Phyre Home Retrieve Phyre Job Id
Emailmdejesus@rockefeller.edu
DescriptionRVBD0596c_(-)_695231_695488
DateFri Jul 26 01:50:15 BST 2019
Unique Job IDfc659531cb6c8f6e
SequenceMSATIPARDL ... Download FASTA
Job Typenormal
Job Expiry

Summary 

Top model
Image coloured by rainbow N → C terminus
Model dimensions (Å):X:21.201 Y:27.230 Z:36.969
Model (left) based on template c2odkD_
Top template information
PDB header:structural genomics, unknown function
Chain: D: PDB Molecule:hypothetical protein;
PDBTitle: putative prevent-host-death protein from nitrosomonas europaea
Confidence and coverage
Confidence: 99.3% Coverage: 53%
45 residues ( 53% of your sequence) have been modelled with 99.3% confidence by the single highest scoring template.
Additional confident templates have been detected (see Domain analysis) which cover other regions of your sequence.
77 residues ( 91%) could be modelled at >90% confidence using multiple-templates.
You may wish to try resubmitting your sequence in "intensive" mode to model more of your sequence.
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Sequence analysis 

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Secondary structure and disorder prediction [Show] 

Domain analysis [Show] 

Detailed template information [Hide] 

 

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Template Alignment Coverage3D Model Confidence
% i.d. Template Information
1c2odkD_



99.3 20
PDB header:structural genomics, unknown function
Chain: D: PDB Molecule:hypothetical protein;
PDBTitle: putative prevent-host-death protein from nitrosomonas europaea
2d2odka1



99.3 20
Fold:YefM-like
Superfamily:YefM-like
Family:YefM-like
3c3hryA_



98.9 38
PDB header:antitoxin
Chain: A: PDB Molecule:prevent host death protein;
PDBTitle: crystal structure of phd in a trigonal space group and partially2 disordered
4c3hs2H_



98.9 38
PDB header:antitoxin
Chain: H: PDB Molecule:prevent host death protein;
PDBTitle: crystal structure of phd truncated to residue 57 in an orthorhombic2 space group
5d2a6qb1



98.5 14
Fold:YefM-like
Superfamily:YefM-like
Family:YefM-like
6c3g5oA_



98.5 19
PDB header:toxin/antitoxin
Chain: A: PDB Molecule:uncharacterized protein rv2865;
PDBTitle: the crystal structure of the toxin-antitoxin complex relbe2 (rv2865-2 2866) from mycobacterium tuberculosis
7d2a6qa1



98.2 15
Fold:YefM-like
Superfamily:YefM-like
Family:YefM-like
8c3oeiB_



98.0 18
PDB header:toxin, protein binding
Chain: B: PDB Molecule:relj (antitoxin rv3357);
PDBTitle: crystal structure of mycobacterium tuberculosis reljk (rv3357-rv3358-2 relbe3)
9c3d55A_



97.8 13
PDB header:toxin inhibitor
Chain: A: PDB Molecule:uncharacterized protein rv3357/mt3465;
PDBTitle: crystal structure of m. tuberculosis yefm antitoxin
10c3k6qB_



92.4 21
PDB header:ligand binding protein
Chain: B: PDB Molecule:putative ligand binding protein;
PDBTitle: crystal structure of an antitoxin part of a putative toxin/antitoxin2 system (swol_0700) from syntrophomonas wolfei subsp. wolfei at 1.80 a3 resolution
11c1skoA_



73.1 21
PDB header:signaling protein
Chain: A: PDB Molecule:mitogen-activated protein kinase kinase 1
PDBTitle: mp1-p14 complex
12d3cpta1



70.2 20
Fold:Profilin-like
Superfamily:Roadblock/LC7 domain
Family:Roadblock/LC7 domain
13d2ns0a1



37.0 33
Fold:DNA/RNA-binding 3-helical bundle
Superfamily:"Winged helix" DNA-binding domain
Family:RHA1 ro06458-like
14d1x6va1



16.5 19
Fold:PUA domain-like
Superfamily:PUA domain-like
Family:ATP sulfurylase N-terminal domain
15c4heoA_



14.0 35
PDB header:viral protein
Chain: A: PDB Molecule:phosphoprotein;
PDBTitle: hendra virus phosphoprotein c terminal domain
16c2wcvI_



14.0 19
PDB header:isomerase
Chain: I: PDB Molecule:l-fucose mutarotase;
PDBTitle: crystal structure of bacterial fucu
17c3vepX_



11.6 44
PDB header:membrane protein/transcription
Chain: X: PDB Molecule:uncharacterized protein rv3413c/mt3522;
PDBTitle: crystal structure of sigd4 in complex with its negative regulator rsda
18c3vepC_



11.5 44
PDB header:membrane protein/transcription
Chain: C: PDB Molecule:uncharacterized protein rv3413c/mt3522;
PDBTitle: crystal structure of sigd4 in complex with its negative regulator rsda
19d1bifa2



10.3 18
Fold:Phosphoglycerate mutase-like
Superfamily:Phosphoglycerate mutase-like
Family:6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase, phosphatase domain
20d1k6ma2



10.1 18
Fold:Phosphoglycerate mutase-like
Superfamily:Phosphoglycerate mutase-like
Family:6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase, phosphatase domain
21d1ogda_



not modelled 9.7 25
Fold:RbsD-like
Superfamily:RbsD-like
Family:RbsD-like
22d2hq7a1



not modelled 9.1 6
Fold:Split barrel-like
Superfamily:FMN-binding split barrel
Family:PNP-oxidase like
23c5xtaC_



not modelled 9.0 21
PDB header:oxidoreductase
Chain: C: PDB Molecule:virk protein;
PDBTitle: crystal structure of lpg1832, a virk family protein from legionella2 pneumophila
24c2wtoB_



not modelled 8.5 28
PDB header:metal binding protein
Chain: B: PDB Molecule:orf131 protein;
PDBTitle: crystal structure of apo-form czce from c. metallidurans ch34
25c4a34L_



not modelled 8.2 20
PDB header:isomerase
Chain: L: PDB Molecule:rbsd/fucu transport protein family protein;
PDBTitle: crystal structure of the fucose mutarotase in complex with2 l-fucose from streptococcus pneumoniae
26d1tipa_



not modelled 8.2 18
Fold:Phosphoglycerate mutase-like
Superfamily:Phosphoglycerate mutase-like
Family:6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase, phosphatase domain
27c3daiA_



not modelled 8.0 28
PDB header:signaling protein
Chain: A: PDB Molecule:atpase family aaa domain-containing protein 2;
PDBTitle: crystal structure of the bromodomain of the human atad2
28c6c5rF_



not modelled 8.0 21
PDB header:cytosolic protein
Chain: F: PDB Molecule:calcium uniporter;
PDBTitle: crystal structure of the soluble domain of the mitochondrial calcium2 uniporter
29c3p13B_



not modelled 7.9 8
PDB header:isomerase
Chain: B: PDB Molecule:d-ribose pyranase;
PDBTitle: complex structure of d-ribose pyranase sa240 with d-ribose
30d1y7ma1



not modelled 7.6 15
Fold:L,D-transpeptidase catalytic domain-like
Superfamily:L,D-transpeptidase catalytic domain-like
Family:L,D-transpeptidase catalytic domain-like
31d1y8xb1



not modelled 7.6 22
Fold:Activating enzymes of the ubiquitin-like proteins
Superfamily:Activating enzymes of the ubiquitin-like proteins
Family:Ubiquitin activating enzymes (UBA)
32d1xbra_



not modelled 7.4 36
Fold:Common fold of diphtheria toxin/transcription factors/cytochrome f
Superfamily:p53-like transcription factors
Family:T-box
33c5lddA_



not modelled 6.7 10
PDB header:protein transport
Chain: A: PDB Molecule:mon1;
PDBTitle: crystal structure of the heterodimeric gef mon1-ccz1 in complex with2 ypt7
34d1pdoa_



not modelled 6.4 10
Fold:PTS system fructose IIA component-like
Superfamily:PTS system fructose IIA component-like
Family:EIIA-man component-like
35c4a04B_



not modelled 6.3 45
PDB header:transcription
Chain: B: PDB Molecule:t-box transcription factor tbx1;
PDBTitle: structure of the dna-bound t-box domain of human tbx1, a2 transcription factor associated with the digeorge syndrome
36c1gk7A_



not modelled 6.3 18
PDB header:vimentin
Chain: A: PDB Molecule:vimentin;
PDBTitle: human vimentin coil 1a fragment (1a)
37c5ghaF_



not modelled 6.1 17
PDB header:transferase/transport protein
Chain: F: PDB Molecule:sulfur carrier ttub;
PDBTitle: sulfur transferase ttua in complex with sulfur carrier ttub
38c4x3iA_



not modelled 5.9 40
PDB header:signaling protein
Chain: A: PDB Molecule:activity-regulated cytoskeleton-associated protein;
PDBTitle: the crystal structure of arc n-lobe complexed with camk2a fragment
39c5o1uB_



not modelled 5.7 17
PDB header:hydrolase
Chain: B: PDB Molecule:phosphodiesterase;
PDBTitle: structure of wildtype t.maritima pde (tm1595) with amp and mn2+
40d1dwka2



not modelled 5.6 21
Fold:Cyanase C-terminal domain
Superfamily:Cyanase C-terminal domain
Family:Cyanase C-terminal domain
41d1v47a1



not modelled 5.4 25
Fold:PUA domain-like
Superfamily:PUA domain-like
Family:ATP sulfurylase N-terminal domain
42c2iv1J_



not modelled 5.4 21
PDB header:lyase
Chain: J: PDB Molecule:cyanate hydratase;
PDBTitle: site directed mutagenesis of key residues involved in the catalytic2 mechanism of cyanase
43c3zvkG_



not modelled 5.4 19
PDB header:antitoxin/toxin/dna
Chain: G: PDB Molecule:antitoxin of toxin-antitoxin system vapb;
PDBTitle: crystal structure of vapbc2 from rickettsia felis bound to2 a dna fragment from their promoter
44c3iprC_



not modelled 5.2 14
PDB header:transferase
Chain: C: PDB Molecule:pts system, iia component;
PDBTitle: crystal structure of the enterococcus faecalis gluconate2 specific eiia phosphotransferase system component
45d1riea_



not modelled 5.2 14
Fold:ISP domain
Superfamily:ISP domain
Family:Rieske iron-sulfur protein (ISP)
46d1h6fa_



not modelled 5.0 36
Fold:Common fold of diphtheria toxin/transcription factors/cytochrome f
Superfamily:p53-like transcription factors
Family:T-box

Binding site prediction 

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