Phyre Home Retrieve Phyre Job Id
Emailmdejesus@rockefeller.edu
DescriptionRVBD0598c_(-)_697157_697570
DateFri Jul 26 01:50:15 BST 2019
Unique Job ID50f623b69465ceca
SequenceVKPPLAVDTS ... Download FASTA
Job Typenormal
Job Expiry

Summary 

Top model
Image coloured by rainbow N → C terminus
Model dimensions (Å):X:35.425 Y:44.795 Z:43.919
Model (left) based on template c5wzfB_
Top template information
PDB header:hydrolase
Chain: B: PDB Molecule:23s rrna-specific endonuclease vapc20;
PDBTitle: crystal structure of mycobacterium tuberculosis vapc20 (rv2549c),2 sarcin-ricin loop cleaving toxin
Confidence and coverage
Confidence: 99.3% Coverage: 87%
119 residues ( 87% of your sequence) have been modelled with 99.3% confidence by the single highest scoring template.
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Sequence analysis 

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Template Alignment Coverage3D Model Confidence
% i.d. Template Information
1c5wzfB_



99.3 19
PDB header:hydrolase
Chain: B: PDB Molecule:23s rrna-specific endonuclease vapc20;
PDBTitle: crystal structure of mycobacterium tuberculosis vapc20 (rv2549c),2 sarcin-ricin loop cleaving toxin
2c5x3tD_



99.3 18
PDB header:antitoxin/toxin
Chain: D: PDB Molecule:ribonuclease vapc26;
PDBTitle: vapbc from mycobacterium tuberculosis
3c5l6mC_



99.1 22
PDB header:hydrolase
Chain: C: PDB Molecule:ribonuclease vapc;
PDBTitle: structure of caulobacter crescentus vapbc1 (vapb1deltac:vapc1 form)
4d2fe1a1



99.0 24
Fold:PIN domain-like
Superfamily:PIN domain-like
Family:PIN domain
5c2fe1A_



99.0 24
PDB header:structural genomics, unknown function
Chain: A: PDB Molecule:conserved hypothetical protein pae0151;
PDBTitle: crystal structure of pae0151 from pyrobaculum aerophilum
6d2h1ca1



99.0 22
Fold:PIN domain-like
Superfamily:PIN domain-like
Family:PIN domain
7c4xgrG_



99.0 11
PDB header:toxin/antitoxin
Chain: G: PDB Molecule:ribonuclease vapc30;
PDBTitle: crystal structure of addiction module from mycobacterial species
8c3tndC_



98.8 12
PDB header:translation, toxin
Chain: C: PDB Molecule:trna(fmet)-specific endonuclease vapc;
PDBTitle: crystal structure of shigella flexneri vapbc toxin-antitoxin complex
9c6a7vG_



98.8 21
PDB header:toxin/antitoxin
Chain: G: PDB Molecule:ribonuclease vapc11;
PDBTitle: crystal structure of mycobacterium tuberculosis vapbc11 toxin-2 antitoxin complex
10c6nklA_



98.7 13
PDB header:antitoxin
Chain: A: PDB Molecule:ribonuclease vapc;
PDBTitle: 2.2 a resolution structure of vapbc-1 from nontypeable haemophilus2 influenzae
11c3zvkC_



98.6 13
PDB header:antitoxin/toxin/dna
Chain: C: PDB Molecule:toxin of toxin-antitoxin system;
PDBTitle: crystal structure of vapbc2 from rickettsia felis bound to2 a dna fragment from their promoter
12d1v8pa_



98.5 26
Fold:PIN domain-like
Superfamily:PIN domain-like
Family:PIN domain
13d1v96a1



98.5 19
Fold:PIN domain-like
Superfamily:PIN domain-like
Family:PIN domain
14c1v8pK_



98.5 26
PDB header:structural genomics, unknown function
Chain: K: PDB Molecule:hypothetical protein pae2754;
PDBTitle: crystal structure of pae2754 from pyrobaculum aerophilum
15c5sv2A_



98.4 15
PDB header:hydrolase
Chain: A: PDB Molecule:ribonuclease vapc21;
PDBTitle: toxin vapc21 from mycobacterium tuberculosis
16c3h87B_



98.3 15
PDB header:toxin/antitoxin
Chain: B: PDB Molecule:putative uncharacterized protein;
PDBTitle: rv0301 rv0300 toxin antitoxin complex from mycobacterium tuberculosis
17c4chgC_



98.3 24
PDB header:toxin/antitoxin
Chain: C: PDB Molecule:probable ribonuclease vapc15;
PDBTitle: crystal structure of vapbc15 complex from mycobacterium tuberculosis
18d1y82a1



98.2 19
Fold:PIN domain-like
Superfamily:PIN domain-like
Family:PIN domain
19c3dboB_



97.6 23
PDB header:toxin/antitoxin
Chain: B: PDB Molecule:uncharacterized protein;
PDBTitle: crystal structure of a member of the vapbc family of toxin-antitoxin2 systems, vapbc-5, from mycobacterium tuberculosis
20d1w8ia_



97.3 19
Fold:PIN domain-like
Superfamily:PIN domain-like
Family:PIN domain
21d1vqod1



not modelled 57.3 29
Fold:RL5-like
Superfamily:RL5-like
Family:Ribosomal protein L5
22c5f4hF_



not modelled 48.8 13
PDB header:hydrolase
Chain: F: PDB Molecule:nucleotide binding protein pinc;
PDBTitle: archael ruvb-like holiday junction helicase
23c4a1cD_



not modelled 47.5 10
PDB header:ribosome
Chain: D: PDB Molecule:60s ribosomal protein l11;
PDBTitle: t.thermophila 60s ribosomal subunit in complex with2 initiation factor 6. this file contains 5s rrna,3 5.8s rrna and proteins of molecule 4.
24d1o4wa_



not modelled 45.1 19
Fold:PIN domain-like
Superfamily:PIN domain-like
Family:PIN domain
25c3zf7L_



not modelled 43.9 12
PDB header:ribosome
Chain: L: PDB Molecule:60s ribosomal protein l11, putative;
PDBTitle: high-resolution cryo-electron microscopy structure of the trypanosoma2 brucei ribosome
26c5ywwA_



not modelled 43.3 17
PDB header:hydrolase
Chain: A: PDB Molecule:nucleotide binding protein pinc;
PDBTitle: archael ruvb-like holiday junction helicase
27c3i8oA_



not modelled 39.8 22
PDB header:rna binding protein
Chain: A: PDB Molecule:kh domain-containing protein mj1533;
PDBTitle: a domain of a functionally unknown protein from methanocaldococcus2 jannaschii dsm 2661.
28d1cjwa_



not modelled 34.2 11
Fold:Acyl-CoA N-acyltransferases (Nat)
Superfamily:Acyl-CoA N-acyltransferases (Nat)
Family:N-acetyl transferase, NAT
29d2p10a1



not modelled 27.3 20
Fold:TIM beta/alpha-barrel
Superfamily:Phosphoenolpyruvate/pyruvate domain
Family:Mll9387-like
30c2moiA_



not modelled 26.9 21
PDB header:membrane protein
Chain: A: PDB Molecule:inner membrane protein ygap;
PDBTitle: 3d nmr structure of the cytoplasmic rhodanese domain of the inner2 membrane protein ygap from escherichia coli
31c3j21E_



not modelled 26.7 19
PDB header:ribosome
Chain: E: PDB Molecule:50s ribosomal protein l5p;
PDBTitle: promiscuous behavior of proteins in archaeal ribosomes revealed by2 cryo-em: implications for evolution of eukaryotic ribosomes (50s3 ribosomal proteins)
32c3ix7A_



not modelled 24.5 24
PDB header:structural genomics, unknown function
Chain: A: PDB Molecule:uncharacterized protein ttha0540;
PDBTitle: crystal structure of a domain of functionally unknown protein from2 thermus thermophilus hb8
33c2p10D_



not modelled 23.4 20
PDB header:hydrolase
Chain: D: PDB Molecule:mll9387 protein;
PDBTitle: crystal structure of a putative phosphonopyruvate hydrolase (mll9387)2 from mesorhizobium loti maff303099 at 2.15 a resolution
34c1s1iJ_



not modelled 19.9 5
PDB header:ribosome
Chain: J: PDB Molecule:60s ribosomal protein l11;
PDBTitle: structure of the ribosomal 80s-eef2-sordarin complex from yeast2 obtained by docking atomic models for rna and protein components into3 a 11.7 a cryo-em map. this file, 1s1i, contains 60s subunit. the 40s4 ribosomal subunit is in file 1s1h.
35d1gmxa_



not modelled 19.7 20
Fold:Rhodanese/Cell cycle control phosphatase
Superfamily:Rhodanese/Cell cycle control phosphatase
Family:Single-domain sulfurtransferase
36c2hhgA_



not modelled 19.1 17
PDB header:structural genomics, unknown function
Chain: A: PDB Molecule:hypothetical protein rpa3614;
PDBTitle: structure of protein of unknown function rpa3614, possible tyrosine2 phosphatase, from rhodopseudomonas palustris cga009
37c6mxvA_



not modelled 16.7 15
PDB header:unknown function
Chain: A: PDB Molecule:rhodanese-like family protein;
PDBTitle: the crystal structure of a rhodanese-like family protein from2 francisella tularensis subsp. tularensis schu s4
38c5aj3d_



not modelled 16.5 17
PDB header:ribosome
Chain: D: PDB Molecule:
PDBTitle: structure of the small subunit of the mammalian mitoribosome
39c3ltiA_



not modelled 15.6 28
PDB header:transferase
Chain: A: PDB Molecule:dna-directed rna polymerase subunit beta;
PDBTitle: crystal structure of the escherichia coli rna polymerase beta subunit2 beta2-betai4 domains
40c6bevB_



not modelled 15.4 19
PDB header:transferase
Chain: B: PDB Molecule:thiosulfate sulfurtransferase/rhodanese-like domain-
PDBTitle: human single domain sulfurtranferase tstd1
41c4jgiB_



not modelled 14.7 14
PDB header:protein binding
Chain: B: PDB Molecule:putative uncharacterized protein;
PDBTitle: 1.5 angstrom crystal structure of a novel cobalamin-binding protein2 from desulfitobacterium hafniense dcb-2
42d16vpa_



not modelled 14.5 30
Fold:Conserved core of transcriptional regulatory protein vp16
Superfamily:Conserved core of transcriptional regulatory protein vp16
Family:Conserved core of transcriptional regulatory protein vp16
43c3niwA_



not modelled 14.0 15
PDB header:structural genomics, unknown function
Chain: A: PDB Molecule:haloacid dehalogenase-like hydrolase;
PDBTitle: crystal structure of a haloacid dehalogenase-like hydrolase from2 bacteroides thetaiotaomicron
44c3nhvE_



not modelled 13.7 8
PDB header:structural genomics, unknown function
Chain: E: PDB Molecule:bh2092 protein;
PDBTitle: crystal structure of bh2092 protein from bacillus halodurans,2 northeast structural genomics consortium target bhr228f
45c4ag9B_



not modelled 13.5 18
PDB header:transferase
Chain: B: PDB Molecule:glucosamine-6-phosphate n-acetyltransferase;
PDBTitle: c. elegans glucosamine-6-phosphate n-acetyltransferase (gna1):2 ternary complex with coenzyme a and glcnac
46c2axqA_



not modelled 12.2 17
PDB header:oxidoreductase
Chain: A: PDB Molecule:saccharopine dehydrogenase;
PDBTitle: apo histidine-tagged saccharopine dehydrogenase (l-glu2 forming) from saccharomyces cerevisiae
47d1m4ia_



not modelled 11.3 23
Fold:Acyl-CoA N-acyltransferases (Nat)
Superfamily:Acyl-CoA N-acyltransferases (Nat)
Family:N-acetyl transferase, NAT
48d1yt8a4



not modelled 11.3 25
Fold:Rhodanese/Cell cycle control phosphatase
Superfamily:Rhodanese/Cell cycle control phosphatase
Family:Multidomain sulfurtransferase (rhodanese)
49d2apob1



not modelled 11.0 23
Fold:Rubredoxin-like
Superfamily:Nop10-like SnoRNP
Family:Nucleolar RNA-binding protein Nop10-like
50c5craB_



not modelled 10.6 16
PDB header:hydrolase
Chain: B: PDB Molecule:sdea;
PDBTitle: structure of the sdea dub domain
51d2ga9d1



not modelled 10.4 36
Fold:Poly(A) polymerase catalytic subunit-like
Superfamily:Poly(A) polymerase catalytic subunit-like
Family:Poxvirus poly(A) polymerase catalytic subunit-like
52d1tq1a_



not modelled 10.1 30
Fold:Rhodanese/Cell cycle control phosphatase
Superfamily:Rhodanese/Cell cycle control phosphatase
Family:Single-domain sulfurtransferase
53d1vh4a_



not modelled 9.7 23
Fold:Single-stranded right-handed beta-helix
Superfamily:Stabilizer of iron transporter SufD
Family:Stabilizer of iron transporter SufD
54c3d1pA_



not modelled 9.6 20
PDB header:transferase
Chain: A: PDB Molecule:putative thiosulfate sulfurtransferase yor285w;
PDBTitle: atomic resolution structure of uncharacterized protein from2 saccharomyces cerevisiae
55c1e8zA_



not modelled 9.3 25
PDB header:transferase
Chain: A: PDB Molecule:phosphatidylinositol 3-kinase catalytic subunit;
PDBTitle: structure determinants of phosphoinositide 3-kinase2 inhibition by wortmannin, ly294002, quercetin, myricetin3 and staurosporine
56d1zcza2



not modelled 9.3 23
Fold:Cytidine deaminase-like
Superfamily:Cytidine deaminase-like
Family:AICAR transformylase domain of bifunctional purine biosynthesis enzyme ATIC
57c2hwyB_



not modelled 9.0 36
PDB header:rna binding protein
Chain: B: PDB Molecule:protein smg5;
PDBTitle: structure of pin domain of human smg5.
58d1xrsb1



not modelled 9.0 24
Fold:Flavodoxin-like
Superfamily:Cobalamin (vitamin B12)-binding domain
Family:Cobalamin (vitamin B12)-binding domain
59c3s6fA_



not modelled 8.9 15
PDB header:transferase
Chain: A: PDB Molecule:hypothetical acetyltransferase;
PDBTitle: crystal structure of a putative acetyltransferase (dr_1678) from2 deinococcus radiodurans r1 at 1.19 a resolution
60d2hqya1



not modelled 8.9 15
Fold:Acyl-CoA N-acyltransferases (Nat)
Superfamily:Acyl-CoA N-acyltransferases (Nat)
Family:FemXAB nonribosomal peptidyltransferases
61d2aq0a1



not modelled 8.8 15
Fold:SAM domain-like
Superfamily:RuvA domain 2-like
Family:Hef domain-like
62d1e7ua1



not modelled 8.7 22
Fold:alpha-alpha superhelix
Superfamily:ARM repeat
Family:Phoshoinositide 3-kinase (PI3K) helical domain
63c2lmaA_



not modelled 8.7 33
PDB header:immune system
Chain: A: PDB Molecule:thp5 peptide;
PDBTitle: solution structure of cd4+ t cell derived peptide thp5
64d1yt8a1



not modelled 8.7 25
Fold:Rhodanese/Cell cycle control phosphatase
Superfamily:Rhodanese/Cell cycle control phosphatase
Family:Multidomain sulfurtransferase (rhodanese)
65c2fsxA_



not modelled 8.4 22
PDB header:structural genomics, unknown function
Chain: A: PDB Molecule:cog0607: rhodanese-related sulfurtransferase;
PDBTitle: crystal structure of rv0390 from m. tuberculosis
66d1g8ma2



not modelled 7.8 26
Fold:Cytidine deaminase-like
Superfamily:Cytidine deaminase-like
Family:AICAR transformylase domain of bifunctional purine biosynthesis enzyme ATIC
67d2ey4e1



not modelled 7.6 31
Fold:Rubredoxin-like
Superfamily:Nop10-like SnoRNP
Family:Nucleolar RNA-binding protein Nop10-like
68d1nvma1



not modelled 7.5 24
Fold:RuvA C-terminal domain-like
Superfamily:post-HMGL domain-like
Family:DmpG/LeuA communication domain-like
69c2ze3A_



not modelled 7.4 10
PDB header:isomerase
Chain: A: PDB Molecule:dfa0005;
PDBTitle: crystal structure of dfa0005 complexed with alpha-ketoglutarate: a2 novel member of the icl/pepm superfamily from alkali-tolerant3 deinococcus ficus
70d1wu7a2



not modelled 7.4 50
Fold:Class II aaRS and biotin synthetases
Superfamily:Class II aaRS and biotin synthetases
Family:Class II aminoacyl-tRNA synthetase (aaRS)-like, catalytic domain
71d1pkxa2



not modelled 7.2 30
Fold:Cytidine deaminase-like
Superfamily:Cytidine deaminase-like
Family:AICAR transformylase domain of bifunctional purine biosynthesis enzyme ATIC
72c1wv9B_



not modelled 7.0 27
PDB header:structural genomics, unknown function
Chain: B: PDB Molecule:rhodanese homolog tt1651;
PDBTitle: crystal structure of rhodanese homolog tt1651 from an2 extremely thermophilic bacterium thermus thermophilus hb8
73c3e5bB_



not modelled 6.8 11
PDB header:lyase
Chain: B: PDB Molecule:isocitrate lyase;
PDBTitle: 2.4 a crystal structure of isocitrate lyase from brucella melitensis
74c5tv6A_



not modelled 6.7 12
PDB header:ligase
Chain: A: PDB Molecule:6-carboxyhexanoate--coa ligase;
PDBTitle: a. aeolicus biow with pimelate
75d2f6mb1



not modelled 6.5 22
Fold:Long alpha-hairpin
Superfamily:Endosomal sorting complex assembly domain
Family:VPS28 N-terminal domain
76c2qecA_



not modelled 6.4 29
PDB header:transferase
Chain: A: PDB Molecule:histone acetyltransferase hpa2 and related
PDBTitle: crystal structure of histone acetyltransferase hpa2 and related2 acetyltransferase (np_600742.1) from corynebacterium glutamicum atcc3 13032 at 1.90 a resolution
77c3i2vA_



not modelled 6.2 27
PDB header:transferase
Chain: A: PDB Molecule:adenylyltransferase and sulfurtransferase mocs3;
PDBTitle: crystal structure of human mocs3 rhodanese-like domain
78c2jy0A_



not modelled 6.1 58
PDB header:membrane protein, viral protein
Chain: A: PDB Molecule:protease ns2-3;
PDBTitle: solution nmr structure of hcv ns2 protein, membrane segment2 (1-27)
79c5b42A_



not modelled 6.1 10
PDB header:dna binding protein
Chain: A: PDB Molecule:dna mismatch repair protein mutl;
PDBTitle: crystal structure of the c-terminal endonuclease domain of aquifex2 aeolicus mutl.
80d2g3aa1



not modelled 6.0 20
Fold:Acyl-CoA N-acyltransferases (Nat)
Superfamily:Acyl-CoA N-acyltransferases (Nat)
Family:N-acetyl transferase, NAT
81c2pbxB_



not modelled 5.6 16
PDB header:transcription
Chain: B: PDB Molecule:hemagglutinin/protease regulatory protein;
PDBTitle: vibrio cholerae hapr
82c2hwwC_



not modelled 5.4 33
PDB header:rna binding protein
Chain: C: PDB Molecule:telomerase-binding protein est1a;
PDBTitle: structure of pin domain of human smg6
83d2aqaa1



not modelled 5.3 31
Fold:Rubredoxin-like
Superfamily:Nop10-like SnoRNP
Family:Nucleolar RNA-binding protein Nop10-like
84c4uhpA_



not modelled 5.3 67
PDB header:hydrolase
Chain: A: PDB Molecule:large component of pyocin ap41;
PDBTitle: crystal structure of the pyocin ap41 dnase-immunity complex
85c2qyhD_



not modelled 5.2 23
PDB header:structural genomics, unknown function
Chain: D: PDB Molecule:hypothetical conserved protein, gk1056;
PDBTitle: crystal structure of the hypothetical protein (gk1056) from2 geobacillus kaustophilus hta426
86c6ahrL_



not modelled 5.2 60
PDB header:hydrolase/rna
Chain: L: PDB Molecule:ribonuclease p protein subunit p40;
PDBTitle: cryo-em structure of human ribonuclease p
87c2cazB_



not modelled 5.2 22
PDB header:protein transport
Chain: B: PDB Molecule:vacuolar protein sorting-associated protein vps28;
PDBTitle: escrt-i core
88d2cazb1



not modelled 5.2 22
Fold:Long alpha-hairpin
Superfamily:Endosomal sorting complex assembly domain
Family:VPS28 N-terminal domain
89c3s9vD_



not modelled 5.2 14
PDB header:lyase, isomerase
Chain: D: PDB Molecule:abietadiene synthase, chloroplastic;
PDBTitle: abietadiene synthase from abies grandis
90c5z6nA_



not modelled 5.1 11
PDB header:transferase
Chain: A: PDB Molecule:protein elaa;
PDBTitle: crystal structure of escherichia coli elaa
91c1thzA_



not modelled 5.0 26
PDB header:transferase, hydrolase
Chain: A: PDB Molecule:bifunctional purine biosynthesis protein purh;
PDBTitle: crystal structure of avian aicar transformylase in complex2 with a novel inhibitor identified by virtual ligand3 screening

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