Phyre Home Retrieve Phyre Job Id
Emailmdejesus@rockefeller.edu
DescriptionRVBD0599c_(-)_697567_697803
DateFri Jul 26 01:50:15 BST 2019
Unique Job ID91259dbdeb09fd23
SequenceMKAVVDAAGR ... Download FASTA
Job Typenormal
Job Expiry

Summary 

Top model
Image coloured by rainbow N → C terminus
Model dimensions (Å):X:26.977 Y:27.003 Z:45.185
Model (left) based on template c2w1tB_
Top template information
PDB header:transcription
Chain: B: PDB Molecule:stage v sporulation protein t;
PDBTitle: crystal structure of b. subtilis spovt
Confidence and coverage
Confidence: 98.7% Coverage: 67%
52 residues ( 67% of your sequence) have been modelled with 98.7% confidence by the single highest scoring template.
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Sequence analysis 

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Domain analysis [Show] 

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#
Template Alignment Coverage3D Model Confidence
% i.d. Template Information
1c2w1tB_



98.7 25
PDB header:transcription
Chain: B: PDB Molecule:stage v sporulation protein t;
PDBTitle: crystal structure of b. subtilis spovt
2c2l66B_



98.3 13
PDB header:transcription regulator
Chain: B: PDB Molecule:transcriptional regulator, abrb family;
PDBTitle: the dna-recognition fold of sso7c4 suggests a new member of spovt-abrb2 superfamily from archaea.
3d1yfba1



98.2 33
Fold:Double-split beta-barrel
Superfamily:AbrB/MazE/MraZ-like
Family:AbrB N-terminal domain-like
4d2fy9a1



98.2 36
Fold:Double-split beta-barrel
Superfamily:AbrB/MazE/MraZ-like
Family:AbrB N-terminal domain-like
5c2mrnB_



98.0 24
PDB header:dna binding protein
Chain: B: PDB Molecule:antitoxin maze;
PDBTitle: structure of truncated ecmaze
6c2ro5B_



97.9 28
PDB header:transcription
Chain: B: PDB Molecule:stage v sporulation protein t;
PDBTitle: rdc-refined solution structure of the n-terminal dna recognition2 domain of the bacillus subtilis transition-state regulator spovt
7d1ub4c_



97.6 23
Fold:Double-split beta-barrel
Superfamily:AbrB/MazE/MraZ-like
Family:Kis/PemI addiction antidote
8c2glwA_



97.6 36
PDB header:transcription
Chain: A: PDB Molecule:92aa long hypothetical protein;
PDBTitle: the solution structure of phs018 from pyrococcus horikoshii
9d1mvfd_



97.2 27
Fold:Double-split beta-barrel
Superfamily:AbrB/MazE/MraZ-like
Family:Kis/PemI addiction antidote
10c1n0fF_



94.5 23
PDB header:biosynthetic protein
Chain: F: PDB Molecule:protein mraz;
PDBTitle: crystal structure of a cell division and cell wall2 biosynthesis protein upf0040 from mycoplasma pneumoniae:3 indication of a novel fold with a possible new conserved4 sequence motif
11d1n0ea_



93.8 23
Fold:Double-split beta-barrel
Superfamily:AbrB/MazE/MraZ-like
Family:Hypothetical protein MraZ
12c3o27B_



91.8 29
PDB header:dna binding protein
Chain: B: PDB Molecule:putative uncharacterized protein;
PDBTitle: the crystal structure of c68 from the hybrid virus-plasmid pssvx
13d2vbua1



89.6 36
Fold:Reductase/isomerase/elongation factor common domain
Superfamily:Riboflavin kinase-like
Family:CTP-dependent riboflavin kinase-like
14c3zvkG_



84.5 26
PDB header:antitoxin/toxin/dna
Chain: G: PDB Molecule:antitoxin of toxin-antitoxin system vapb;
PDBTitle: crystal structure of vapbc2 from rickettsia felis bound to2 a dna fragment from their promoter
15c5l6lD_



78.5 23
PDB header:hydrolase
Chain: D: PDB Molecule:vapb family protein;
PDBTitle: structure of caulobacter crescentus vapbc1 bound to operator dna
16c2c45F_



78.0 23
PDB header:lyase
Chain: F: PDB Molecule:aspartate 1-decarboxylase;
PDBTitle: native precursor of pyruvoyl dependent aspartate decarboxylase
17d2d9ra1



76.3 29
Fold:Double-split beta-barrel
Superfamily:AF2212/PG0164-like
Family:PG0164-like
18c5udfB_



76.0 19
PDB header:protein transport
Chain: B: PDB Molecule:lipoprotein-releasing system transmembrane protein lole;
PDBTitle: structure of the n-terminal domain of lipoprotein-releasing system2 transmembrane protein lole from acinetobacter baumannii
19c1pt1B_



73.8 18
PDB header:lyase
Chain: B: PDB Molecule:aspartate 1-decarboxylase;
PDBTitle: unprocessed pyruvoyl dependent aspartate decarboxylase with histidine2 11 mutated to alanine
20d1cz5a1



70.7 28
Fold:Double psi beta-barrel
Superfamily:ADC-like
Family:Cdc48 N-terminal domain-like
21c1zc1A_



not modelled 70.5 44
PDB header:protein turnover
Chain: A: PDB Molecule:ubiquitin fusion degradation protein 1;
PDBTitle: ufd1 exhibits the aaa-atpase fold with two distinct2 ubiquitin interaction sites
22c1cz5A_



not modelled 70.5 28
PDB header:hydrolase
Chain: A: PDB Molecule:vcp-like atpase;
PDBTitle: nmr structure of vat-n: the n-terminal domain of vat (vcp-2 like atpase of thermoplasma)
23c2pjhB_



not modelled 70.3 18
PDB header:transport protein
Chain: B: PDB Molecule:transitional endoplasmic reticulum atpase;
PDBTitle: strctural model of the p97 n domain- npl4 ubd complex
24d1ylea1



not modelled 68.9 19
Fold:Acyl-CoA N-acyltransferases (Nat)
Superfamily:Acyl-CoA N-acyltransferases (Nat)
Family:AstA-like
25d1ppya_



not modelled 67.5 15
Fold:Double psi beta-barrel
Superfamily:ADC-like
Family:Pyruvoyl dependent aspartate decarboxylase, ADC
26c6nklD_



not modelled 64.3 31
PDB header:antitoxin
Chain: D: PDB Molecule:antitoxin vapb1;
PDBTitle: 2.2 a resolution structure of vapbc-1 from nontypeable haemophilus2 influenzae
27c2yujA_



not modelled 56.1 19
PDB header:protein binding
Chain: A: PDB Molecule:ubiquitin fusion degradation 1-like;
PDBTitle: solution structure of human ubiquitin fusion degradation2 protein 1 homolog ufd1
28c5l6mA_



not modelled 51.8 18
PDB header:hydrolase
Chain: A: PDB Molecule:vapb family protein;
PDBTitle: structure of caulobacter crescentus vapbc1 (vapb1deltac:vapc1 form)
29c1uheA_



not modelled 51.3 26
PDB header:lyase
Chain: A: PDB Molecule:aspartate 1-decarboxylase alpha chain;
PDBTitle: crystal structure of aspartate decarboxylase, isoaspargine complex
30c3ougA_



not modelled 50.4 15
PDB header:lyase
Chain: A: PDB Molecule:aspartate 1-decarboxylase;
PDBTitle: crystal structure of cleaved l-aspartate-alpha-decarboxylase from2 francisella tularensis
31d2jioa1



not modelled 47.8 13
Fold:Double psi beta-barrel
Superfamily:ADC-like
Family:Formate dehydrogenase/DMSO reductase, C-terminal domain
32c3plxB_



not modelled 45.9 19
PDB header:lyase
Chain: B: PDB Molecule:aspartate 1-decarboxylase;
PDBTitle: the crystal structure of aspartate alpha-decarboxylase from2 campylobacter jejuni subsp. jejuni nctc 11168
33c1vc3B_



not modelled 45.7 25
PDB header:lyase
Chain: B: PDB Molecule:l-aspartate-alpha-decarboxylase heavy chain;
PDBTitle: crystal structure of l-aspartate-alpha-decarboxylase
34c2oqkA_



not modelled 44.8 19
PDB header:translation
Chain: A: PDB Molecule:putative translation initiation factor eif-1a;
PDBTitle: crystal structure of putative cryptosporidium parvum translation2 initiation factor eif-1a
35d1g8ka1



not modelled 44.6 16
Fold:Double psi beta-barrel
Superfamily:ADC-like
Family:Formate dehydrogenase/DMSO reductase, C-terminal domain
36c2kl0A_



not modelled 44.2 30
PDB header:structural genomics, unknown function
Chain: A: PDB Molecule:putative thiamin biosynthesis this;
PDBTitle: solution nmr structure of rhodopseudomonas palustris rpa3574,2 northeast structural genomics consortium (nesg) target rpr325
37c5naaB_



not modelled 43.9 16
PDB header:protein transport
Chain: B: PDB Molecule:lipoprotein-releasing system transmembrane protein lolc;
PDBTitle: lipoprotein-releasing system transmembrane protein lolc
38c1h9mB_



not modelled 41.1 28
PDB header:binding protein
Chain: B: PDB Molecule:molybdenum-binding-protein;
PDBTitle: two crystal structures of the cytoplasmic molybdate-binding protein2 modg suggest a novel cooperative binding mechanism and provide3 insights into ligand-binding specificity. peg-grown form with4 molybdate bound
39c4trtB_



not modelled 41.0 25
PDB header:transferase
Chain: B: PDB Molecule:dna polymerase iii subunit beta;
PDBTitle: deinococcus radiodurans dna polymerase iii subunit beta
40c2k4vA_



not modelled 40.6 33
PDB header:structural genomics, unknown function
Chain: A: PDB Molecule:uncharacterized protein pa1076;
PDBTitle: solution structure of uncharacterized protein pa1076 from pseudomonas2 aeruginosa. northeast structural genomics consortium (nesg) target3 pat3, ontario center for structural proteomics target pa1076 .
41c1zeqX_



not modelled 40.4 20
PDB header:metal binding protein
Chain: X: PDB Molecule:cation efflux system protein cusf;
PDBTitle: 1.5 a structure of apo-cusf residues 6-88 from escherichia2 coli
42d1vpka1



not modelled 39.9 22
Fold:DNA clamp
Superfamily:DNA clamp
Family:DNA polymerase III, beta subunit
43d2iv2x1



not modelled 37.9 10
Fold:Double psi beta-barrel
Superfamily:ADC-like
Family:Formate dehydrogenase/DMSO reductase, C-terminal domain
44c4zsiA_



not modelled 37.2 18
PDB header:transcription
Chain: A: PDB Molecule:hth-type transcriptional repressor dasr;
PDBTitle: crystal structure of the effector-binding domain of dasr (dasr-ebd) in2 complex with glucosamine-6-phosphate
45c3tndF_



not modelled 36.6 32
PDB header:translation, toxin
Chain: F: PDB Molecule:antitoxin vapb;
PDBTitle: crystal structure of shigella flexneri vapbc toxin-antitoxin complex
46c3wwvA_



not modelled 35.6 17
PDB header:unknown function
Chain: A: PDB Molecule:stomatin operon partner protein;
PDBTitle: c-terminal domain of stomatin operon partner protein 1510-c from2 pyrococcus horikoshii
47d1ogya1



not modelled 34.9 16
Fold:Double psi beta-barrel
Superfamily:ADC-like
Family:Formate dehydrogenase/DMSO reductase, C-terminal domain
48d1h0ha1



not modelled 34.8 16
Fold:Double psi beta-barrel
Superfamily:ADC-like
Family:Formate dehydrogenase/DMSO reductase, C-terminal domain
49c4bpp0_



not modelled 34.7 8
PDB header:ribosome
Chain: 0: PDB Molecule:translation initiation factor eif-1a family protein;
PDBTitle: the crystal structure of the eukaryotic 40s ribosomal subunit in2 complex with eif1 and eif1a - complex 4
50d2eifa2



not modelled 34.0 27
Fold:OB-fold
Superfamily:Nucleic acid-binding proteins
Family:Cold shock DNA-binding domain-like
51d1kqfa1



not modelled 32.7 18
Fold:Double psi beta-barrel
Superfamily:ADC-like
Family:Formate dehydrogenase/DMSO reductase, C-terminal domain
52d1zq1a1



not modelled 31.6 15
Fold:Sm-like fold
Superfamily:GatD N-terminal domain-like
Family:GatD N-terminal domain-like
53d1h9ma2



not modelled 31.3 28
Fold:OB-fold
Superfamily:MOP-like
Family:BiMOP, duplicated molybdate-binding domain
54c1uebB_



not modelled 31.0 15
PDB header:rna binding protein
Chain: B: PDB Molecule:elongation factor p;
PDBTitle: crystal structure of translation elongation factor p from2 thermus thermophilus hb8
55c3m7aA_



not modelled 30.8 33
PDB header:structural genomics, unknown function
Chain: A: PDB Molecule:uncharacterized protein;
PDBTitle: crystal structure of saro_0823 (yp_496102.1) a protein of unknown2 function from novosphingobium aromaticivorans dsm 12444 at 1.22 a3 resolution
56d2fa1a1



not modelled 30.5 18
Fold:Chorismate lyase-like
Superfamily:Chorismate lyase-like
Family:UTRA domain
57d1h9ma1



not modelled 30.4 19
Fold:OB-fold
Superfamily:MOP-like
Family:BiMOP, duplicated molybdate-binding domain
58d2ra5a1



not modelled 30.4 18
Fold:Chorismate lyase-like
Superfamily:Chorismate lyase-like
Family:UTRA domain
59c2ra5A_



not modelled 30.4 18
PDB header:transcription
Chain: A: PDB Molecule:putative transcriptional regulator;
PDBTitle: crystal structure of the putative transcriptional regulator2 from streptomyces coelicolor
60c3pjyB_



not modelled 30.3 24
PDB header:transcription regulator
Chain: B: PDB Molecule:hypothetical signal peptide protein;
PDBTitle: crystal structure of a putative transcription regulator (r01717) from2 sinorhizobium meliloti 1021 at 1.55 a resolution
61c4cjdA_



not modelled 29.4 18
PDB header:cell adhesion
Chain: A: PDB Molecule:nada;
PDBTitle: crystal structure of neisseria meningitidis trimeric2 autotransporter and vaccine antigen nada
62c5t5iL_



not modelled 29.4 16
PDB header:oxidoreductase
Chain: L: PDB Molecule:tungsten formylmethanofuran dehydrogenase subunit fwdd;
PDBTitle: tungsten-containing formylmethanofuran dehydrogenase from2 methanothermobacter wolfeii, orthorhombic form at 1.9 a
63d1fr3a_



not modelled 29.3 23
Fold:OB-fold
Superfamily:MOP-like
Family:Molybdate/tungstate binding protein MOP
64d1vlfm1



not modelled 28.4 19
Fold:Double psi beta-barrel
Superfamily:ADC-like
Family:Formate dehydrogenase/DMSO reductase, C-terminal domain
65d3d31a1



not modelled 28.4 15
Fold:OB-fold
Superfamily:MOP-like
Family:ABC-transporter additional domain
66c6c00A_



not modelled 28.3 14
PDB header:translation
Chain: A: PDB Molecule:translation initiation factor if-1;
PDBTitle: solution structure of translation initiation factor 1 from clostridium2 difficile
67d1eu1a1



not modelled 28.3 10
Fold:Double psi beta-barrel
Superfamily:ADC-like
Family:Formate dehydrogenase/DMSO reductase, C-terminal domain
68c2ki8A_



not modelled 28.2 23
PDB header:oxidoreductase
Chain: A: PDB Molecule:tungsten formylmethanofuran dehydrogenase,
PDBTitle: solution nmr structure of tungsten formylmethanofuran2 dehydrogenase subunit d from archaeoglobus fulgidus,3 northeast structural genomics consortium target att7
69c1qw1A_



not modelled 27.1 20
PDB header:gene regulation
Chain: A: PDB Molecule:diphtheria toxin repressor;
PDBTitle: solution structure of the c-terminal domain of dtxr2 residues 110-226
70d2exda1



not modelled 26.9 23
Fold:OB-fold
Superfamily:NfeD domain-like
Family:NfeD domain-like
71c4ql5A_



not modelled 26.4 14
PDB header:translation
Chain: A: PDB Molecule:translation initiation factor if-1;
PDBTitle: crystal structure of translation initiation factor if-1 from2 streptococcus pneumoniae tigr4
72c5lxyH_



not modelled 26.3 38
PDB header:rna binding protein
Chain: H: PDB Molecule:zinc finger cchc domain-containing protein 8;
PDBTitle: structure of the minimal rbm7 - zcchc8 complex
73c3ll7A_



not modelled 26.0 18
PDB header:transferase
Chain: A: PDB Molecule:putative methyltransferase;
PDBTitle: crystal structure of putative methyltransferase pg_1098 from2 porphyromonas gingivalis w83
74d1hr0w_



not modelled 25.8 17
Fold:OB-fold
Superfamily:Nucleic acid-binding proteins
Family:Cold shock DNA-binding domain-like
75c2k5hA_



not modelled 25.7 20
PDB header:structural genomics, unknown function
Chain: A: PDB Molecule:conserved protein;
PDBTitle: solution nmr structure of protein encoded by mth693 from2 methanobacterium thermoautotrophicum: northeast structural3 genomics consortium target tt824a
76d1tmoa1



not modelled 25.6 16
Fold:Double psi beta-barrel
Superfamily:ADC-like
Family:Formate dehydrogenase/DMSO reductase, C-terminal domain
77c5ccbA_



not modelled 25.6 30
PDB header:transferase/rna
Chain: A: PDB Molecule:trna (adenine(58)-n(1))-methyltransferase catalytic subunit
PDBTitle: crystal structure of human m1a58 methyltransferase in a complex with2 trna3lys and sah
78d3cnva1



not modelled 25.3 27
Fold:Chorismate lyase-like
Superfamily:Chorismate lyase-like
Family:UTRA domain
79d1qw1a1



not modelled 25.3 20
Fold:SH3-like barrel
Superfamily:C-terminal domain of transcriptional repressors
Family:FeoA-like
80c1ybyB_



not modelled 25.0 9
PDB header:translation
Chain: B: PDB Molecule:translation elongation factor p;
PDBTitle: conserved hypothetical protein cth-95 from clostridium thermocellum
81d1jt8a_



not modelled 24.9 16
Fold:OB-fold
Superfamily:Nucleic acid-binding proteins
Family:Cold shock DNA-binding domain-like
82c3p16A_



not modelled 24.9 19
PDB header:transferase
Chain: A: PDB Molecule:dna polymerase iii subunit beta;
PDBTitle: crystal structure of dna polymerase iii sliding clamp
83c3i4oA_



not modelled 24.7 10
PDB header:translation
Chain: A: PDB Molecule:translation initiation factor if-1;
PDBTitle: crystal structure of translation initiation factor 1 from2 mycobacterium tuberculosis
84c3nnqA_



not modelled 24.5 29
PDB header:viral protein
Chain: A: PDB Molecule:n-terminal domain of moloney murine leukemia virus
PDBTitle: crystal structure of the n-terminal domain of moloney murine leukemia2 virus integrase, northeast structural genomics consortium target or3
85d2pkha1



not modelled 24.3 18
Fold:Chorismate lyase-like
Superfamily:Chorismate lyase-like
Family:UTRA domain
86d2p19a1



not modelled 23.7 24
Fold:Chorismate lyase-like
Superfamily:Chorismate lyase-like
Family:UTRA domain
87d3bwga2



not modelled 23.3 9
Fold:Chorismate lyase-like
Superfamily:Chorismate lyase-like
Family:UTRA domain
88c3treA_



not modelled 23.3 5
PDB header:translation
Chain: A: PDB Molecule:elongation factor p;
PDBTitle: structure of a translation elongation factor p (efp) from coxiella2 burnetii
89d1h9ra1



not modelled 23.2 21
Fold:OB-fold
Superfamily:MOP-like
Family:BiMOP, duplicated molybdate-binding domain
90d1y5ia1



not modelled 22.9 13
Fold:Double psi beta-barrel
Superfamily:ADC-like
Family:Formate dehydrogenase/DMSO reductase, C-terminal domain
91d1d7qa_



not modelled 22.8 17
Fold:OB-fold
Superfamily:Nucleic acid-binding proteins
Family:Cold shock DNA-binding domain-like
92d2cu3a1



not modelled 22.8 17
Fold:beta-Grasp (ubiquitin-like)
Superfamily:MoaD/ThiS
Family:ThiS
93d1guta_



not modelled 22.0 14
Fold:OB-fold
Superfamily:MOP-like
Family:Molybdate/tungstate binding protein MOP
94d1dgsa2



not modelled 21.9 25
Fold:OB-fold
Superfamily:Nucleic acid-binding proteins
Family:DNA ligase/mRNA capping enzyme postcatalytic domain
95c1bkbA_



not modelled 21.8 31
PDB header:translation
Chain: A: PDB Molecule:translation initiation factor 5a;
PDBTitle: initiation factor 5a from archebacterium pyrobaculum2 aerophilum
96d2ogga1



not modelled 21.5 12
Fold:Chorismate lyase-like
Superfamily:Chorismate lyase-like
Family:UTRA domain
97d1dmra1



not modelled 21.4 14
Fold:Double psi beta-barrel
Superfamily:ADC-like
Family:Formate dehydrogenase/DMSO reductase, C-terminal domain
98d1zud21



not modelled 21.3 17
Fold:beta-Grasp (ubiquitin-like)
Superfamily:MoaD/ThiS
Family:ThiS
99d1qvpa_



not modelled 21.1 30
Fold:SH3-like barrel
Superfamily:C-terminal domain of transcriptional repressors
Family:FeoA-like
100d1tygb_



not modelled 20.6 19
Fold:beta-Grasp (ubiquitin-like)
Superfamily:MoaD/ThiS
Family:ThiS

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