Phyre Home Retrieve Phyre Job Id
Emailmdejesus@rockefeller.edu
DescriptionRVBD0607_(-)_702816_703202
DateFri Jul 26 01:50:16 BST 2019
Unique Job ID4945088985b1d1a2
SequenceVGAWQTADTM ... Download FASTA
Job Typenormal
Job Expiry

Summary 

Top model
Image coloured by rainbow N → C terminus
Model dimensions (Å):X:21.393 Y:33.499 Z:15.842
Model (left) based on template c3ktbD_
Top template information
PDB header:transcription regulator
Chain: D: PDB Molecule:arsenical resistance operon trans-acting repressor;
PDBTitle: crystal structure of arsenical resistance operon trans-acting2 repressor from bacteroides vulgatus atcc 8482
Confidence and coverage
Confidence: 29.2% Coverage: 28%
36 residues ( 28% of your sequence) have been modelled with 29.2% confidence by the single highest scoring template.
You may wish to submit your sequence to Phyrealarm. This will automatically scan your sequence every week for new potential templates as they appear in the Phyre2 library.
Please note: You must be registered and logged in to use Phyrealarm.
3D viewing
Interactive 3D view in JSmol
For other options to view your downloaded structure offline see the FAQ

Sequence analysis 

Download FASTA version

Secondary structure and disorder prediction [Show] 

Domain analysis [Show] 

Detailed template information [Hide] 

 

#
Template Alignment Coverage3D Model Confidence
% i.d. Template Information
1c3ktbD_



29.2 11
PDB header:transcription regulator
Chain: D: PDB Molecule:arsenical resistance operon trans-acting repressor;
PDBTitle: crystal structure of arsenical resistance operon trans-acting2 repressor from bacteroides vulgatus atcc 8482
2d2gs4a1



27.4 20
Fold:Ferritin-like
Superfamily:Ferritin-like
Family:YciF-like
3c2bdqA_



27.1 12
PDB header:metal transport
Chain: A: PDB Molecule:copper homeostasis protein cutc;
PDBTitle: crystal structure of the putative copper homeostasis protein cutc from2 streptococcus agalactiae, northeast strucural genomics target sar15.
4c5vxvA_



26.9 38
PDB header:membrane protein
Chain: A: PDB Molecule:peroxisomal membrane protein pex15;
PDBTitle: peroxisomal membrane protein pex15
5c6g2jY_



26.3 29
PDB header:oxidoreductase
Chain: Y: PDB Molecule:mcg5603;
PDBTitle: mouse mitochondrial complex i in the active state
6c5ldwY_



24.7 21
PDB header:oxidoreductase
Chain: Y: PDB Molecule:nadh dehydrogenase [ubiquinone] 1 alpha subcomplex subunit
PDBTitle: structure of mammalian respiratory complex i, class1
7c1wwuA_



20.3 27
PDB header:structural genomics, unknown function
Chain: A: PDB Molecule:hypothetical protein flj21935;
PDBTitle: solution structure of the sam_pnt domain of human protein2 flj21935
8c2pg8C_



19.9 42
PDB header:ligand binding protein
Chain: C: PDB Molecule:dpgc;
PDBTitle: crystal structure of r254k mutanat of dpgc with bound substrate analog
9d1yl7a2



18.2 26
Fold:FwdE/GAPDH domain-like
Superfamily:Glyceraldehyde-3-phosphate dehydrogenase-like, C-terminal domain
Family:Dihydrodipicolinate reductase-like
10c3trkA_



17.4 21
PDB header:hydrolase
Chain: A: PDB Molecule:nonstructural polyprotein;
PDBTitle: structure of the chikungunya virus nsp2 protease
11d1sxja1



15.8 12
Fold:post-AAA+ oligomerization domain-like
Superfamily:post-AAA+ oligomerization domain-like
Family:DNA polymerase III clamp loader subunits, C-terminal domain
12d2foka4



14.5 22
Fold:Restriction endonuclease-like
Superfamily:Restriction endonuclease-like
Family:Restriction endonuclease FokI, C-terminal (catalytic) domain
13c3fn2A_



14.5 47
PDB header:transferase
Chain: A: PDB Molecule:putative sensor histidine kinase domain;
PDBTitle: crystal structure of a putative sensor histidine kinase domain from2 clostridium symbiosum atcc 14940
14c5gzxD_



14.5 14
PDB header:hydrolase
Chain: D: PDB Molecule:(r)-2-haloacid dehalogenase;
PDBTitle: the complex structure of d-2-haloacid dehalogenase mutant with d-2-cpa
15c3lvwA_



14.3 57
PDB header:ligase
Chain: A: PDB Molecule:glutamate--cysteine ligase;
PDBTitle: glutathione-inhibited scgcl
16c3kgkA_



13.8 28
PDB header:chaperone
Chain: A: PDB Molecule:arsenical resistance operon trans-acting repressor arsd;
PDBTitle: crystal structure of arsd
17d1nxha_



13.8 14
Fold:Hypothetical protein MTH393
Superfamily:Hypothetical protein MTH393
Family:Hypothetical protein MTH393
18c4m55F_



13.5 25
PDB header:lyase
Chain: F: PDB Molecule:udp-glucuronic acid decarboxylase 1;
PDBTitle: crystal structure of human udp-xylose synthase r236h substitution
19d2yvta1



13.1 17
Fold:Metallo-dependent phosphatases
Superfamily:Metallo-dependent phosphatases
Family:TT1561-like
20c5yoxB_



12.6 26
PDB header:lyase
Chain: B: PDB Molecule:hd domain-containing protein ygl101w;
PDBTitle: hd domain-containing protein ygk1(ygl101w)
21c2e8mA_



not modelled 10.3 13
PDB header:signaling protein
Chain: A: PDB Molecule:epidermal growth factor receptor kinase
PDBTitle: solution structure of the c-terminal sam-domain of2 epidermal growth receptor pathway substrate 8
22c2q9lA_



not modelled 10.1 11
PDB header:hydrolase
Chain: A: PDB Molecule:hypothetical protein;
PDBTitle: crystal structure of imazg from vibrio dat 722: ctag-imazg (p43212)
23d2gyqa1



not modelled 10.1 18
Fold:Ferritin-like
Superfamily:Ferritin-like
Family:YciF-like
24c3fwbB_



not modelled 9.9 21
PDB header:cell cycle, transcription
Chain: B: PDB Molecule:nuclear mrna export protein sac3;
PDBTitle: sac3:sus1:cdc31 complex
25c3ro3B_



not modelled 9.9 40
PDB header:protein binding
Chain: B: PDB Molecule:peptide of protein inscuteable homolog;
PDBTitle: crystal structure of lgn/minscuteable complex
26c6nvoA_



not modelled 9.0 13
PDB header:dna binding protein
Chain: A: PDB Molecule:nuclease mpe;
PDBTitle: crystal structure of pseudomonas putida nuclease mpe
27d1diha2



not modelled 8.9 32
Fold:FwdE/GAPDH domain-like
Superfamily:Glyceraldehyde-3-phosphate dehydrogenase-like, C-terminal domain
Family:Dihydrodipicolinate reductase-like
28c4jhkC_



not modelled 8.8 47
PDB header:translation
Chain: C: PDB Molecule:sb:cb157 protein;
PDBTitle: crystal structure of danio rerio slip1 in complex with slbp
29d1oaoa_



not modelled 8.5 31
Fold:Prismane protein-like
Superfamily:Prismane protein-like
Family:Carbon monoxide dehydrogenase
30d1gc5a_



not modelled 8.3 15
Fold:Ribokinase-like
Superfamily:Ribokinase-like
Family:ADP-specific Phosphofructokinase/Glucokinase
31d2bwba1



not modelled 8.3 50
Fold:RuvA C-terminal domain-like
Superfamily:UBA-like
Family:UBA domain
32c2lo0B_



not modelled 8.2 38
PDB header:protein binding
Chain: B: PDB Molecule:uncharacterized protein;
PDBTitle: solution structure of the get5 carboxyl domain from a. fumigatus
33d1yt3a2



not modelled 8.2 30
Fold:SAM domain-like
Superfamily:HRDC-like
Family:RNase D C-terminal domains
34d1kyfa1



not modelled 7.9 42
Fold:Immunoglobulin-like beta-sandwich
Superfamily:Clathrin adaptor appendage domain
Family:Alpha-adaptin ear subdomain-like
35c1wymA_



not modelled 7.8 13
PDB header:structural protein
Chain: A: PDB Molecule:transgelin-2;
PDBTitle: solution structure of the ch domain of human transgelin-2
36c3bjxB_



not modelled 7.6 10
PDB header:hydrolase
Chain: B: PDB Molecule:halocarboxylic acid dehalogenase dehi;
PDBTitle: structure of a group i haloacid dehalogenase from2 pseudomonas putida strain pp3
37d1s5da_



not modelled 7.6 17
Fold:ADP-ribosylation
Superfamily:ADP-ribosylation
Family:ADP-ribosylating toxins
38c4zdtB_



not modelled 7.6 23
PDB header:hydrolase
Chain: B: PDB Molecule:structure-specific endonuclease subunit slx4;
PDBTitle: crystal structure of the ring finger domain of slx1 in complex with2 the c-terminal domain of slx4
39c5fvkD_



not modelled 7.4 36
PDB header:hydrolase
Chain: D: PDB Molecule:vps4-associated protein 1;
PDBTitle: crystal structure of vps4-vfa1 complex from s.cerevisiae at 1.66 a2 resolution.
40d1veja1



not modelled 6.7 30
Fold:RuvA C-terminal domain-like
Superfamily:UBA-like
Family:UBA domain
41c1wr1B_



not modelled 6.6 50
PDB header:signaling protein
Chain: B: PDB Molecule:ubiquitin-like protein dsk2;
PDBTitle: the complex sturcture of dsk2p uba with ubiquitin
42c6elqA_



not modelled 6.5 31
PDB header:oxidoreductase
Chain: A: PDB Molecule:carbon monoxide dehydrogenase;
PDBTitle: carbon monoxide dehydrogenase iv from carboxydothermus2 hydrogenoformans
43c3echC_



not modelled 6.5 57
PDB header:transcription, transcription regulation
Chain: C: PDB Molecule:25-mer fragment of protein armr;
PDBTitle: the marr-family repressor mexr in complex with its antirepressor armr
44c4niqD_



not modelled 6.5 36
PDB header:protein transport
Chain: D: PDB Molecule:vps4-associated protein 1;
PDBTitle: crystal structure of vps4 mit-vfa1 mim2
45c5fvkC_



not modelled 6.5 36
PDB header:hydrolase
Chain: C: PDB Molecule:vps4-associated protein 1;
PDBTitle: crystal structure of vps4-vfa1 complex from s.cerevisiae at 1.66 a2 resolution.
46c4niqC_



not modelled 6.4 36
PDB header:protein transport
Chain: C: PDB Molecule:vps4-associated protein 1;
PDBTitle: crystal structure of vps4 mit-vfa1 mim2
47c4ccsA_



not modelled 6.4 14
PDB header:unknown function
Chain: A: PDB Molecule:cbix;
PDBTitle: the structure of cbix, the terminal enzyme for biosynthesis2 of siroheme in denitrifying bacteria
48c4guaB_



not modelled 6.3 14
PDB header:hydrolase
Chain: B: PDB Molecule:non-structural polyprotein;
PDBTitle: alphavirus p23pro-zbd
49c5mq9A_



not modelled 6.2 23
PDB header:translation
Chain: A: PDB Molecule:uncharacterized protein yacp;
PDBTitle: crystal structure of rae1 (yacp) from bacillus subtilis (w164l mutant)
50c1yv0I_



not modelled 6.2 25
PDB header:contractile protein
Chain: I: PDB Molecule:troponin i, fast skeletal muscle;
PDBTitle: crystal structure of skeletal muscle troponin in the ca2+-free state
51c6b6xA_



not modelled 6.2 31
PDB header:oxidoreductase
Chain: A: PDB Molecule:carbon monoxide dehydrogenase;
PDBTitle: crystal structure of desulfovibrio vulgaris carbon monoxide2 dehydrogenase, dithionite-reduced (protein batch 2), canonical c-3 cluster
52c3sf4F_



not modelled 6.1 40
PDB header:signaling protein/protein binding
Chain: F: PDB Molecule:protein inscuteable homolog;
PDBTitle: crystal structure of the complex between the conserved cell polarity2 proteins inscuteable and lgn
53d1p94a_



not modelled 6.1 56
Fold:Ribbon-helix-helix
Superfamily:Ribbon-helix-helix
Family:CopG-like
54c6nd4D_



not modelled 6.1 29
PDB header:ribosome
Chain: D: PDB Molecule:bud21;
PDBTitle: conformational switches control early maturation of the eukaryotic2 small ribosomal subunit
55c6gtsC_



not modelled 6.0 31
PDB header:transcription
Chain: C: PDB Molecule:duf1778 domain-containing protein;
PDBTitle: structure of the atat-atar complex bound dna
56c5ejcD_



not modelled 5.9 44
PDB header:signaling protein
Chain: D: PDB Molecule:hamartin;
PDBTitle: crystal structural of the tsc1-tbc1d7 complex
57c2hwkA_



not modelled 5.7 22
PDB header:hydrolase
Chain: A: PDB Molecule:helicase nsp2;
PDBTitle: crystal structure of venezuelan equine encephalitis alphavirus nsp22 protease domain
58d2dnaa1



not modelled 5.7 30
Fold:RuvA C-terminal domain-like
Superfamily:UBA-like
Family:UBA domain
59d1ujoa_



not modelled 5.7 16
Fold:CH domain-like
Superfamily:Calponin-homology domain, CH-domain
Family:Calponin-homology domain, CH-domain
60d1u7ka_



not modelled 5.5 18
Fold:Retrovirus capsid protein, N-terminal core domain
Superfamily:Retrovirus capsid protein, N-terminal core domain
Family:Retrovirus capsid protein, N-terminal core domain
61c3gznB_



not modelled 5.3 15
PDB header:protein binding/ligase
Chain: B: PDB Molecule:nedd8-activating enzyme e1 catalytic subunit;
PDBTitle: structure of nedd8-activating enzyme in complex with nedd8 and mln4924
62d1su7a_



not modelled 5.3 25
Fold:Prismane protein-like
Superfamily:Prismane protein-like
Family:Carbon monoxide dehydrogenase
63d1vm6a2



not modelled 5.2 25
Fold:FwdE/GAPDH domain-like
Superfamily:Glyceraldehyde-3-phosphate dehydrogenase-like, C-terminal domain
Family:Dihydrodipicolinate reductase-like
64c1tz5A_



not modelled 5.1 27
PDB header:hormone/growth factor
Chain: A: PDB Molecule:chimera of pancreatic hormone and neuropeptide y;
PDBTitle: [pnpy19-23]-hpp bound to dpc micelles

Binding site prediction 

Due to computational demand, binding site predictions are not run for batch jobs

If you want to predict binding sites, please manually submit your model of choice to 3DLigandSite