW domain-like
Superfamily:WW domain
Family:WW domain
23c1yiuA_
not modelled 21.1 29
PDB header:ligase
Chain: A: PDB Molecule:itchy e3 ubiquitin protein ligase;
PDBTitle: itch e3 ubiquitin ligase ww3 domain
24c2jmfA_
not modelled 20.9 43
PDB header:ligase/signaling protein
Chain: A: PDB Molecule:e3 ubiquitin-protein ligase suppressor of deltex;
PDBTitle: solution structure of the su(dx) ww4- notch py peptide2 complex
25c2mdwA_
not modelled 20.4 33
PDB header:de novo protein
Chain: A: PDB Molecule:designed protein;
PDBTitle: nmr structure of a strand-swapped dimer of the ww domain
26c2kxoA_
not modelled 20.2 10
PDB header:cell cycle
Chain: A: PDB Molecule:cell division topological specificity factor;
PDBTitle: solution nmr structure of the cell division regulator mine protein2 from neisseria gonorrhoeae
27d1k9ra_
not modelled 19.1 38
Fold:WW domain-like
Superfamily:WW domain
Family:WW domain
28c5ewoA_
not modelled 19.1 17
PDB header:viral protein
Chain: A: PDB Molecule:structural protein;
PDBTitle: crystal structure of the human astrovirus 1 capsid protein spike2 domain at 0.95-a resolution
29c5yfgA_
not modelled 18.8 16
PDB header:protein transport
Chain: A: PDB Molecule:ran guanine nucleotide release factor;
PDBTitle: solution structure of human mog1
30c3tm6E_
not modelled 18.6 17
PDB header:immune system
Chain: E: PDB Molecule:beta-2-microglobulin;
PDBTitle: crystal structure of the beta-2 microglobulin dimc50 disulphide-linked2 homodimer mutant
31c3tm6C_
not modelled 18.6 17
PDB header:immune system
Chain: C: PDB Molecule:beta-2-microglobulin;
PDBTitle: crystal structure of the beta-2 microglobulin dimc50 disulphide-linked2 homodimer mutant
32c3tm6H_
not modelled 18.6 17
PDB header:immune system
Chain: H: PDB Molecule:beta-2-microglobulin;
PDBTitle: crystal structure of the beta-2 microglobulin dimc50 disulphide-linked2 homodimer mutant
33c3tm6F_
not modelled 18.6 17
PDB header:immune system
Chain: F: PDB Molecule:beta-2-microglobulin;
PDBTitle: crystal structure of the beta-2 microglobulin dimc50 disulphide-linked2 homodimer mutant
34c3tm6G_
not modelled 18.6 17
PDB header:immune system
Chain: G: PDB Molecule:beta-2-microglobulin;
PDBTitle: crystal structure of the beta-2 microglobulin dimc50 disulphide-linked2 homodimer mutant
35c2yshA_
not modelled 18.3 29
PDB header:protein binding
Chain: A: PDB Molecule:growth-arrest-specific protein 7;
PDBTitle: solution structure of the ww domain from the human growth-2 arrest-specific protein 7, gas-7
36c3ov6A_
not modelled 18.2 19
PDB header:immune system
Chain: A: PDB Molecule:beta-2-microglobulin, t-cell surface glycoprotein cd1c, t-
PDBTitle: cd1c in complex with mpm (mannosyl-beta1-phosphomycoketide)
37c2n5xA_
not modelled 17.8 39
PDB header:chaperone
Chain: A: PDB Molecule:hsp90 co-chaperone cdc37;
PDBTitle: c-terminal domain of cdc37 cochaperone
38c2yscA_
not modelled 17.7 43
PDB header:protein binding
Chain: A: PDB Molecule:amyloid beta a4 precursor protein-binding family
PDBTitle: solution structure of the ww domain from the human amyloid2 beta a4 precursor protein-binding family b member 3, apbb3
39c1wr4A_
not modelled 17.5 29
PDB header:ligase
Chain: A: PDB Molecule:ubiquitin-protein ligase nedd4-2;
PDBTitle: solution structure of the second ww domain of nedd4-2
40c2lawA_
not modelled 17.4 29
PDB header:signaling protein/transcription
Chain: A: PDB Molecule:yorkie homolog;
PDBTitle: structure of the second ww domain from human yap in complex with a2 human smad1 derived peptide
41c3l4hA_
not modelled 16.9 17
PDB header:protein binding
Chain: A: PDB Molecule:e3 ubiquitin-protein ligase hecw1;
PDBTitle: helical box domain and second ww domain of the human e3 ubiquitin-2 protein ligase hecw1
42c2lb0A_
not modelled 16.6 14
PDB header:signaling protein/transcription
Chain: A: PDB Molecule:e3 ubiquitin-protein ligase smurf1;
PDBTitle: structure of the first ww domain of human smurf1 in complex with a di-2 phosphorylated human smad1 derived peptide
43c2lazA_
not modelled 16.6 14
PDB header:signaling protein/transcription
Chain: A: PDB Molecule:e3 ubiquitin-protein ligase smurf1;
PDBTitle: structure of the first ww domain of human smurf1 in complex with a2 mono-phosphorylated human smad1 derived peptide
44c3s6cA_
not modelled 16.5 17
PDB header:immune system, lipid binding protein
Chain: A: PDB Molecule:beta-2-microglobulin, t-cell surface glycoprotein cd1e,
PDBTitle: structure of human cd1e
45c2ez5W_
not modelled 15.9 43
PDB header:signalling protein,ligase
Chain: W: PDB Molecule:e3 ubiquitin-protein ligase nedd4;
PDBTitle: solution structure of the dnedd4 ww3* domain- comm lpsy2 peptide complex
46c2kykA_
not modelled 14.5 24
PDB header:ligase
Chain: A: PDB Molecule:e3 ubiquitin-protein ligase itchy homolog;
PDBTitle: the sandwich region between two lmp2a py motif regulates the2 interaction between aip4ww2domain and py motif
47c2ysfA_
not modelled 14.0 29
PDB header:protein binding
Chain: A: PDB Molecule:e3 ubiquitin-protein ligase itchy homolog;
PDBTitle: solution structure of the fourth ww domain from the human2 e3 ubiquitin-protein ligase itchy homolog, itch
48c2ysdA_
not modelled 14.0 24
PDB header:protein binding
Chain: A: PDB Molecule:membrane-associated guanylate kinase, ww and pdz
PDBTitle: solution structure of the first ww domain from the human2 membrane-associated guanylate kinase, ww and pdz domain-3 containing protein 1. magi-1
49c4rohA_
not modelled 13.5 43
PDB header:ligase
Chain: A: PDB Molecule:e3 ubiquitin-protein ligase itchy homolog;
PDBTitle: crystal structure of tandem ww domains of itch in complex with txnip2 peptide
50c2l4jA_
not modelled 13.4 26
PDB header:transcription
Chain: A: PDB Molecule:yes-associated protein 2 (yap2);
PDBTitle: yap ww2
51c4rclB_
not modelled 13.3 8
PDB header:chaperone
Chain: B: PDB Molecule:espg3;
PDBTitle: structure of espg3 chaperone from the type vii (esx-3) secretion2 system, space group p43212
52c5xmcA_
not modelled 13.2 43
PDB header:ligase
Chain: A: PDB Molecule:e3 ubiquitin-protein ligase itchy;
PDBTitle: crystal structure of the auto-inhibited nedd4 family e3 ligase itch
53c3iv6C_
not modelled 13.2 19
PDB header:oxidoreductase
Chain: C: PDB Molecule:putative zn-dependent alcohol dehydrogenase;
PDBTitle: crystal structure of putative zn-dependent alcohol dehydrogenases from2 rhodobacter sphaeroides.
54d1f8ab1
not modelled 13.1 29
Fold:WW domain-like
Superfamily:WW domain
Family:WW domain
55c2kywA_
not modelled 13.1 15
PDB header:cell adhesion
Chain: A: PDB Molecule:adhesion exoprotein;
PDBTitle: solution nmr structure of a domain of adhesion exoprotein from2 pediococcus pentosaceus, northeast structural genomics consortium3 target ptr41o
56c3bewE_
not modelled 12.9 21
PDB header:immune system
Chain: E: PDB Molecule:beta-2-microglobulin;
PDBTitle: 10mer crystal structure of chicken mhc class i haplotype b21
57d1i5hw_
not modelled 12.6 19
Fold:WW domain-like
Superfamily:WW domain
Family:WW domain
58c2dwvB_
not modelled 12.5 21
PDB header:protein binding
Chain: B: PDB Molecule:salvador homolog 1 protein;
PDBTitle: solution structure of the second ww domain from mouse2 salvador homolog 1 protein (mww45)
59c5ydyA_
not modelled 12.5 29
PDB header:signaling protein
Chain: A: PDB Molecule:ww2 domain and ppxy motif complex;
PDBTitle: nmr structure of yap1-2 ww2 domain with lats1 ppxy motif complex
60c3vwkB_
not modelled 12.1 21
PDB header:immune system
Chain: B: PDB Molecule:beta-2-microglobulin;
PDBTitle: ternary crystal structure of the human nkt tcr-cd1d-4'deoxy-alpha-2 galactosylceramide complex
61d2b0ga1
not modelled 12.0 15
Fold:Ferredoxin-like
Superfamily:RNA-binding domain, RBD
Family:Canonical RBD
62c3tm6A_
not modelled 11.7 15
PDB header:immune system
Chain: A: PDB Molecule:beta-2-microglobulin;
PDBTitle: crystal structure of the beta-2 microglobulin dimc50 disulphide-linked2 homodimer mutant
63c3tm6D_
not modelled 11.7 15
PDB header:immune system
Chain: D: PDB Molecule:beta-2-microglobulin;
PDBTitle: crystal structure of the beta-2 microglobulin dimc50 disulphide-linked2 homodimer mutant
64c3tm6B_
not modelled 11.7 15
PDB header:immune system
Chain: B: PDB Molecule:beta-2-microglobulin;
PDBTitle: crystal structure of the beta-2 microglobulin dimc50 disulphide-linked2 homodimer mutant
65d1jroa2
not modelled 11.6 16
Fold:beta-Grasp (ubiquitin-like)
Superfamily:2Fe-2S ferredoxin-like
Family:2Fe-2S ferredoxin domains from multidomain proteins
66c2djyA_
not modelled 11.6 22
PDB header:ligase/signaling protein
Chain: A: PDB Molecule:smad ubiquitination regulatory factor 2;
PDBTitle: solution structure of smurf2 ww3 domain-smad7 py peptide2 complex
67d1w8oa1
not modelled 11.4 21
Fold:Immunoglobulin-like beta-sandwich
Superfamily:E set domains
Family:E-set domains of sugar-utilizing enzymes
68c2qrsA_
not modelled 11.4 21
PDB header:immune system
Chain: A: PDB Molecule:h-2 class i histocompatibility antigen k-b alpha chain,
PDBTitle: crystal structure of a single chain trimer composed of the mhc i heavy2 chain h-2kb y84a, beta-2microglobulin, and ovalbumin-derived peptide.
69d1nmva1
not modelled 11.2 29
Fold:WW domain-like
Superfamily:WW domain
Family:WW domain
70c2n8tA_
not modelled 11.1 18
PDB header:ligase/peptide
Chain: A: PDB Molecule:e3 ubiquitin-protein ligase nedd4;
PDBTitle: solution structure of the rnedd4 ww2 domain-cx43ct peptide complex by2 nmr
71c1tk7A_
not modelled 10.9 57
PDB header:signaling protein
Chain: A: PDB Molecule:cg4244-pb;
PDBTitle: nmr structure of ww domains (ww3-4) from suppressor of2 deltex
72d1prtc2
not modelled 10.7 23
Fold:C-type lectin-like
Superfamily:C-type lectin-like
Family:Aerolysin/Pertussis toxin (APT) domain
73c2kq0A_
not modelled 10.6 33
PDB header:ligase
Chain: A: PDB Molecule:e3 ubiquitin-protein ligase nedd4;
PDBTitle: human nedd4 3rd ww domain complex with ebola zaire virus matrix2 protein vp40 derived peptide ilptappeymea
74c2zajA_
not modelled 10.6 22
PDB header:protein binding
Chain: A: PDB Molecule:membrane-associated guanylate kinase, ww and pdz
PDBTitle: solution structure of the short-isoform of the second ww2 domain from the human membrane-associated guanylate kinase,3 ww and pdz domain-containing protein 1 (magi-1)
75c2ysgA_
not modelled 10.0 18
PDB header:protein binding
Chain: A: PDB Molecule:syntaxin-binding protein 4;
PDBTitle: solution structure of the ww domain from the human syntaxin-2 binding protein 4
76c3pqyB_
not modelled 9.9 15
PDB header:immune system
Chain: B: PDB Molecule:beta-2-microglobulin;
PDBTitle: crystal structure of 6218 tcr in complex with the h2db-pa224
77c3pqyG_
not modelled 9.9 15
PDB header:immune system
Chain: G: PDB Molecule:beta-2-microglobulin;
PDBTitle: crystal structure of 6218 tcr in complex with the h2db-pa224
78c3vxvA_
not modelled 9.7 67
PDB header:hydrolase/dna
Chain: A: PDB Molecule:methyl-cpg-binding domain protein 4;
PDBTitle: crystal structure of methyl cpg binding domain of mbd4 in complex with2 the 5mcg/tg sequence
79d2ysca1
not modelled 9.7 25
Fold:WW domain-like
Superfamily:WW domain
Family:WW domain
80c5kouB_
not modelled 9.6 27
PDB header:viral protein
Chain: B: PDB Molecule:capsid polyprotein vp25;
PDBTitle: crystal structure of the human astrovirus 2 capsid protein spike2 domain at 1.87-a resolution
81d2ho2a1
not modelled 9.5 18
Fold:WW domain-like
Superfamily:WW domain
Family:WW domain
82c2w6iH_
not modelled 9.4 26
PDB header:hydrolase
Chain: H: PDB Molecule:f1-atpase delta subunit;
PDBTitle: low resolution structures of bovine mitochondrial f1-atpase during2 controlled dehydration: hydration state 4b.
83d2itka1
not modelled 9.3 33
Fold:WW domain-like
Superfamily:WW domain
Family:WW domain
84d1pina1
not modelled 9.2 29
Fold:WW domain-like
Superfamily:WW domain
Family:WW domain
85c2dmvA_
not modelled 9.2 18
PDB header:ligase
Chain: A: PDB Molecule:itchy homolog e3 ubiquitin protein ligase;
PDBTitle: solution structure of the second ww domain of itchy homolog2 e3 ubiquitin protein ligase (itch)
86c3lz8A_
not modelled 9.1 16
PDB header:chaperone
Chain: A: PDB Molecule:putative chaperone dnaj;
PDBTitle: structure of a putative chaperone dnaj from klebsiella pneumoniae2 subsp. pneumoniae mgh 78578 at 2.9 a resolution.
87c2c36B_
not modelled 8.8 27
PDB header:viral protein
Chain: B: PDB Molecule:glycoprotein d hsv-1;
PDBTitle: structure of unliganded hsv gd reveals a mechanism for receptor-2 mediated activation of virus entry
88c3qsqA_
not modelled 8.6 23
PDB header:viral protein
Chain: A: PDB Molecule:capsid polyprotein;
PDBTitle: crystal structure of the projection domain of the human astrovirus2 capsid protein
89c3r27A_
not modelled 8.2 17
PDB header:protein binding
Chain: A: PDB Molecule:heterogeneous nuclear ribonucleoprotein l;
PDBTitle: crystal structure of the first rrm domain of heterogeneous nuclear2 ribonucleoprotein l (hnrnp l)
90d1eh9a2
not modelled 8.0 18
Fold:Glycosyl hydrolase domain
Superfamily:Glycosyl hydrolase domain
Family:alpha-Amylases, C-terminal beta-sheet domain
91d2f21a1
not modelled 7.9 19
Fold:WW domain-like
Superfamily:WW domain
Family:WW domain
92c2xksA_
not modelled 7.8 18
PDB header:immune system
Chain: A: PDB Molecule:beta-2-microglobulin;
PDBTitle: prion-like conversion during amyloid formation at atomic resolution
93c3rgvD_
not modelled 7.8 16
PDB header:immune system
Chain: D: PDB Molecule:beta-2-microglobulin;
PDBTitle: a single tcr bound to mhci and mhc ii reveals switchable tcr2 conformers
94d1v97a2
not modelled 7.7 32
Fold:beta-Grasp (ubiquitin-like)
Superfamily:2Fe-2S ferredoxin-like
Family:2Fe-2S ferredoxin domains from multidomain proteins
95c2xkuA_
not modelled 7.6 20
PDB header:immune system
Chain: A: PDB Molecule:beta-2-microglobulin;
PDBTitle: prion-like conversion during amyloid formation at atomic resolution
96c2kxqA_
not modelled 7.6 14
PDB header:protein binding
Chain: A: PDB Molecule:e3 ubiquitin-protein ligase smurf2;
PDBTitle: solution structure of smurf2 ww2 and ww3 bound to smad7 py motif2 containing peptide
97c3le4A_
not modelled 7.5 67
PDB header:nuclear protein
Chain: A: PDB Molecule:microprocessor complex subunit dgcr8;
PDBTitle: crystal structure of the dgcr8 dimerization domain
98d1i8gb_
not modelled 7.5 29
Fold:WW domain-like
Superfamily:WW domain
Family:WW domain
99c2x89F_
not modelled 7.4 21
PDB header:immune system
Chain: F: PDB Molecule:beta-2-microglobulin;
PDBTitle: structure of the beta2_microglobulin involved in amyloidogenesis

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