Phyre Home Retrieve Phyre Job Id
Emailmdejesus@rockefeller.edu
DescriptionRVBD0590A_(-)_688811_689065
DateFri Jul 26 01:50:14 BST 2019
Unique Job ID613126204f6c40dd
SequenceLLHSSFGHLE ... Download FASTA
Job Typenormal
Job Expiry

Summary 

Top model
Image coloured by rainbow N → C terminus
Model dimensions (Å):X:20.577 Y:24.182 Z:16.036
Model (left) based on template c3zfnA_
Top template information
PDB header:hydrolase
Chain: A: PDB Molecule:n-terminal protease npro;
PDBTitle: crystal structure of product-like, processed n-terminal protease npro
Confidence and coverage
Confidence: 28.6% Coverage: 20%
17 residues ( 20% of your sequence) have been modelled with 28.6% confidence by the single highest scoring template.
You may wish to submit your sequence to Phyrealarm. This will automatically scan your sequence every week for new potential templates as they appear in the Phyre2 library.
Please note: You must be registered and logged in to use Phyrealarm.
3D viewing
Interactive 3D view in JSmol
For other options to view your downloaded structure offline see the FAQ

Sequence analysis 

Download FASTA version

Secondary structure and disorder prediction [Show] 

Domain analysis [Show] 

Detailed template information [Hide] 

 

#
Template Alignment Coverage3D Model Confidence
% i.d. Template Information
1c3zfnA_
28.6 41
PDB header:hydrolase
Chain: A: PDB Molecule:n-terminal protease npro;
PDBTitle: crystal structure of product-like, processed n-terminal protease npro
2c4h9kA_
27.2 41
PDB header:hydrolase
Chain: A: PDB Molecule:hog cholera virus;
PDBTitle: crystal structure of cleavage site mutant of npro of classical swine2 fever virus.
3c2akfB_
22.2 26
PDB header:protein binding
Chain: B: PDB Molecule:coronin-1a;
PDBTitle: crystal structure of the coiled-coil domain of coronin 1
4c2akfC_
20.7 25
PDB header:protein binding
Chain: C: PDB Molecule:coronin-1a;
PDBTitle: crystal structure of the coiled-coil domain of coronin 1
5c2akfA_
20.7 25
PDB header:protein binding
Chain: A: PDB Molecule:coronin-1a;
PDBTitle: crystal structure of the coiled-coil domain of coronin 1
6c6bs9A_
20.5 16
PDB header:transport protein
Chain: A: PDB Molecule:stage iii sporulation protein ab;
PDBTitle: stage iii sporulation protein ab (spoiiiab)
7c2fxpA_
16.1 15
PDB header:viral protein
Chain: A: PDB Molecule:spike glycoprotein;
PDBTitle: solution structure of the sars-coronavirus hr2 domain
8d1qqp1_
15.6 27
Fold:Nucleoplasmin-like/VP (viral coat and capsid proteins)
Superfamily:Positive stranded ssRNA viruses
Family:Picornaviridae-like VP (VP1, VP2, VP3 and VP4)
9c3h01A_
15.3 12
PDB header:viral protein
Chain: A: PDB Molecule:envelope glycoprotein gp160;
PDBTitle: structure of the c-terminal domain of a putative hiv-1 gp41 fusion2 intermediate
10c1qgc1_
14.6 27
PDB header:virus/immune system
Chain: 1: PDB Molecule:protein (virus capsid protein vp1);
PDB Fragment:residues 133-156 PDBTitle: structure of the complex of a fab fragment of a neutralizing antibody2 with foot and mouth disease virus
11d1ubea2
14.1 33
Fold:Anti-LPS factor/recA domain
Superfamily:RecA protein, C-terminal domain
Family:RecA protein, C-terminal domain
12d1xp8a2
13.8 33
Fold:Anti-LPS factor/recA domain
Superfamily:RecA protein, C-terminal domain
Family:RecA protein, C-terminal domain
13d1u94a2
13.7 17
Fold:Anti-LPS factor/recA domain
Superfamily:RecA protein, C-terminal domain
Family:RecA protein, C-terminal domain
14d1fmd1_
12.9 27
Fold:Nucleoplasmin-like/VP (viral coat and capsid proteins)
Superfamily:Positive stranded ssRNA viruses
Family:Picornaviridae-like VP (VP1, VP2, VP3 and VP4)
15d1mo6a2
12.7 33
Fold:Anti-LPS factor/recA domain
Superfamily:RecA protein, C-terminal domain
Family:RecA protein, C-terminal domain
16c6irwA_
12.2 29
PDB header:transferase
Chain: A: PDB Molecule:phosphorylated ctd-interacting factor 1;
PDBTitle: crystal structure of the human cap-specific adenosine2 methyltransferase bound to sah
17d1txna_
10.2 21
Fold:Coproporphyrinogen III oxidase
Superfamily:Coproporphyrinogen III oxidase
Family:Coproporphyrinogen III oxidase
18d1tkla_
9.4 21
Fold:Coproporphyrinogen III oxidase
Superfamily:Coproporphyrinogen III oxidase
Family:Coproporphyrinogen III oxidase
19c3vepA_
8.4 30
PDB header:membrane protein/transcription
Chain: A: PDB Molecule:probable rna polymerase sigma-d factor;
PDBTitle: crystal structure of sigd4 in complex with its negative regulator rsda
20c3k8hA_
8.4 21
PDB header:membrane protein
Chain: A: PDB Molecule:30klp;
PDBTitle: structure of crystal form i of tp0453
21c2ld3A_
not modelled 8.4 14
PDB header:motor protein
Chain: A: PDB Molecule:myosin vi;
PDBTitle: solution structure of myosin vi lever arm extension
22c2aexA_
not modelled 7.8 17
PDB header:oxidoreductase
Chain: A: PDB Molecule:coproporphyrinogen iii oxidase, mitochondrial;
PDBTitle: the 1.58a crystal structure of human coproporphyrinogen oxidase2 reveals the structural basis of hereditary coproporphyria
23c1zbe1_
not modelled 7.8 27
PDB header:virus
Chain: 1: PDB Molecule:coat protein vp1;
PDBTitle: foot-and mouth disease virus serotype a1061
24c4udeA_
not modelled 7.8 24
PDB header:transcription
Chain: A: PDB Molecule:ginlfy protein;
PDBTitle: an oligomerization domain confers pioneer properties to the2 leafy master floral regulator
25d1qtma2
not modelled 7.4 17
Fold:DNA/RNA polymerases
Superfamily:DNA/RNA polymerases
Family:DNA polymerase I
26c1bqfA_
not modelled 6.3 71
PDB header:hormone/growth factor
Chain: A: PDB Molecule:protein (growth-blocking peptide);
PDBTitle: growth-blocking peptide (gbp) from pseudaletia separata
27c4e86L_
not modelled 6.3 50
PDB header:antimicrobial protein
Chain: L: PDB Molecule:defensin-5;
PDBTitle: crystal structure of human alpha-defensin 5, hd5 (leu29aba mutant)
28c4e86H_
not modelled 6.2 50
PDB header:antimicrobial protein
Chain: H: PDB Molecule:defensin-5;
PDBTitle: crystal structure of human alpha-defensin 5, hd5 (leu29aba mutant)
29c4e86D_
not modelled 6.2 50
PDB header:antimicrobial protein
Chain: D: PDB Molecule:defensin-5;
PDBTitle: crystal structure of human alpha-defensin 5, hd5 (leu29aba mutant)
30d1vmha_
not modelled 6.2 18
Fold:YjbQ-like
Superfamily:YjbQ-like
Family:YjbQ-like
31d2cmua1
not modelled 6.2 27
Fold:Pentein, beta/alpha-propeller
Superfamily:Pentein
Family:Porphyromonas-type peptidylarginine deiminase
32d1vjua_
not modelled 6.2 24
Fold:Coproporphyrinogen III oxidase
Superfamily:Coproporphyrinogen III oxidase
Family:Coproporphyrinogen III oxidase
33d1vmja_
not modelled 6.1 9
Fold:YjbQ-like
Superfamily:YjbQ-like
Family:YjbQ-like
34c4e83B_
not modelled 6.1 50
PDB header:antimicrobial protein
Chain: B: PDB Molecule:defensin-5;
PDBTitle: crystal structure of human alpha-defensin 5, hd5 (leu29nle mutant)
35c4e86B_
not modelled 6.1 50
PDB header:antimicrobial protein
Chain: B: PDB Molecule:defensin-5;
PDBTitle: crystal structure of human alpha-defensin 5, hd5 (leu29aba mutant)
36c4e86C_
not modelled 6.1 50
PDB header:antimicrobial protein
Chain: C: PDB Molecule:defensin-5;
PDBTitle: crystal structure of human alpha-defensin 5, hd5 (leu29aba mutant)
37c4e86A_
not modelled 6.1 50
PDB header:antimicrobial protein
Chain: A: PDB Molecule:defensin-5;
PDBTitle: crystal structure of human alpha-defensin 5, hd5 (leu29aba mutant)
38c4e86E_
not modelled 6.0 50
PDB header:antimicrobial protein
Chain: E: PDB Molecule:defensin-5;
PDBTitle: crystal structure of human alpha-defensin 5, hd5 (leu29aba mutant)
39c4e86G_
not modelled 6.0 50
PDB header:antimicrobial protein
Chain: G: PDB Molecule:defensin-5;
PDBTitle: crystal structure of human alpha-defensin 5, hd5 (leu29aba mutant)
40c4e83A_
not modelled 6.0 50
PDB header:antimicrobial protein
Chain: A: PDB Molecule:defensin-5;
PDBTitle: crystal structure of human alpha-defensin 5, hd5 (leu29nle mutant)
41c4e86F_
not modelled 6.0 50
PDB header:antimicrobial protein
Chain: F: PDB Molecule:defensin-5;
PDBTitle: crystal structure of human alpha-defensin 5, hd5 (leu29aba mutant)
42c4qr1B_
not modelled 5.9 18
PDB header:hydrolase
Chain: B: PDB Molecule:crispr-associated endoribonuclease cas2;
PDBTitle: crystal structure of streptococcus pyogenes cas2 at ph 6.5
43c5mszA_
not modelled 5.9 50
PDB header:oxidoreductase
Chain: A: PDB Molecule:thermobia domestica domestica aa15;
PDBTitle: lytic polysaccharide monooxygenase aa15 from thermobia domestica in2 the cu(i) state
44d2ewoa1
not modelled 5.9 18
Fold:Pentein, beta/alpha-propeller
Superfamily:Pentein
Family:Porphyromonas-type peptidylarginine deiminase
45c5x0wH_
not modelled 5.8 30
PDB header:ligase/protein binding
Chain: H: PDB Molecule:sharpin;
PDBTitle: molecular mechanism for the binding between sharpin and hoip
46d1q44a_
not modelled 5.8 15
Fold:P-loop containing nucleoside triphosphate hydrolases
Superfamily:P-loop containing nucleoside triphosphate hydrolases
Family:PAPS sulfotransferase
47c2p6cB_
not modelled 5.7 9
PDB header:structural genomics, unknown function
Chain: B: PDB Molecule:aq_2013 protein;
PDBTitle: crystal structure of hypothetical protein aq_2013 from aquifex2 aeolicus vf5.
48c5fgmA_
not modelled 5.7 22
PDB header:hydrolase
Chain: A: PDB Molecule:ecf rna polymerase sigma factor sigr;
PDBTitle: streptomyces coelicolor sigr region 4
49c5eo6A_
not modelled 5.6 17
PDB header:oxidoreductase
Chain: A: PDB Molecule:coproporphyrinogen oxidase;
PDBTitle: coproporphyrinogen iii oxidase (hemf) from acinetobacter baumannii
50c5cuiD_
not modelled 5.6 50
PDB header:antimicrobial protein
Chain: D: PDB Molecule:defensin-5;
PDBTitle: crystal structure of human defensin-5 r28a mutant.
51c5cuiB_
not modelled 5.6 50
PDB header:antimicrobial protein
Chain: B: PDB Molecule:defensin-5;
PDBTitle: crystal structure of human defensin-5 r28a mutant.
52c5cuiE_
not modelled 5.6 50
PDB header:antimicrobial protein
Chain: E: PDB Molecule:defensin-5;
PDBTitle: crystal structure of human defensin-5 r28a mutant.
53c5cuiC_
not modelled 5.6 50
PDB header:antimicrobial protein
Chain: C: PDB Molecule:defensin-5;
PDBTitle: crystal structure of human defensin-5 r28a mutant.
54c5cuiA_
not modelled 5.6 50
PDB header:antimicrobial protein
Chain: A: PDB Molecule:defensin-5;
PDBTitle: crystal structure of human defensin-5 r28a mutant.
55c5cuiF_
not modelled 5.6 50
PDB header:antimicrobial protein
Chain: F: PDB Molecule:defensin-5;
PDBTitle: crystal structure of human defensin-5 r28a mutant.
56c2veqA_
not modelled 5.6 12
PDB header:cell cycle
Chain: A: PDB Molecule:centromere dna-binding protein complex cbf3 subunit b;
PDBTitle: insights into kinetochore-dna interactions from the structure of cep3p
57c4e82B_
not modelled 5.5 50
PDB header:antimicrobial protein
Chain: B: PDB Molecule:defensin-5;
PDBTitle: crystal structure of monomeric variant of human alpha-defensin 5, hd52 (glu21eme mutant)
58c4e82A_
not modelled 5.5 50
PDB header:antimicrobial protein
Chain: A: PDB Molecule:defensin-5;
PDBTitle: crystal structure of monomeric variant of human alpha-defensin 5, hd52 (glu21eme mutant)
59c2mitB_
not modelled 5.5 50
PDB header:antimicrobial protein
Chain: B: PDB Molecule:defensin-5;
PDBTitle: solution structure of oxidized dimeric form of human defensin 5
60d1w0ba_
not modelled 5.4 24
Fold:Spectrin repeat-like
Superfamily:Alpha-hemoglobin stabilizing protein AHSP
Family:Alpha-hemoglobin stabilizing protein AHSP
61c1zmpC_
not modelled 5.4 50
PDB header:antimicrobial protein
Chain: C: PDB Molecule:defensin 5;
PDBTitle: crystal structure of human defensin-5
62c2lxzA_
not modelled 5.4 50
PDB header:antimicrobial protein
Chain: A: PDB Molecule:defensin-5;
PDBTitle: solution structure of the antimicrobial peptide human defensin 5
63c1zmpB_
not modelled 5.4 50
PDB header:antimicrobial protein
Chain: B: PDB Molecule:defensin 5;
PDBTitle: crystal structure of human defensin-5
64c1zmpA_
not modelled 5.4 50
PDB header:antimicrobial protein
Chain: A: PDB Molecule:defensin 5;
PDBTitle: crystal structure of human defensin-5
65c3excX_
not modelled 5.4 8
PDB header:hydrolase
Chain: X: PDB Molecule:uncharacterized protein;
PDBTitle: structure of the rna'se sso8090 from sulfolobus solfataricus
66c4merD_
not modelled 5.4 20
PDB header:unknown function
Chain: D: PDB Molecule:streptococcal histidine-rich glycoprotein interacting
PDBTitle: crystal structure of the novel protein and virulence factor ship2 (q99xu0) from streptococcus pyogenes
67c2mitA_
not modelled 5.4 50
PDB header:antimicrobial protein
Chain: A: PDB Molecule:defensin-5;
PDBTitle: solution structure of oxidized dimeric form of human defensin 5
68d1z8ua1
not modelled 5.3 24
Fold:Spectrin repeat-like
Superfamily:Alpha-hemoglobin stabilizing protein AHSP
Family:Alpha-hemoglobin stabilizing protein AHSP
69d2p12a1
not modelled 5.3 14
Fold:FomD barrel-like
Superfamily:FomD-like
Family:FomD-like
70c5cujF_
not modelled 5.3 50
PDB header:antimicrobial protein
Chain: F: PDB Molecule:defensin-5;
PDBTitle: crystal structure of human defensin-5 y27a mutant crystal form 2.
71c5cumA_
not modelled 5.3 50
PDB header:antimicrobial protein
Chain: A: PDB Molecule:defensin-5;
PDBTitle: crystal structure of human defensin-5 y27a mutant crystal form 1.
72c5cujB_
not modelled 5.3 50
PDB header:antimicrobial protein
Chain: B: PDB Molecule:defensin-5;
PDBTitle: crystal structure of human defensin-5 y27a mutant crystal form 2.
73c5cujE_
not modelled 5.3 50
PDB header:antimicrobial protein
Chain: E: PDB Molecule:defensin-5;
PDBTitle: crystal structure of human defensin-5 y27a mutant crystal form 2.
74c5cumB_
not modelled 5.3 50
PDB header:antimicrobial protein
Chain: B: PDB Molecule:defensin-5;
PDBTitle: crystal structure of human defensin-5 y27a mutant crystal form 1.
75c5cujC_
not modelled 5.3 50
PDB header:antimicrobial protein
Chain: C: PDB Molecule:defensin-5;
PDBTitle: crystal structure of human defensin-5 y27a mutant crystal form 2.
76c5cumC_
not modelled 5.3 50
PDB header:antimicrobial protein
Chain: C: PDB Molecule:defensin-5;
PDBTitle: crystal structure of human defensin-5 y27a mutant crystal form 1.
77c5cujA_
not modelled 5.3 50
PDB header:antimicrobial protein
Chain: A: PDB Molecule:defensin-5;
PDBTitle: crystal structure of human defensin-5 y27a mutant crystal form 2.
78c5cujD_
not modelled 5.3 50
PDB header:antimicrobial protein
Chain: D: PDB Molecule:defensin-5;
PDBTitle: crystal structure of human defensin-5 y27a mutant crystal form 2.
79c1ve0A_
not modelled 5.3 18
PDB header:metal binding protein
Chain: A: PDB Molecule:hypothetical protein (st2072);
PDBTitle: crystal structure of uncharacterized protein st2072 from sulfolobus2 tokodaii
80c2cu5C_
not modelled 5.2 18
PDB header:structural genomics, unknown function
Chain: C: PDB Molecule:conserved hypothetical protein tt1486;
PDBTitle: crystal structure of the conserved hypothetical protein tt1486 from2 thermus thermophilus hb8
81d1p5vb_
not modelled 5.2 39
Fold:Common fold of diphtheria toxin/transcription factors/cytochrome f
Superfamily:Bacterial adhesins
Family:Pilus subunits
82c2p6hB_
not modelled 5.2 9
PDB header:structural genomics, unknown function
Chain: B: PDB Molecule:hypothetical protein;
PDBTitle: crystal structure of hypothetical protein ape1520 from aeropyrum2 pernix k1
83c4rbxA_
not modelled 5.1 50
PDB header:antimicrobial protein
Chain: A: PDB Molecule:defensin-5;
PDBTitle: crystal structure of human alpha-defensin 5, hd5 (glu21arg mutant)
84c2vziB_
not modelled 5.1 22
PDB header:cell adhesion
Chain: B: PDB Molecule:alpha-parvin;
PDBTitle: crystal structure of the c-terminal calponin homology domain of alpha-2 parvin in complex with paxillin ld4 motif
85c2o8xA_
not modelled 5.1 20
PDB header:transcription
Chain: A: PDB Molecule:probable rna polymerase sigma-c factor;
PDBTitle: crystal structure of the "-35 element" promoter recognition domain of2 mycobacterium tuberculosis sigc

Binding site prediction 

Due to computational demand, binding site predictions are not run for batch jobs

If you want to predict binding sites, please manually submit your model of choice to 3DLigandSite