Phyre Home Retrieve Phyre Job Id
Emailmdejesus@rockefeller.edu
DescriptionRVBD0590_(mce2B)_688035_688862
DateFri Jul 26 01:50:14 BST 2019
Unique Job ID5a2fb324602148dd
SequenceMKTTGTTIKL ... Download FASTA
Job Typenormal
Job Expiry

Summary 

Top model
Image coloured by rainbow N → C terminus
Model dimensions (Å):X:45.910 Y:39.852 Z:68.181
Model (left) based on template c6ic4C_
Top template information
PDB header:protein transport
Chain: C: PDB Molecule:toluene tolerance efflux transporter (abc superfamily,
PDBTitle: cryo-em structure of the a. baumannii mla complex at 8.7 a resolution
Confidence and coverage
Confidence: 99.9% Coverage: 48%
131 residues ( 48% of your sequence) have been modelled with 99.9% confidence by the single highest scoring template.
Additional confident templates have been detected (see Domain analysis) which cover other regions of your sequence.
266 residues ( 97%) could be modelled at >90% confidence using multiple-templates.
You may wish to try resubmitting your sequence in "intensive" mode to model more of your sequence.
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Sequence analysis 

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Secondary structure and disorder prediction [Show] 

Domain analysis [Show] 

Detailed template information [Hide] 

 

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Template Alignment Coverage3D Model Confidence
% i.d. Template Information
1c6ic4C_



99.9 28
PDB header:protein transport
Chain: C: PDB Molecule:toluene tolerance efflux transporter (abc superfamily,
PDBTitle: cryo-em structure of the a. baumannii mla complex at 8.7 a resolution
2c5uw8C_



99.7 23
PDB header:transport protein
Chain: C: PDB Molecule:probable phospholipid abc transporter-binding protein mlad;
PDBTitle: structure of e. coli mce protein mlad, core mce domain
3c5uvnB_



99.5 18
PDB header:transport protein
Chain: B: PDB Molecule:paraquat-inducible protein b;
PDBTitle: structure of e. coli mce protein pqib, periplasmic domain
4c5uvnC_



99.5 18
PDB header:transport protein
Chain: C: PDB Molecule:paraquat-inducible protein b;
PDBTitle: structure of e. coli mce protein pqib, periplasmic domain
5c5uvnD_



99.5 18
PDB header:transport protein
Chain: D: PDB Molecule:paraquat-inducible protein b;
PDBTitle: structure of e. coli mce protein pqib, periplasmic domain
6c5uvnF_



99.5 18
PDB header:transport protein
Chain: F: PDB Molecule:paraquat-inducible protein b;
PDBTitle: structure of e. coli mce protein pqib, periplasmic domain
7c5uvnE_



99.5 18
PDB header:transport protein
Chain: E: PDB Molecule:paraquat-inducible protein b;
PDBTitle: structure of e. coli mce protein pqib, periplasmic domain
8c5uvnA_



99.5 18
PDB header:transport protein
Chain: A: PDB Molecule:paraquat-inducible protein b;
PDBTitle: structure of e. coli mce protein pqib, periplasmic domain
9c1deqF_



91.1 13
PDB header:blood clotting
Chain: F: PDB Molecule:fibrinogen (gamma chain);
PDBTitle: the crystal structure of modified bovine fibrinogen (at ~42 angstrom resolution)
10c1qu7A_



90.3 7
PDB header:signaling protein
Chain: A: PDB Molecule:methyl-accepting chemotaxis protein i;
PDBTitle: four helical-bundle structure of the cytoplasmic domain of a serine2 chemotaxis receptor
11c3g67A_



89.7 7
PDB header:signaling protein
Chain: A: PDB Molecule:methyl-accepting chemotaxis protein;
PDBTitle: crystal structure of a soluble chemoreceptor from thermotoga2 maritima
12c2qf4A_



89.7 14
PDB header:structural protein
Chain: A: PDB Molecule:cell shape determining protein mrec;
PDBTitle: high resolution structure of the major periplasmic domain from the2 cell shape-determining filament mrec (orthorhombic form)
13c6b7nC_



85.7 10
PDB header:viral protein
Chain: C: PDB Molecule:spike protein;
PDBTitle: cryo-electron microscopy structure of porcine delta coronavirus spike2 protein in the pre-fusion state
14c2wpqA_



79.7 7
PDB header:membrane protein
Chain: A: PDB Molecule:trimeric autotransporter adhesin fragment;
PDBTitle: salmonella enterica sada 479-519 fused to gcn4 adaptors (sadak3, in-2 register fusion)
15c2j5uB_



79.5 16
PDB header:cell shape regulation
Chain: B: PDB Molecule:mrec protein;
PDBTitle: mrec lysteria monocytogenes
16c6gajA_



79.4 14
PDB header:viral protein
Chain: A: PDB Molecule:outer capsid protein sigma-1;
PDBTitle: crystal structure of the t1l reovirus sigma1 coiled coil tail (iodide)
17c6nzkB_



77.0 9
PDB header:viral protein
Chain: B: PDB Molecule:spike surface glycoprotein;
PDBTitle: structural basis for human coronavirus attachment to sialic acid2 receptors
18c5x5bB_



76.0 10
PDB header:viral protein
Chain: B: PDB Molecule:spike glycoprotein;
PDBTitle: prefusion structure of sars-cov spike glycoprotein, conformation 2
19c3jclC_



73.4 9
PDB header:viral protein
Chain: C: PDB Molecule:spike glycoprotein;
PDBTitle: cryo-electron microscopy structure of a coronavirus spike glycoprotein2 trimer
20c4e40A_



69.7 9
PDB header:transport protein
Chain: A: PDB Molecule:putative uncharacterized protein;
PDBTitle: the haptoglobin-hemoglobin receptor of trypanosoma congolense
21c6nb3B_



not modelled 68.7 7
PDB header:virus
Chain: B: PDB Molecule:spike glycoprotein;
PDBTitle: mers-cov complex with human neutralizing lca60 antibody fab fragment2 (state 1)
22c1m1jA_



not modelled 67.7 17
PDB header:blood clotting
Chain: A: PDB Molecule:fibrinogen alpha subunit;
PDBTitle: crystal structure of native chicken fibrinogen with two different2 bound ligands
23c6cs2A_



not modelled 67.4 10
PDB header:viral protein/hydrolase
Chain: A: PDB Molecule:spike glycoprotein,fibritin;
PDBTitle: sars spike glycoprotein - human ace2 complex, stabilized variant, all2 ace2-bound particles
24c1ei3E_



not modelled 66.8 9
PDB header:blood clotting
Chain: E: PDB Molecule:fibrinogen;
PDBTitle: crystal structure of native chicken fibrinogen
25c3lnrA_



not modelled 66.7 3
PDB header:signaling protein
Chain: A: PDB Molecule:aerotaxis transducer aer2;
PDBTitle: crystal structure of poly-hamp domains from the p. aeruginosa soluble2 receptor aer2
26c3vjfA_



not modelled 64.9 7
PDB header:de novo protein
Chain: A: PDB Molecule:wa20;
PDBTitle: crystal structure of de novo 4-helix bundle protein wa20
27c1ei3C_



not modelled 63.4 8
PDB header:blood clotting
Chain: C: PDB Molecule:fibrinogen;
PDBTitle: crystal structure of native chicken fibrinogen
28c3zx6A_



not modelled 63.3 10
PDB header:signaling
Chain: A: PDB Molecule:hamp, methyl-accepting chemotaxis protein i;
PDBTitle: structure of hamp(af1503)-tsr fusion - hamp (a291v) mutant
29c2ch7A_



not modelled 63.0 7
PDB header:chemotaxis
Chain: A: PDB Molecule:methyl-accepting chemotaxis protein;
PDBTitle: crystal structure of the cytoplasmic domain of a bacterial2 chemoreceptor from thermotoga maritima
30c5xlrC_



not modelled 60.6 10
PDB header:viral protein
Chain: C: PDB Molecule:spike glycoprotein;
PDBTitle: structure of sars-cov spike glycoprotein
31c6cv0C_



not modelled 58.8 10
PDB header:viral protein
Chain: C: PDB Molecule:spike glycoprotein;
PDBTitle: cryo-electron microscopy structure of infectious bronchitis2 coronavirus spike protein
32c5szsC_



not modelled 58.3 11
PDB header:viral protein
Chain: C: PDB Molecule:spike glycoprotein;
PDBTitle: glycan shield and epitope masking of a coronavirus spike protein2 observed by cryo-electron microscopy
33c3cwgA_



not modelled 55.3 9
PDB header:transcription
Chain: A: PDB Molecule:signal transducer and activator of transcription
PDBTitle: unphosphorylated mouse stat3 core fragment
34c5zhyA_



not modelled 54.1 5
PDB header:viral protein
Chain: A: PDB Molecule:spike glycoprotein, spike glycoprotein;
PDBTitle: structural characterization of the hcov-229e fusion core
35c5wrgB_



not modelled 51.5 8
PDB header:virus like particle
Chain: B: PDB Molecule:spike glycoprotein;
PDBTitle: sars-cov spike glycoprotein
36c2gl2B_



not modelled 51.3 9
PDB header:cell adhesion
Chain: B: PDB Molecule:adhesion a;
PDBTitle: crystal structure of the tetra muntant (t66g,r67g,f68g,y69g) of2 bacterial adhesin fada
37c2ieqC_



not modelled 51.1 20
PDB header:viral protein
Chain: C: PDB Molecule:spike glycoprotein;
PDBTitle: core structure of s2 from the human coronavirus nl63 spike2 glycoprotein
38c3ghgK_



not modelled 50.8 7
PDB header:blood clotting
Chain: K: PDB Molecule:fibrinogen beta chain;
PDBTitle: crystal structure of human fibrinogen
39c1p68A_



not modelled 49.3 13
PDB header:de novo protein
Chain: A: PDB Molecule:de novo designed protein s-824;
PDBTitle: solution structure of s-824, a de novo designed four helix2 bundle
40c5cwsJ_



not modelled 49.3 6
PDB header:protein transport
Chain: J: PDB Molecule:nucleoporin nup49;
PDBTitle: crystal structure of the intact chaetomium thermophilum nsp1-nup49-2 nup57 channel nucleoporin heterotrimer bound to its nic96 nuclear3 pore complex attachment site
41c6b3oB_



not modelled 48.7 10
PDB header:viral protein
Chain: B: PDB Molecule:spike glycoprotein;
PDBTitle: tectonic conformational changes of a coronavirus spike glycoprotein2 promote membrane fusion
42c5i08A_



not modelled 47.7 11
PDB header:viral protein
Chain: A: PDB Molecule:spike glycoprotein, envelope glycoprotein chimera;
PDBTitle: prefusion structure of a human coronavirus spike protein
43c2d4yA_



not modelled 47.6 12
PDB header:structural protein
Chain: A: PDB Molecule:flagellar hook-associated protein 1;
PDBTitle: crystal structure of a 49k fragment of hap1 (flgk)
44c1kmiZ_



not modelled 46.2 10
PDB header:signaling protein
Chain: Z: PDB Molecule:chemotaxis protein chez;
PDBTitle: crystal structure of an e.coli chemotaxis protein, chez
45c1cz5A_



not modelled 45.8 12
PDB header:hydrolase
Chain: A: PDB Molecule:vcp-like atpase;
PDBTitle: nmr structure of vat-n: the n-terminal domain of vat (vcp-2 like atpase of thermoplasma)
46c5b0oB_



not modelled 43.6 35
PDB header:hydrolase/motor protein
Chain: B: PDB Molecule:flagellum-specific atp synthase;
PDBTitle: structure of the flih-flii complex
47c6gaoC_



not modelled 41.4 11
PDB header:viral protein
Chain: C: PDB Molecule:outer capsid protein sigma-1;
PDBTitle: crystal structure of the t1l reovirus sigma1 coiled coil tail and body
48d1st6a4



not modelled 40.5 14
Fold:Four-helical up-and-down bundle
Superfamily:alpha-catenin/vinculin-like
Family:alpha-catenin/vinculin
49c5x5fC_



not modelled 40.0 16
PDB header:viral protein
Chain: C: PDB Molecule:s protein;
PDBTitle: prefusion structure of mers-cov spike glycoprotein, conformation 2
50c4abxB_



not modelled 39.8 10
PDB header:dna binding protein
Chain: B: PDB Molecule:dna repair protein recn;
PDBTitle: crystal structure of deinococcus radiodurans recn coiled-2 coil domain
51c3ojaB_



not modelled 39.7 7
PDB header:protein binding
Chain: B: PDB Molecule:anopheles plasmodium-responsive leucine-rich repeat protein
PDBTitle: crystal structure of lrim1/apl1c complex
52c5j2lB_



not modelled 39.6 11
PDB header:de novo protein
Chain: B: PDB Molecule:protein design 2l4hc2_11;
PDBTitle: de novo design of protein homo-oligomers with modular hydrogen bond2 network-mediated specificity
53c2pjhB_



not modelled 37.2 17
PDB header:transport protein
Chain: B: PDB Molecule:transitional endoplasmic reticulum atpase;
PDBTitle: strctural model of the p97 n domain- npl4 ubd complex
54c6ezvX_



not modelled 36.5 12
PDB header:toxin
Chain: X: PDB Molecule:non-hemolytic enterotoxin lytic component l1;
PDBTitle: the cytotoxin maka from vibrio cholerae
55c2qihA_



not modelled 36.1 10
PDB header:cell adhesion
Chain: A: PDB Molecule:protein uspa1;
PDBTitle: crystal structure of 527-665 fragment of uspa1 protein from moraxella2 catarrhalis
56c1bf5A_



not modelled 35.9 7
PDB header:gene regulation/dna
Chain: A: PDB Molecule:signal transducer and activator of transcription 1-
PDBTitle: tyrosine phosphorylated stat-1/dna complex
57c2vs0B_



not modelled 35.4 10
PDB header:cell invasion
Chain: B: PDB Molecule:virulence factor esxa;
PDBTitle: structural analysis of homodimeric staphylococcal aureus2 virulence factor esxa
58c4iogD_



not modelled 34.2 14
PDB header:unknown function
Chain: D: PDB Molecule:secreted protein esxb;
PDBTitle: the crystal structure of a secreted protein esxb (wild-type, in p212 space group) from bacillus anthracis str. sterne
59c5dmaA_



not modelled 33.6 21
PDB header:hydrolase
Chain: A: PDB Molecule:atp-dependent dna helicase pcra;
PDBTitle: crystal structure of c-terminal tudor domain in pcra/uvrd helicase
60c3ghgI_



not modelled 33.4 13
PDB header:blood clotting
Chain: I: PDB Molecule:fibrinogen gamma chain;
PDBTitle: crystal structure of human fibrinogen
61d1wosa1



not modelled 32.4 18
Fold:Elongation factor/aminomethyltransferase common domain
Superfamily:Aminomethyltransferase beta-barrel domain
Family:Aminomethyltransferase beta-barrel domain
62c4lwsB_



not modelled 31.1 9
PDB header:unknown function
Chain: B: PDB Molecule:uncharacterized protein;
PDBTitle: esxa : esxb (semet) hetero-dimer from thermomonospora curvata
63c3zbhC_



not modelled 31.0 12
PDB header:unknown function
Chain: C: PDB Molecule:esxa;
PDBTitle: geobacillus thermodenitrificans esxa crystal form i
64c1kzlA_



not modelled 30.3 7
PDB header:transferase
Chain: A: PDB Molecule:riboflavin synthase;
PDBTitle: riboflavin synthase from s.pombe bound to2 carboxyethyllumazine
65c2nrjA_



not modelled 29.4 14
PDB header:toxin
Chain: A: PDB Molecule:hbl b protein;
PDBTitle: crystal structure of hemolysin binding component from2 bacillus cereus
66c3gvmA_



not modelled 29.3 11
PDB header:viral protein
Chain: A: PDB Molecule:putative uncharacterized protein sag1039;
PDBTitle: structure of the homodimeric wxg-100 family protein from streptococcus2 agalactiae
67c1v5vA_



not modelled 29.0 15
PDB header:transferase
Chain: A: PDB Molecule:aminomethyltransferase;
PDBTitle: crystal structure of a component of glycine cleavage system: t-protein2 from pyrococcus horikoshii ot3 at 1.5 a resolution
68c1deqD_



not modelled 28.7 14
PDB header:blood clotting
Chain: D: PDB Molecule:fibrinogen (alpha chain);
PDBTitle: the crystal structure of modified bovine fibrinogen (at ~42 angstrom resolution)
69c4wy4D_



not modelled 28.0 13
PDB header:membrane protein
Chain: D: PDB Molecule:synaptosomal-associated protein 29;
PDBTitle: crystal structure of autophagic snare complex
70c3vkhA_



not modelled 27.1 5
PDB header:motor protein
Chain: A: PDB Molecule:dynein heavy chain, cytoplasmic;
PDBTitle: x-ray structure of a functional full-length dynein motor domain
71c3j99M_



not modelled 27.0 9
PDB header:hydrolase
Chain: M: PDB Molecule:synaptosomal-associated protein 25;
PDBTitle: structure of 20s supercomplex determined by single particle2 cryoelectron microscopy (state iiib)
72c4qkwB_



not modelled 26.1 8
PDB header:signaling protein
Chain: B: PDB Molecule:muscle-related coiled-coil protein;
PDBTitle: crystal structure of the zebrafish cavin4a hr1 domain
73c3j6vL_



not modelled 25.8 15
PDB header:ribosome
Chain: L: PDB Molecule:28s ribosomal protein s12, mitochondrial;
PDBTitle: cryo-em structure of the small subunit of the mammalian mitochondrial2 ribosome
74c4qkvB_



not modelled 25.7 11
PDB header:transcription
Chain: B: PDB Molecule:polymerase i and transcript release factor;
PDBTitle: crystal structure of the mouse cavin1 hr1 domain
75c5bn4A_



not modelled 25.7 26
PDB header:hydrolase
Chain: A: PDB Molecule:v-type atp synthase alpha chain;
PDBTitle: structure of a unique atp synthase neqa-neqb in complex with anp from2 nanoarcheaum equitans
76c3vr5C_



not modelled 25.2 23
PDB header:hydrolase
Chain: C: PDB Molecule:v-type sodium atpase catalytic subunit a;
PDBTitle: crystal structure of nucleotide-free enterococcus hirae v1-atpase2 [ev1(l)]
77c3ur1C_



not modelled 25.1 9
PDB header:immune system
Chain: C: PDB Molecule:methyl-accepting chemotaxis protein;
PDBTitle: the structure of a ternary complex between chea domains p4 and p5 with2 chew and with a truncated fragment of tm14, a chemoreceptor analog3 from thermotoga maritima.
78c3a5dB_



not modelled 25.1 30
PDB header:hydrolase
Chain: B: PDB Molecule:v-type atp synthase alpha chain;
PDBTitle: inter-subunit interaction and quaternary rearrangement2 defined by the central stalk of prokaryotic v1-atpase
79c3j9vC_



not modelled 24.8 20
PDB header:hydrolase
Chain: C: PDB Molecule:v-type proton atpase catalytic subunit a;
PDBTitle: yeast v-atpase state 3
80c5u0pU_



not modelled 24.4 9
PDB header:transcription
Chain: U: PDB Molecule:mediator complex subunit 21;
PDBTitle: cryo-em structure of the transcriptional mediator
81c4lwsA_



not modelled 24.4 12
PDB header:unknown function
Chain: A: PDB Molecule:uncharacterized protein;
PDBTitle: esxa : esxb (semet) hetero-dimer from thermomonospora curvata
82d1pj5a1



not modelled 23.9 10
Fold:Elongation factor/aminomethyltransferase common domain
Superfamily:Aminomethyltransferase beta-barrel domain
Family:Aminomethyltransferase beta-barrel domain
83d1ykhb1



not modelled 23.5 9
Fold:Mediator hinge subcomplex-like
Superfamily:Mediator hinge subcomplex-like
Family:CSE2-like
84d1g7sa2



not modelled 23.4 16
Fold:Reductase/isomerase/elongation factor common domain
Superfamily:Translation proteins
Family:Elongation factors
85c4xd7B_



not modelled 23.4 19
PDB header:hydrolase
Chain: B: PDB Molecule:atp synthase subunit alpha;
PDBTitle: structure of thermophilic f1-atpase inhibited by epsilon subunit
86d2uubl1



not modelled 22.8 18
Fold:OB-fold
Superfamily:Nucleic acid-binding proteins
Family:Cold shock DNA-binding domain-like
87c6iiuA_



not modelled 22.5 10
PDB header:signaling protein
Chain: A: PDB Molecule:soluble cytochrome b562,thromboxane a2 receptor,rubredoxin,
PDBTitle: crystal structure of the human thromboxane a2 receptor bound to2 ramatroban
88c4xa3A_



not modelled 22.1 13
PDB header:motor protein
Chain: A: PDB Molecule:gp7-myh7(1361-1425)-eb1 chimera protein;
PDBTitle: crystal structure of the coiled-coil surrounding skip 2 of myh7
89c3htrB_



not modelled 22.0 21
PDB header:structural genomics, unknown function
Chain: B: PDB Molecule:uncharacterized prc-barrel domain protein;
PDBTitle: crystal structure of prc-barrel domain protein from2 rhodopseudomonas palustris
90c6njpC_



not modelled 21.9 30
PDB header:hydrolase
Chain: C: PDB Molecule:translocator escn;
PDBTitle: structure of the assembled atpase escn in complex with its central2 stalk esco from the enteropathogenic e. coli (epec) type iii3 secretion system
91c1bg1A_



not modelled 21.9 11
PDB header:transcription/dna
Chain: A: PDB Molecule:protein (transcription factor stat3b);
PDBTitle: transcription factor stat3b/dna complex
92c1worA_



not modelled 21.8 13
PDB header:transferase
Chain: A: PDB Molecule:aminomethyltransferase;
PDBTitle: crystal structure of t-protein of the glycine cleavage2 system
93d1v5va1



not modelled 21.7 18
Fold:Elongation factor/aminomethyltransferase common domain
Superfamily:Aminomethyltransferase beta-barrel domain
Family:Aminomethyltransferase beta-barrel domain
94c5xbjA_



not modelled 21.4 15
PDB header:biosynthetic protein
Chain: A: PDB Molecule:flagellar hook-associated protein flgk;
PDBTitle: the structure of the flagellar hook junction protein hap1 (flgk) from2 campylobacter jejuni
95c6e8wC_



not modelled 20.3 14
PDB header:viral protein
Chain: C: PDB Molecule:envelope glycoprotein gp160;
PDBTitle: mper-tm domain of hiv-1 envelope glycoprotein (env)
96c5zuvB_



not modelled 19.8 20
PDB header:viral protein, inhibitor
Chain: B: PDB Molecule:spike glycoprotein,spike glycoprotein,inhibitor ek1;
PDBTitle: crystal structure of the human coronavirus 229e hr1 motif in complex2 with pan-covs inhibitor ek1
97c6rdtY_



not modelled 19.6 26
PDB header:proton transport
Chain: Y: PDB Molecule:atp synthase subunit beta;
PDBTitle: cryo-em structure of polytomella f-atp synthase, rotary substate 1e,2 composite map
98c6gy6Q_



not modelled 19.4 12
PDB header:toxin
Chain: Q: PDB Molecule:xaxa;
PDBTitle: xaxab pore complex from xenorhabdus nematophila
99c2dpyA_



not modelled 19.4 22
PDB header:hydrolase
Chain: A: PDB Molecule:flagellum-specific atp synthase;
PDBTitle: crystal structure of the flagellar type iii atpase flii

Binding site prediction 

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Transmembrane helix prediction 

Transmembrane helices have been predicted in your sequence to adopt the topology shown below