Phyre Home Retrieve Phyre Job Id
Emailmdejesus@rockefeller.edu
DescriptionRVBD0606_(-)_702019_702762
DateFri Jul 26 01:50:16 BST 2019
Unique Job ID35152ea60806ff31
SequenceMPRLEIPNGW ... Download FASTA
Job Typenormal
Job Expiry

Summary 

Top model
Image coloured by rainbow N → C terminus
Model dimensions (Å):X:37.455 Y:20.076 Z:22.299
Model (left) based on template c1kcfB_
Top template information
PDB header:hydrolase
Chain: B: PDB Molecule:hypothetical 30.2 kd protein c25g10.02 in
PDBTitle: crystal structure of the yeast mitochondrial holliday2 junction resolvase, ydc2
Confidence and coverage
Confidence: 89.8% Coverage: 9%
21 residues ( 9% of your sequence) have been modelled with 89.8% confidence by the single highest scoring template.
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Sequence analysis 

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Secondary structure and disorder prediction [Show] 

Domain analysis [Show] 

Detailed template information [Hide] 

 

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Template Alignment Coverage3D Model Confidence
% i.d. Template Information
1c1kcfB_



89.8 14
PDB header:hydrolase
Chain: B: PDB Molecule:hypothetical 30.2 kd protein c25g10.02 in
PDBTitle: crystal structure of the yeast mitochondrial holliday2 junction resolvase, ydc2
2c5j3bB_



67.2 23
PDB header:translation
Chain: B: PDB Molecule:elongation factor p;
PDBTitle: structure of translation elongation factor p from acinetobacter2 baumannii
3c5id6A_



65.5 16
PDB header:hydrolase
Chain: A: PDB Molecule:cpf1;
PDBTitle: structure of cpf1/rna complex
4c5wqeA_



60.6 31
PDB header:rna binding protein
Chain: A: PDB Molecule:crispr-associated endonuclease c2c1;
PDBTitle: crystal structure of alicyclobacillus acidoterrestris c2c1 in complex2 with single-guide rna at 3.1 angstrom resolution
5c5u31A_



46.3 25
PDB header:hydrolase/dna
Chain: A: PDB Molecule:crispr-associated endonuclease c2c1;
PDBTitle: crystal structure of aacc2c1-sgrna-8mer substrate dna ternary complex
6c3oyyA_



39.3 10
PDB header:translation
Chain: A: PDB Molecule:elongation factor p;
PDBTitle: structure of pseudomonas aeruginosa elongation factor p
7c3a5zD_



32.1 28
PDB header:ligase
Chain: D: PDB Molecule:elongation factor p;
PDBTitle: crystal structure of escherichia coli genx in complex with elongation2 factor p
8d1ueba3



29.4 30
Fold:OB-fold
Superfamily:Nucleic acid-binding proteins
Family:Cold shock DNA-binding domain-like
9c1uebB_



28.2 25
PDB header:rna binding protein
Chain: B: PDB Molecule:elongation factor p;
PDBTitle: crystal structure of translation elongation factor p from2 thermus thermophilus hb8
10c1ybyB_



25.7 23
PDB header:translation
Chain: B: PDB Molecule:translation elongation factor p;
PDBTitle: conserved hypothetical protein cth-95 from clostridium thermocellum
11d1x2na1



25.3 18
Fold:DNA/RNA-binding 3-helical bundle
Superfamily:Homeodomain-like
Family:Homeodomain
12c2oceA_



21.2 22
PDB header:structural genomics, unknown function
Chain: A: PDB Molecule:hypothetical protein pa5201;
PDBTitle: crystal structure of tex family protein pa5201 from2 pseudomonas aeruginosa
13d1g4ma1



21.0 24
Fold:Immunoglobulin-like beta-sandwich
Superfamily:E set domains
Family:Arrestin/Vps26-like
14c5b43A_



18.0 21
PDB header:hydrolase/rna/dna
Chain: A: PDB Molecule:crispr-associated endonuclease cpf1;
PDBTitle: crystal structure of acidaminococcus sp. cpf1 in complex with crrna2 and target dna
15c6iv6A_



15.8 23
PDB header:immune system/rna
Chain: A: PDB Molecule:nuclease;
PDBTitle: cryo-em structure of acrva5-acetylated mbcas12a in complex with crrna
16d1cf1a1



14.9 31
Fold:Immunoglobulin-like beta-sandwich
Superfamily:E set domains
Family:Arrestin/Vps26-like
17c3f3hA_



14.8 18
PDB header:antitumor protein
Chain: A: PDB Molecule:immunomodulatory protein ling zhi-8;
PDBTitle: crystal structure and anti-tumor activity of lz-8 from the fungus2 ganoderma lucidium
18c2da7A_



13.8 11
PDB header:dna binding protein
Chain: A: PDB Molecule:zinc finger homeobox protein 1b;
PDBTitle: solution structure of the homeobox domain of zinc finger2 homeobox protein 1b (smad interacting protein 1)
19d1mjda_



12.4 14
Fold:beta-Grasp (ubiquitin-like)
Superfamily:Doublecortin (DC)
Family:Doublecortin (DC)
20c5mgaA_



12.4 32
PDB header:hydrolase
Chain: A: PDB Molecule:crispr-associated endonuclease cpf1;
PDBTitle: structure of the cpf1 endonuclease r-loop complex after dna cleavage
21c5nfvA_



not modelled 11.2 32
PDB header:hydrolase
Chain: A: PDB Molecule:crispr-associated endonuclease cpf1;
PDBTitle: crystal structure of catalytically inactive fncas12 mutant bound to an2 r-loop structure containing a pre-crrna mimic and full-length dna3 target
22c4bl0B_



not modelled 10.7 9
PDB header:cell cycle
Chain: B: PDB Molecule:checkpoint serine/threonine-protein kinase bub1;
PDBTitle: crystal structure of yeast bub3-bub1 bound to phospho-spc105
23d1du6a_



not modelled 10.7 31
Fold:DNA/RNA-binding 3-helical bundle
Superfamily:Homeodomain-like
Family:Homeodomain
24d2r5yb1



not modelled 10.6 24
Fold:DNA/RNA-binding 3-helical bundle
Superfamily:Homeodomain-like
Family:Homeodomain
25c2e19A_



not modelled 10.5 15
PDB header:transcription
Chain: A: PDB Molecule:transcription factor 8;
PDBTitle: solution structure of the homeobox domain from human nil-2-2 a zinc finger protein, transcription factor 8
26d1yrnb_



not modelled 9.5 13
Fold:DNA/RNA-binding 3-helical bundle
Superfamily:Homeodomain-like
Family:Homeodomain
27c4v00B_



not modelled 9.1 9
PDB header:antimicrobial protein
Chain: B: PDB Molecule:monotreme lactating protein;
PDBTitle: structural and functional characterization of a novel monotreme-2 specific protein from the milk of the platypus
28c2dmsA_



not modelled 9.1 25
PDB header:dna binding protein
Chain: A: PDB Molecule:homeobox protein otx2;
PDBTitle: solution structure of the homeobox domain of homeobox2 protein otx2
29c3td7A_



not modelled 8.8 17
PDB header:oxidoreductase
Chain: A: PDB Molecule:fad-linked sulfhydryl oxidase r596;
PDBTitle: crysal structure of the mimivirus sulfhydryl oxidase r596
30c3nauA_



not modelled 8.6 29
PDB header:transcription
Chain: A: PDB Molecule:zinc fingers and homeoboxes protein 2;
PDBTitle: crystal structure of zhx2 hd2 (zinc-fingers and homeoboxes protein 2,2 homeodomain 2)
31c3zyyY_



not modelled 8.4 11
PDB header:iron-sulfur-binding protein
Chain: Y: PDB Molecule:iron-sulfur cluster binding protein;
PDBTitle: reductive activator for corrinoid,iron-sulfur protein
32d2f3ci1



not modelled 8.3 7
Fold:Kazal-type serine protease inhibitors
Superfamily:Kazal-type serine protease inhibitors
Family:Ovomucoid domain III-like
33c5gjvF_



not modelled 7.9 36
PDB header:membrane protein
Chain: F: PDB Molecule:voltage-dependent calcium channel subunit alpha-2/delta-1;
PDBTitle: structure of the mammalian voltage-gated calcium channel cav1.12 complex at near atomic resolution
34d1p7ia_



not modelled 7.7 14
Fold:DNA/RNA-binding 3-helical bundle
Superfamily:Homeodomain-like
Family:Homeodomain
35d1osya_



not modelled 7.7 23
Fold:Immunoglobulin-like beta-sandwich
Superfamily:Fungal immunomodulatory protein, FIP
Family:Fungal immunomodulatory protein, FIP
36d1le8a_



not modelled 7.6 13
Fold:DNA/RNA-binding 3-helical bundle
Superfamily:Homeodomain-like
Family:Homeodomain
37c4uysA_



not modelled 7.4 11
PDB header:cell adhesion
Chain: A: PDB Molecule:flocculation protein flo11;
PDBTitle: x-ray structure of the n-terminal domain of the flocculin2 flo11 from saccharomyces cerevisiae
38c3a03A_



not modelled 7.3 19
PDB header:gene regulation
Chain: A: PDB Molecule:t-cell leukemia homeobox protein 2;
PDBTitle: crystal structure of hox11l1 homeodomain
39c2cqjA_



not modelled 7.3 14
PDB header:rna binding protein
Chain: A: PDB Molecule:u3 small nucleolar ribonucleoprotein protein
PDBTitle: solution structure of the s4 domain of u3 small nucleolar2 ribonucleoprotein protein imp3 homolog
40c3narA_



not modelled 7.2 38
PDB header:transcription
Chain: A: PDB Molecule:zinc fingers and homeoboxes protein 1;
PDBTitle: crystal structure of zhx1 hd4 (zinc-fingers and homeoboxes protein 1,2 homeodomain 4)
41c2lk2A_



not modelled 7.0 11
PDB header:transcription
Chain: A: PDB Molecule:homeobox protein tgif1;
PDBTitle: solution nmr structure of homeobox domain (171-248) of human homeobox2 protein tgif1, northeast structural genomics consortium target3 hr4411b
42c3zyyX_



not modelled 7.0 11
PDB header:iron-sulfur-binding protein
Chain: X: PDB Molecule:iron-sulfur cluster binding protein;
PDBTitle: reductive activator for corrinoid,iron-sulfur protein
43d1r5ba2



not modelled 6.7 13
Fold:Elongation factor/aminomethyltransferase common domain
Superfamily:EF-Tu/eEF-1alpha/eIF2-gamma C-terminal domain
Family:EF-Tu/eEF-1alpha/eIF2-gamma C-terminal domain
44d1uhsa_



not modelled 6.7 19
Fold:DNA/RNA-binding 3-helical bundle
Superfamily:Homeodomain-like
Family:Homeodomain
45c4ehpB_



not modelled 6.6 10
PDB header:cell adhesion
Chain: B: PDB Molecule:catenin alpha-1;
PDBTitle: crystal structure of human vinculin head domain (residues 1-252) in2 complex with alpha-catenin (residues 277-382)
46c4xtbA_



not modelled 6.5 22
PDB header:transport protein
Chain: A: PDB Molecule:calcium uniporter protein, mitochondrial;
PDBTitle: crystal structure of the n-terminal domain of the human mitochondrial2 calcium uniporter
47d1bw5a_



not modelled 6.5 21
Fold:DNA/RNA-binding 3-helical bundle
Superfamily:Homeodomain-like
Family:Homeodomain
48c1yo7A_



not modelled 6.4 19
PDB header:replication regulator
Chain: A: PDB Molecule:regulatory protein rop;
PDBTitle: re-engineering topology of the homodimeric rop protein into a single-2 chain 4-helix bundle
49d1czan1



not modelled 6.0 15
Fold:Ribonuclease H-like motif
Superfamily:Actin-like ATPase domain
Family:Hexokinase
50c2da5A_



not modelled 6.0 33
PDB header:dna binding protein
Chain: A: PDB Molecule:zinc fingers and homeoboxes protein 3;
PDBTitle: solution structure of the second homeobox domain of zinc2 fingers and homeoboxes protein 3 (triple homeobox 13 protein)
51c5lf8A_



not modelled 5.9 28
PDB header:hydrolase
Chain: A: PDB Molecule:nucleoside diphosphate-linked moiety x motif 17;
PDBTitle: human nucleoside diphosphate-linked moiety x motif 17 (nudt17)
52c4v19X_



not modelled 5.9 22
PDB header:ribosome
Chain: X: PDB Molecule:mitoribosomal protein ul23m, mrpl23;
PDBTitle: structure of the large subunit of the mammalian mitoribosome, part 12 of 2
53c2ly9A_



not modelled 5.8 19
PDB header:transcription
Chain: A: PDB Molecule:zinc fingers and homeoboxes protein 1;
PDBTitle: solution nmr structure of homeobox 2 domain from human zhx1 repressor,2 northeast structural genomics consortium (nesg) target hr7907f
54d1k61a_



not modelled 5.7 13
Fold:DNA/RNA-binding 3-helical bundle
Superfamily:Homeodomain-like
Family:Homeodomain
55d1du0a_



not modelled 5.6 19
Fold:DNA/RNA-binding 3-helical bundle
Superfamily:Homeodomain-like
Family:Homeodomain
56d2hddb_



not modelled 5.6 26
Fold:DNA/RNA-binding 3-helical bundle
Superfamily:Homeodomain-like
Family:Homeodomain
57d2fxaa1



not modelled 5.5 13
Fold:DNA/RNA-binding 3-helical bundle
Superfamily:"Winged helix" DNA-binding domain
Family:MarR-like transcriptional regulators
58c3a56B_



not modelled 5.4 18
PDB header:hydrolase
Chain: B: PDB Molecule:protein-glutaminase;
PDBTitle: crystal structure of pro- protein-glutaminase
59d1v4sa1



not modelled 5.3 12
Fold:Ribonuclease H-like motif
Superfamily:Actin-like ATPase domain
Family:Hexokinase
60c2k1oA_



not modelled 5.3 21
PDB header:gene regulation
Chain: A: PDB Molecule:putative;
PDBTitle: nmr structure of helicobacter pylori jhp0511 (hp0564).
61c5luxK_



not modelled 5.3 25
PDB header:transcription
Chain: K: PDB Molecule:homeobox protein cdx-1;
PDBTitle: homeobox transcription factor cdx1 bound to methylated dna
62d1lfup_



not modelled 5.1 13
Fold:DNA/RNA-binding 3-helical bundle
Superfamily:Homeodomain-like
Family:Homeodomain
63d1pufb_



not modelled 5.1 21
Fold:DNA/RNA-binding 3-helical bundle
Superfamily:Homeodomain-like
Family:Homeodomain

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