Phyre Home Retrieve Phyre Job Id
Emailmdejesus@rockefeller.edu
DescriptionRVBD0595c_(-)_694842_695234
DateFri Jul 26 01:50:15 BST 2019
Unique Job IDbd915ffeedd106d2
SequenceVNVRRALADT ... Download FASTA
Job Typenormal
Job Expiry

Summary 

Top model
Image coloured by rainbow N → C terminus
Model dimensions (Å):X:44.551 Y:44.732 Z:40.153
Model (left) based on template c3dboB_
Top template information
PDB header:toxin/antitoxin
Chain: B: PDB Molecule:uncharacterized protein;
PDBTitle: crystal structure of a member of the vapbc family of toxin-antitoxin2 systems, vapbc-5, from mycobacterium tuberculosis
Confidence and coverage
Confidence: 99.9% Coverage: 93%
121 residues ( 93% of your sequence) have been modelled with 99.9% confidence by the single highest scoring template.
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Sequence analysis 

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Secondary structure and disorder prediction [Show] 

Domain analysis [Show] 

Detailed template information [Hide] 

 

#
Template Alignment Coverage3D Model Confidence
% i.d. Template Information
1c3dboB_



99.9 38
PDB header:toxin/antitoxin
Chain: B: PDB Molecule:uncharacterized protein;
PDBTitle: crystal structure of a member of the vapbc family of toxin-antitoxin2 systems, vapbc-5, from mycobacterium tuberculosis
2c3h87B_



99.9 19
PDB header:toxin/antitoxin
Chain: B: PDB Molecule:putative uncharacterized protein;
PDBTitle: rv0301 rv0300 toxin antitoxin complex from mycobacterium tuberculosis
3c3tndC_



99.9 20
PDB header:translation, toxin
Chain: C: PDB Molecule:trna(fmet)-specific endonuclease vapc;
PDBTitle: crystal structure of shigella flexneri vapbc toxin-antitoxin complex
4c3zvkC_



99.9 19
PDB header:antitoxin/toxin/dna
Chain: C: PDB Molecule:toxin of toxin-antitoxin system;
PDBTitle: crystal structure of vapbc2 from rickettsia felis bound to2 a dna fragment from their promoter
5d1v96a1



99.9 14
Fold:PIN domain-like
Superfamily:PIN domain-like
Family:PIN domain
6c6nklA_



99.9 19
PDB header:antitoxin
Chain: A: PDB Molecule:ribonuclease vapc;
PDBTitle: 2.2 a resolution structure of vapbc-1 from nontypeable haemophilus2 influenzae
7d2h1ca1



99.9 26
Fold:PIN domain-like
Superfamily:PIN domain-like
Family:PIN domain
8c5sv2A_



99.9 18
PDB header:hydrolase
Chain: A: PDB Molecule:ribonuclease vapc21;
PDBTitle: toxin vapc21 from mycobacterium tuberculosis
9c5l6mC_



99.9 21
PDB header:hydrolase
Chain: C: PDB Molecule:ribonuclease vapc;
PDBTitle: structure of caulobacter crescentus vapbc1 (vapb1deltac:vapc1 form)
10c4chgC_



99.8 24
PDB header:toxin/antitoxin
Chain: C: PDB Molecule:probable ribonuclease vapc15;
PDBTitle: crystal structure of vapbc15 complex from mycobacterium tuberculosis
11d1y82a1



99.8 15
Fold:PIN domain-like
Superfamily:PIN domain-like
Family:PIN domain
12c6a7vG_



99.8 23
PDB header:toxin/antitoxin
Chain: G: PDB Molecule:ribonuclease vapc11;
PDBTitle: crystal structure of mycobacterium tuberculosis vapbc11 toxin-2 antitoxin complex
13c4xgrG_



99.8 17
PDB header:toxin/antitoxin
Chain: G: PDB Molecule:ribonuclease vapc30;
PDBTitle: crystal structure of addiction module from mycobacterial species
14c5x3tD_



99.6 22
PDB header:antitoxin/toxin
Chain: D: PDB Molecule:ribonuclease vapc26;
PDBTitle: vapbc from mycobacterium tuberculosis
15c5wzfB_



99.6 15
PDB header:hydrolase
Chain: B: PDB Molecule:23s rrna-specific endonuclease vapc20;
PDBTitle: crystal structure of mycobacterium tuberculosis vapc20 (rv2549c),2 sarcin-ricin loop cleaving toxin
16d2fe1a1



99.6 16
Fold:PIN domain-like
Superfamily:PIN domain-like
Family:PIN domain
17c2fe1A_



99.6 16
PDB header:structural genomics, unknown function
Chain: A: PDB Molecule:conserved hypothetical protein pae0151;
PDBTitle: crystal structure of pae0151 from pyrobaculum aerophilum
18d1w8ia_



98.8 15
Fold:PIN domain-like
Superfamily:PIN domain-like
Family:PIN domain
19d1v8pa_



98.6 19
Fold:PIN domain-like
Superfamily:PIN domain-like
Family:PIN domain
20c3ix7A_



98.6 23
PDB header:structural genomics, unknown function
Chain: A: PDB Molecule:uncharacterized protein ttha0540;
PDBTitle: crystal structure of a domain of functionally unknown protein from2 thermus thermophilus hb8
21c1v8pK_



not modelled 98.6 19
PDB header:structural genomics, unknown function
Chain: K: PDB Molecule:hypothetical protein pae2754;
PDBTitle: crystal structure of pae2754 from pyrobaculum aerophilum
22d1o4wa_



not modelled 98.5 22
Fold:PIN domain-like
Superfamily:PIN domain-like
Family:PIN domain
23c3i8oA_



not modelled 98.5 18
PDB header:rna binding protein
Chain: A: PDB Molecule:kh domain-containing protein mj1533;
PDBTitle: a domain of a functionally unknown protein from methanocaldococcus2 jannaschii dsm 2661.
24c5ywwA_



not modelled 98.3 15
PDB header:hydrolase
Chain: A: PDB Molecule:nucleotide binding protein pinc;
PDBTitle: archael ruvb-like holiday junction helicase
25c5f4hF_



not modelled 98.2 15
PDB header:hydrolase
Chain: F: PDB Molecule:nucleotide binding protein pinc;
PDBTitle: archael ruvb-like holiday junction helicase
26c2lcqA_



not modelled 98.2 15
PDB header:metal binding protein
Chain: A: PDB Molecule:putative toxin vapc6;
PDBTitle: solution structure of the endonuclease nob1 from p.horikoshii
27c2hwwC_



not modelled 97.3 23
PDB header:rna binding protein
Chain: C: PDB Molecule:telomerase-binding protein est1a;
PDBTitle: structure of pin domain of human smg6
28c5jpqd_



not modelled 96.8 15
PDB header:ribosome
Chain: D: PDB Molecule:wd40 domain proteins;
PDBTitle: cryo-em structure of the 90s pre-ribosome
29c5yz4A_



not modelled 96.7 17
PDB header:hydrolase
Chain: A: PDB Molecule:rrna-processing protein fcf1;
PDBTitle: structure of the pin domain endonuclease utp24
30c4mj7B_



not modelled 93.4 16
PDB header:rna binding protein
Chain: B: PDB Molecule:rrna-processing protein utp23;
PDBTitle: crystal structure of the pin domain of saccharomyces cerevisiae utp23
31c2hwyB_



not modelled 86.8 8
PDB header:rna binding protein
Chain: B: PDB Molecule:protein smg5;
PDBTitle: structure of pin domain of human smg5.
32c6g5iy_



not modelled 79.4 18
PDB header:ribosome
Chain: Y: PDB Molecule:40s ribosomal protein s24;
PDBTitle: cryo-em structure of a late human pre-40s ribosomal subunit - state r
33c3v33A_



not modelled 72.2 20
PDB header:hydrolase
Chain: A: PDB Molecule:ribonuclease zc3h12a;
PDBTitle: crystal structure of mcpip1 conserved domain with zinc-finger motif
34c3v32B_



not modelled 71.3 19
PDB header:hydrolase
Chain: B: PDB Molecule:ribonuclease zc3h12a;
PDBTitle: crystal structure of mcpip1 n-terminal conserved domain
35d1cmwa2



not modelled 68.6 35
Fold:PIN domain-like
Superfamily:PIN domain-like
Family:5' to 3' exonuclease catalytic domain
36d1tfra2



not modelled 45.2 32
Fold:PIN domain-like
Superfamily:PIN domain-like
Family:5' to 3' exonuclease catalytic domain
37c3zddA_



not modelled 38.3 19
PDB header:hydrolase/dna
Chain: A: PDB Molecule:protein xni;
PDBTitle: structure of e. coli exoix in complex with the palindromic 5ov62 oligonucleotide and potassium
38d1xo1a2



not modelled 35.8 16
Fold:PIN domain-like
Superfamily:PIN domain-like
Family:5' to 3' exonuclease catalytic domain
39c4hecB_



not modelled 25.5 33
PDB header:unknown function
Chain: B: PDB Molecule:putative uncharacterized protein;
PDBTitle: crystal structure of a putative uncharacterized protein from2 mycobacterium tuberculosis
40c1ut8B_



not modelled 24.7 16
PDB header:hydrolase
Chain: B: PDB Molecule:exodeoxyribonuclease;
PDBTitle: divalent metal ions (zinc) bound to t5 5'-exonuclease
41c2ihnA_



not modelled 24.2 28
PDB header:hydrolase/dna
Chain: A: PDB Molecule:ribonuclease h;
PDBTitle: co-crystal of bacteriophage t4 rnase h with a fork dna2 substrate
42c1cmwA_



not modelled 22.3 35
PDB header:transferase
Chain: A: PDB Molecule:protein (dna polymerase i);
PDBTitle: crystal structure of taq dna-polymerase shows a new orientation for2 the structure-specific nuclease domain
43d1hdoa_



not modelled 18.2 13
Fold:NAD(P)-binding Rossmann-fold domains
Superfamily:NAD(P)-binding Rossmann-fold domains
Family:Tyrosine-dependent oxidoreductases
44c2izoA_



not modelled 16.8 15
PDB header:hydrolase
Chain: A: PDB Molecule:flap structure-specific endonuclease;
PDBTitle: structure of an archaeal pcna1-pcna2-fen1 complex
45d1ul1x2



not modelled 16.5 21
Fold:PIN domain-like
Superfamily:PIN domain-like
Family:5' to 3' exonuclease catalytic domain
46c2qipA_



not modelled 14.2 16
PDB header:structural genomics, unknown function
Chain: A: PDB Molecule:protein of unknown function vpa0982;
PDBTitle: crystal structure of a protein of unknown function vpa0982 from vibrio2 parahaemolyticus rimd 2210633
47c4mitG_



not modelled 13.2 20
PDB header:signaling protein
Chain: G: PDB Molecule:serine/threonine protein kinase pak, putative;
PDBTitle: crystal structure of e. histolytica racc bound to the ehpak4 pbd
48c3q8lA_



not modelled 13.2 21
PDB header:hydrolase/dna
Chain: A: PDB Molecule:flap endonuclease 1;
PDBTitle: crystal structure of human flap endonuclease fen1 (wt) in complex with2 substrate 5'-flap dna, sm3+, and k+
49d1a77a2



not modelled 12.1 18
Fold:PIN domain-like
Superfamily:PIN domain-like
Family:5' to 3' exonuclease catalytic domain
50c1b43A_



not modelled 10.7 18
PDB header:transferase
Chain: A: PDB Molecule:protein (fen-1);
PDBTitle: fen-1 from p. furiosus
51c1a77A_



not modelled 10.0 18
PDB header:5'-3' exo/endo nuclease
Chain: A: PDB Molecule:flap endonuclease-1 protein;
PDBTitle: flap endonuclease-1 from methanococcus jannaschii
52d1rxwa2



not modelled 8.5 15
Fold:PIN domain-like
Superfamily:PIN domain-like
Family:5' to 3' exonuclease catalytic domain
53c2c40B_



not modelled 8.3 0
PDB header:hydrolase
Chain: B: PDB Molecule:inosine-uridine preferring nucleoside hydrolase family
PDBTitle: crystal structure of inosine-uridine preferring nucleoside2 hydrolase from bacillus anthracis at 2.2a resolution
54c3t8iC_



not modelled 8.2 22
PDB header:hydrolase
Chain: C: PDB Molecule:purine nucleosidase, (iunh-2);
PDBTitle: structural analysis of thermostable s. solfataricus purine-specific2 nucleoside hydrolase
55c6dxpD_



not modelled 7.8 13
PDB header:oxidoreductase
Chain: D: PDB Molecule:fmn-dependent nadh-azoreductase;
PDBTitle: the crystal structure of an fmn-dependent nadh-azoreductase from2 klebsiella pneumoniae
56c3t8jA_



not modelled 7.6 22
PDB header:hydrolase
Chain: A: PDB Molecule:purine nucleosidase, (iunh-1);
PDBTitle: structural analysis of thermostable s. solfataricus pyrimidine-2 specific nucleoside hydrolase
57c5dizB_



not modelled 7.4 22
PDB header:hydrolase
Chain: B: PDB Molecule:proteinaceous rnase p 2;
PDBTitle: crystal structure of nuclear proteinaceous rnase p 2 (prorp2) from a.2 thaliana
58d1mc8a2



not modelled 7.1 21
Fold:PIN domain-like
Superfamily:PIN domain-like
Family:5' to 3' exonuclease catalytic domain
59c4mitE_



not modelled 7.1 25
PDB header:signaling protein
Chain: E: PDB Molecule:serine/threonine protein kinase pak, putative;
PDBTitle: crystal structure of e. histolytica racc bound to the ehpak4 pbd
60c4g25A_



not modelled 6.9 21
PDB header:rna binding protein
Chain: A: PDB Molecule:pentatricopeptide repeat-containing protein at2g32230,
PDBTitle: crystal structure of proteinaceous rnase p 1 (prorp1) from a.2 thaliana, semet substituted form with sr
61c1rxvA_



not modelled 6.8 15
PDB header:hydrolase/dna
Chain: A: PDB Molecule:flap structure-specific endonuclease;
PDBTitle: crystal structure of a. fulgidus fen-1 bound to dna
62c2hsnA_



not modelled 6.7 13
PDB header:ligase/rna binding protein
Chain: A: PDB Molecule:methionyl-trna synthetase, cytoplasmic;
PDBTitle: structural basis of yeast aminoacyl-trna synthetase complex2 formation revealed by crystal structures of two binary sub-3 complexes
63c6c34A_



not modelled 6.1 8
PDB header:dna binding protein
Chain: A: PDB Molecule:5'-3' exonuclease;
PDBTitle: mycobacterium smegmatis dna flap endonuclease mutant d125n
64c6ba0D_



not modelled 5.5 13
PDB header:hydrolase
Chain: D: PDB Molecule:cytidine/uridine-specific hydrolase;
PDBTitle: pyrimidine-specific ribonucleoside hydrolase from gardnerella2 vaginalis
65c1zp0D_



not modelled 5.4 14
PDB header:oxidoreductase
Chain: D: PDB Molecule:small cytochrome binding protein;
PDBTitle: crystal structure of mitochondrial respiratory complex ii2 bound with 3-nitropropionate and 2-thenoyltrifluoroacetone
66c3ofeB_



not modelled 5.2 18
PDB header:chaperone
Chain: B: PDB Molecule:ldlr chaperone boca;
PDBTitle: structured domain of drosophila melanogaster boca p41 2 2 crystal form
67c2i9sA_



not modelled 5.1 18
PDB header:chaperone
Chain: A: PDB Molecule:mesoderm development candidate 2;
PDBTitle: the solution structure of the core of mesoderm development2 (mesd).

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