Phyre Home Retrieve Phyre Job Id
Emailmdejesus@rockefeller.edu
DescriptionRVBD0604_(lpqO)_700242_701192
DateFri Jul 26 01:50:16 BST 2019
Unique Job ID2dc844bf751e40d5
SequenceMIRRRGARMA ... Download FASTA
Job Typenormal
Job Expiry

Summary 

Top model
Image coloured by rainbow N → C terminus
Model dimensions (Å):X:64.271 Y:35.067 Z:44.469
Model (left) based on template c1y7pB_
Top template information
PDB header:structural genomics, unknown function
Chain: B: PDB Molecule:hypothetical protein af1403;
PDBTitle: 1.9 a crystal structure of a protein of unknown function2 af1403 from archaeoglobus fulgidus, probable metabolic3 regulator
Confidence and coverage
Confidence: 84.9% Coverage: 45%
142 residues ( 45% of your sequence) have been modelled with 84.9% confidence by the single highest scoring template.
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Sequence analysis 

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Secondary structure and disorder prediction [Show] 

Domain analysis [Show] 

Detailed template information [Hide] 

 

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Template Alignment Coverage3D Model Confidence
% i.d. Template Information
1c1y7pB_



84.9 20
PDB header:structural genomics, unknown function
Chain: B: PDB Molecule:hypothetical protein af1403;
PDBTitle: 1.9 a crystal structure of a protein of unknown function2 af1403 from archaeoglobus fulgidus, probable metabolic3 regulator
2c3o1lB_



74.8 20
PDB header:hydrolase
Chain: B: PDB Molecule:formyltetrahydrofolate deformylase;
PDBTitle: crystal structure of a formyltetrahydrofolate deformylase (pspto_4314)2 from pseudomonas syringae pv. tomato str. dc3000 at 2.20 a resolution
3d2qmwa2



72.0 9
Fold:Ferredoxin-like
Superfamily:ACT-like
Family:Phenylalanine metabolism regulatory domain
4c6avhA_



65.8 16
PDB header:ligase, plant protein
Chain: A: PDB Molecule:gh3.15 acyl acid amido synthetase;
PDBTitle: gh3.15 acyl acid amido synthetase
5d1xoda1



59.7 28
Fold:PH domain-like barrel
Superfamily:PH domain-like
Family:Enabled/VASP homology 1 domain (EVH1 domain)
6c2im5C_



58.4 18
PDB header:transferase
Chain: C: PDB Molecule:nicotinate phosphoribosyltransferase;
PDBTitle: crystal structure of nicotinate phosphoribosyltransferase from2 porphyromonas gingivalis
7d1ddwa_



54.9 14
Fold:PH domain-like barrel
Superfamily:PH domain-like
Family:Enabled/VASP homology 1 domain (EVH1 domain)
8c5l0lB_



50.8 29
PDB header:unknown function
Chain: B: PDB Molecule:uncharacterized protein;
PDBTitle: crystal structure of uncharacterized protein lpg0439
9c2m3aA_



48.9 35
PDB header:dna binding protein
Chain: A: PDB Molecule:protein knl-2;
PDBTitle: nmr solution structure of a myb-like dna binding domain of knl-2 from2 c. elegans
10c2mdaB_



43.9 9
PDB header:oxidoreductase
Chain: B: PDB Molecule:tyrosine 3-monooxygenase;
PDBTitle: the solution structure of the regulatory domain of tyrosine2 hydroxylase
11c5xlmB_



42.0 25
PDB header:transferase
Chain: B: PDB Molecule:serine/threonine-protein kinase pkni;
PDBTitle: monomer form of m.tuberculosis pkni sensor domain
12c4j38A_



41.5 26
PDB header:immune system
Chain: A: PDB Molecule:outer surface protein e;
PDBTitle: structure of borrelia burgdorferi outer surface protein e in complex2 with factor h domains 19-20
13d1i7aa_



40.4 17
Fold:PH domain-like barrel
Superfamily:PH domain-like
Family:Enabled/VASP homology 1 domain (EVH1 domain)
14d1evha_



39.5 19
Fold:PH domain-like barrel
Superfamily:PH domain-like
Family:Enabled/VASP homology 1 domain (EVH1 domain)
15c3n0vD_



39.4 18
PDB header:hydrolase
Chain: D: PDB Molecule:formyltetrahydrofolate deformylase;
PDBTitle: crystal structure of a formyltetrahydrofolate deformylase (pp_0327)2 from pseudomonas putida kt2440 at 2.25 a resolution
16c2ivfB_



33.4 24
PDB header:oxidoreductase
Chain: B: PDB Molecule:ethylbenzene dehydrogenase beta-subunit;
PDBTitle: ethylbenzene dehydrogenase from aromatoleum aromaticum
17c4yubB_



31.8 23
PDB header:ligase
Chain: B: PDB Molecule:nicotinate phosphoribosyltransferase;
PDBTitle: crystal structure of human nicotinic acid phosphoribosyltransferase
18c6cxdA_



31.2 16
PDB header:hydrolase
Chain: A: PDB Molecule:peptidase b;
PDBTitle: crystal structure of peptidase b from yersinia pestis co92 at 2.75 a2 resolution
19c4hl7A_



30.0 12
PDB header:transferase
Chain: A: PDB Molecule:nicotinate phosphoribosyltransferase;
PDBTitle: crystal structure of nicotinate phosphoribosyltransferase (target2 nysgr-026035) from vibrio cholerae
20c3do6B_



28.5 20
PDB header:ligase
Chain: B: PDB Molecule:formate--tetrahydrofolate ligase;
PDBTitle: crystal structure of putative formyltetrahydrofolate synthetase2 (tm1766) from thermotoga maritima at 1.85 a resolution
21d1h70a_



not modelled 28.1 7
Fold:Pentein, beta/alpha-propeller
Superfamily:Pentein
Family:Dimethylarginine dimethylaminohydrolase DDAH
22c1ybeA_



not modelled 27.3 13
PDB header:transferase
Chain: A: PDB Molecule:nicotinate phosphoribosyltransferase;
PDBTitle: crystal structure of a nicotinate phosphoribosyltransferase
23c1zhvA_



not modelled 27.1 25
PDB header:structural genomics, unknown function
Chain: A: PDB Molecule:hypothetical protein atu0741;
PDBTitle: x-ray crystal structure protein atu0741 from agobacterium tumefaciens.2 northeast structural genomics consortium target atr8.
24c4bjuB_



not modelled 26.8 50
PDB header:isomerase
Chain: B: PDB Molecule:n-acetylglucosamine-phosphate mutase;
PDBTitle: genetic and structural validation of aspergillus fumigatus2 n-acetylphosphoglucosamine mutase as an antifungal target
25c5td7A_



not modelled 26.7 5
PDB header:hydrolase
Chain: A: PDB Molecule:zgc:55652;
PDBTitle: crystal structure of histone deacetylase 10
26c4maiA_



not modelled 26.5 24
PDB header:oxidoreductase
Chain: A: PDB Molecule:aa11 lytic polysaccharide monooxygenase;
PDBTitle: structure of aspergillus oryzae aa11 lytic polysaccharide2 monooxygenase with cu(i)
27d1pdoa_



not modelled 25.9 16
Fold:PTS system fructose IIA component-like
Superfamily:PTS system fructose IIA component-like
Family:EIIA-man component-like
28c3obiC_



not modelled 25.5 21
PDB header:hydrolase
Chain: C: PDB Molecule:formyltetrahydrofolate deformylase;
PDBTitle: crystal structure of a formyltetrahydrofolate deformylase (np_949368)2 from rhodopseudomonas palustris cga009 at 1.95 a resolution
29d1y7pa1



not modelled 25.4 15
Fold:Flavodoxin-like
Superfamily:CheY-like
Family:AF1403 C-terminal domain-like
30d1zy9a2



not modelled 24.7 13
Fold:TIM beta/alpha-barrel
Superfamily:(Trans)glycosidases
Family:YicI catalytic domain-like
31c3iprC_



not modelled 24.2 11
PDB header:transferase
Chain: C: PDB Molecule:pts system, iia component;
PDBTitle: crystal structure of the enterococcus faecalis gluconate2 specific eiia phosphotransferase system component
32d1xmka1



not modelled 22.4 22
Fold:DNA/RNA-binding 3-helical bundle
Superfamily:"Winged helix" DNA-binding domain
Family:Z-DNA binding domain
33c1bplA_



not modelled 22.3 19
PDB header:glycosyltransferase
Chain: A: PDB Molecule:alpha-1,4-glucan-4-glucanohydrolase;
PDBTitle: glycosyltransferase
34d1iuga_



not modelled 22.2 19
Fold:PLP-dependent transferase-like
Superfamily:PLP-dependent transferases
Family:Cystathionine synthase-like
35d1pbga_



not modelled 22.0 15
Fold:TIM beta/alpha-barrel
Superfamily:(Trans)glycosidases
Family:Family 1 of glycosyl hydrolase
36d1d7ka2



not modelled 21.7 21
Fold:TIM beta/alpha-barrel
Superfamily:PLP-binding barrel
Family:Alanine racemase-like, N-terminal domain
37c2jp2A_



not modelled 21.6 30
PDB header:signaling protein
Chain: A: PDB Molecule:sprouty-related, evh1 domain-containing protein
PDBTitle: solution structure and resonance assignment of the n-2 terminal evh1 domain from the human spred2 protein3 (sprouty-related protein with evh1 domain isoform 2)
38d1qz9a_



not modelled 21.6 16
Fold:PLP-dependent transferase-like
Superfamily:PLP-dependent transferases
Family:Cystathionine synthase-like
39d1ru8a_



not modelled 21.2 12
Fold:Adenine nucleotide alpha hydrolase-like
Superfamily:Adenine nucleotide alpha hydrolases-like
Family:N-type ATP pyrophosphatases
40d1qc6a_



not modelled 21.2 11
Fold:PH domain-like barrel
Superfamily:PH domain-like
Family:Enabled/VASP homology 1 domain (EVH1 domain)
41d1nh8a2



not modelled 21.2 15
Fold:Ferredoxin-like
Superfamily:GlnB-like
Family:ATP phosphoribosyltransferase (ATP-PRTase, HisG), regulatory C-terminal domain
42c1yirA_



not modelled 20.2 15
PDB header:transferase
Chain: A: PDB Molecule:nicotinate phosphoribosyltransferase 2;
PDBTitle: crystal structure of a nicotinate phosphoribosyltransferase
43c6czaB_



not modelled 20.0 20
PDB header:oxidoreductase
Chain: B: PDB Molecule:4fe-4s ferredoxin, iron-sulfur binding domain protein;
PDBTitle: the arsenate respiratory reductase (arr) complex from shewanella sp.2 ana-3 bound to phosphate
44d1yksa2



not modelled 19.7 18
Fold:P-loop containing nucleoside triphosphate hydrolases
Superfamily:P-loop containing nucleoside triphosphate hydrolases
Family:RNA helicase
45c4e4jJ_



not modelled 19.0 20
PDB header:hydrolase
Chain: J: PDB Molecule:arginine deiminase;
PDBTitle: crystal structure of arginine deiminase from mycoplasma penetrans
46d1m6sa_



not modelled 18.9 19
Fold:PLP-dependent transferase-like
Superfamily:PLP-dependent transferases
Family:AAT-like
47c3louB_



not modelled 18.5 22
PDB header:hydrolase
Chain: B: PDB Molecule:formyltetrahydrofolate deformylase;
PDBTitle: crystal structure of formyltetrahydrofolate deformylase (yp_105254.1)2 from burkholderia mallei atcc 23344 at 1.90 a resolution
48d1xw8a_



not modelled 17.8 20
Fold:7-stranded beta/alpha barrel
Superfamily:Glycoside hydrolase/deacetylase
Family:LamB/YcsF-like
49c3w7bB_



not modelled 17.8 27
PDB header:hydrolase
Chain: B: PDB Molecule:formyltetrahydrofolate deformylase;
PDBTitle: crystal structure of formyltetrahydrofolate deformylase from thermus2 thermophilus hb8
50c5mlkB_



not modelled 17.4 32
PDB header:ligase
Chain: B: PDB Molecule:acetyl-coa carboxylase;
PDBTitle: biotin dependent carboxylase acca3 dimer from mycobacterium2 tuberculosis (rv3285)
51d1o7fa1



not modelled 17.3 5
Fold:DNA/RNA-binding 3-helical bundle
Superfamily:"Winged helix" DNA-binding domain
Family:DEP domain
52d1szna2



not modelled 16.8 15
Fold:TIM beta/alpha-barrel
Superfamily:(Trans)glycosidases
Family:Amylase, catalytic domain
53d1a1va2



not modelled 16.8 18
Fold:P-loop containing nucleoside triphosphate hydrolases
Superfamily:P-loop containing nucleoside triphosphate hydrolases
Family:RNA helicase
54d1uasa2



not modelled 16.4 28
Fold:TIM beta/alpha-barrel
Superfamily:(Trans)glycosidases
Family:Amylase, catalytic domain
55c4yddF_



not modelled 16.4 26
PDB header:oxidoreductase
Chain: F: PDB Molecule:dmso reductase family type ii enzyme, iron-sulfur subunit;
PDBTitle: crystal structure of the perchlorate reductase pcrab from azospira2 suillum ps
56c4qg5D_



not modelled 15.5 26
PDB header:isomerase
Chain: D: PDB Molecule:putative phosphoglucomutase;
PDBTitle: crystal structure of phosphoglucomutase from leishmania major at 3.52 angstrom resolution
57c4ewvB_



not modelled 15.0 16
PDB header:ligase
Chain: B: PDB Molecule:4-substituted benzoates-glutamate ligase gh3.12;
PDBTitle: crystal structure of gh3.12 in complex with ampcpp
58d1knwa2



not modelled 14.5 14
Fold:TIM beta/alpha-barrel
Superfamily:PLP-binding barrel
Family:Alanine racemase-like, N-terminal domain
59c3a5vA_



not modelled 14.3 28
PDB header:hydrolase
Chain: A: PDB Molecule:alpha-galactosidase;
PDBTitle: crystal structure of alpha-galactosidase i from mortierella vinacea
60d1vlpa2



not modelled 14.2 12
Fold:TIM beta/alpha-barrel
Superfamily:Nicotinate/Quinolinate PRTase C-terminal domain-like
Family:Monomeric nicotinate phosphoribosyltransferase C-terminal domain
61d1ybea1



not modelled 14.1 13
Fold:TIM beta/alpha-barrel
Superfamily:Nicotinate/Quinolinate PRTase C-terminal domain-like
Family:Monomeric nicotinate phosphoribosyltransferase C-terminal domain
62d1m32a_



not modelled 14.0 19
Fold:PLP-dependent transferase-like
Superfamily:PLP-dependent transferases
Family:Cystathionine synthase-like
63d1zo0a1



not modelled 14.0 14
Fold:Acyl-CoA N-acyltransferases (Nat)
Superfamily:Acyl-CoA N-acyltransferases (Nat)
Family:Ornithine decarboxylase antizyme-like
64c3rmuD_



not modelled 13.7 9
PDB header:isomerase
Chain: D: PDB Molecule:methylmalonyl-coa epimerase, mitochondrial;
PDBTitle: crystal structure of human methylmalonyl-coa epimerase, mcee
65d1kfia1



not modelled 13.4 15
Fold:Phosphoglucomutase, first 3 domains
Superfamily:Phosphoglucomutase, first 3 domains
Family:Phosphoglucomutase, first 3 domains
66c2ci6A_



not modelled 13.3 21
PDB header:hydrolase
Chain: A: PDB Molecule:ng, ng-dimethylarginine dimethylaminohydrolase 1;
PDBTitle: crystal structure of dimethylarginine2 dimethylaminohydrolase i bound with zinc low ph
67c3a1iA_



not modelled 13.3 33
PDB header:hydrolase
Chain: A: PDB Molecule:amidase;
PDBTitle: crystal structure of rhodococcus sp. n-771 amidase complexed2 with benzamide
68c5jouA_



not modelled 13.3 14
PDB header:hydrolase
Chain: A: PDB Molecule:alpha-xylosidase bogh31a;
PDBTitle: bacteroides ovatus xyloglucan pul gh31
69c4jrbA_



not modelled 13.2 30
PDB header:lipid binding protein
Chain: A: PDB Molecule:green fluorescent protein;
PDBTitle: structure of cockroach allergen bla g 1 tandem repeat as a egfp fusion
70c2pfuA_



not modelled 13.1 8
PDB header:transport protein
Chain: A: PDB Molecule:biopolymer transport exbd protein;
PDBTitle: nmr strcuture determination of the periplasmic domain of exbd from2 e.coli
71c3lrmB_



not modelled 12.8 34
PDB header:hydrolase
Chain: B: PDB Molecule:alpha-galactosidase 1;
PDBTitle: structure of alfa-galactosidase from saccharomyces cerevisiae with2 raffinose
72c5ns6C_



not modelled 12.7 21
PDB header:hydrolase
Chain: C: PDB Molecule:beta-glucosidase;
PDBTitle: crystal structure of beta-glucosidase bglm-g1 from marine metagenome
73d1p88a_



not modelled 12.7 21
Fold:IF3-like
Superfamily:EPT/RTPC-like
Family:Enolpyruvate transferase, EPT
74c2rgmA_



not modelled 12.6 18
PDB header:hydrolase
Chain: A: PDB Molecule:beta-glucosidase;
PDBTitle: rice bglu1 beta-glucosidase, a plant exoglucanase/beta-glucosidase
75c3e9kA_



not modelled 12.3 20
PDB header:hydrolase
Chain: A: PDB Molecule:kynureninase;
PDBTitle: crystal structure of homo sapiens kynureninase-3-hydroxyhippuric acid2 inhibitor complex
76c6eacC_



not modelled 12.3 35
PDB header:transferase
Chain: C: PDB Molecule:selo;
PDBTitle: pseudomonas syringae selo
77c3nx3A_



not modelled 12.2 13
PDB header:transferase
Chain: A: PDB Molecule:acetylornithine aminotransferase;
PDBTitle: crystal structure of acetylornithine aminotransferase (argd) from2 campylobacter jejuni
78c1njjC_



not modelled 12.1 13
PDB header:lyase
Chain: C: PDB Molecule:ornithine decarboxylase;
PDBTitle: crystal structure determination of t. brucei ornithine decarboxylase2 bound to d-ornithine and to g418
79c5xgzA_



not modelled 12.0 33
PDB header:hydrolase
Chain: A: PDB Molecule:beta-glycosidase;
PDBTitle: metagenomic glucose-tolerant glycosidase
80c2pljA_



not modelled 12.0 14
PDB header:lyase
Chain: A: PDB Molecule:lysine/ornithine decarboxylase;
PDBTitle: crystal structure of lysine/ornithine decarboxylase complexed with2 putrescine from vibrio vulnificus
81c1c4gB_



not modelled 11.9 14
PDB header:transferase
Chain: B: PDB Molecule:protein (alpha-d-glucose 1-phosphate phosphoglucomutase);
PDBTitle: phosphoglucomutase vanadate based transition state analog complex
82d2dfaa1



not modelled 11.9 16
Fold:7-stranded beta/alpha barrel
Superfamily:Glycoside hydrolase/deacetylase
Family:LamB/YcsF-like
83d8ohma2



not modelled 11.9 21
Fold:P-loop containing nucleoside triphosphate hydrolases
Superfamily:P-loop containing nucleoside triphosphate hydrolases
Family:RNA helicase
84c2hzpA_



not modelled 11.8 18
PDB header:hydrolase
Chain: A: PDB Molecule:kynureninase;
PDBTitle: crystal structure of homo sapiens kynureninase
85c1ti2F_



not modelled 11.7 21
PDB header:oxidoreductase
Chain: F: PDB Molecule:pyrogallol hydroxytransferase small subunit;
PDBTitle: crystal structure of pyrogallol-phloroglucinol transhydroxylase from2 pelobacter acidigallici
86c6fmgC_



not modelled 11.6 24
PDB header:transferase
Chain: C: PDB Molecule:pts system mannose-specific transporter subunit iiab;
PDBTitle: structure of the mannose transporter iia domain from streptococcus2 pneumoniae
87c4nzjA_



not modelled 11.4 21
PDB header:hydrolase
Chain: A: PDB Molecule:putative alpha-galactosidase;
PDBTitle: crystal structure of a putative alpha-galactosidase (bf1418) from2 bacteroides fragilis nctc 9343 at 1.57 a resolution
88d1hx0a2



not modelled 11.3 26
Fold:TIM beta/alpha-barrel
Superfamily:(Trans)glycosidases
Family:Amylase, catalytic domain
89d1a9xa4



not modelled 11.1 16
Fold:PreATP-grasp domain
Superfamily:PreATP-grasp domain
Family:BC N-terminal domain-like
90c2ro0A_



not modelled 11.0 33
PDB header:transferase
Chain: A: PDB Molecule:histone acetyltransferase esa1;
PDBTitle: solution structure of the knotted tudor domain of the yeast2 histone acetyltransferase, esa1
91d1r46a2



not modelled 10.8 15
Fold:TIM beta/alpha-barrel
Superfamily:(Trans)glycosidases
Family:Amylase, catalytic domain
92c3mjdA_



not modelled 10.8 10
PDB header:transferase
Chain: A: PDB Molecule:orotate phosphoribosyltransferase;
PDBTitle: 1.9 angstrom crystal structure of orotate phosphoribosyltransferase2 (pyre) francisella tularensis.
93c6oswA_



not modelled 10.8 24
PDB header:cell cycle
Chain: A: PDB Molecule:forkhead box m1;
PDBTitle: an order-to-disorder structural switch activates the foxm12 transcription factor
94d3beda1



not modelled 10.7 15
Fold:PTS system fructose IIA component-like
Superfamily:PTS system fructose IIA component-like
Family:EIIA-man component-like
95d1yira1



not modelled 10.7 17
Fold:TIM beta/alpha-barrel
Superfamily:Nicotinate/Quinolinate PRTase C-terminal domain-like
Family:Monomeric nicotinate phosphoribosyltransferase C-terminal domain
96c5gjmB_



not modelled 10.7 24
PDB header:lyase
Chain: B: PDB Molecule:lysine/ornithine decarboxylase;
PDBTitle: crystal strcuture of lysine decarboxylase from selenomonas ruminantium2 in c2 space group
97c4fymA_



not modelled 10.7 15
PDB header:transferase
Chain: A: PDB Molecule:orotate phosphoribosyltransferase;
PDBTitle: crystal structure of plasmodium falciparum orotate2 phosphoribosyltransferase
98d1jaea2



not modelled 10.6 19
Fold:TIM beta/alpha-barrel
Superfamily:(Trans)glycosidases
Family:Amylase, catalytic domain
99c1u8sB_



not modelled 10.5 16
PDB header:transcription
Chain: B: PDB Molecule:glycine cleavage system transcriptional
PDBTitle: crystal structure of putative glycine cleavage system2 transcriptional repressor

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