Phyre Home Retrieve Phyre Job Id
Emailmdejesus@rockefeller.edu
DescriptionRVBD0608_(-)_703247_703492
DateFri Jul 26 01:50:16 BST 2019
Unique Job ID8fa684571d1dbfc0
SequenceMALNIKDPSV ... Download FASTA
Job Typenormal
Job Expiry

Summary 

Top model
Image coloured by rainbow N → C terminus
Model dimensions (Å):X:32.190 Y:38.572 Z:22.241
Model (left) based on template c4xgqD_
Top template information
PDB header:toxin/antitoxin
Chain: D: PDB Molecule:antitoxin vapb30;
PDBTitle: crystal structure of addiction module from mycobacterial species
Confidence and coverage
Confidence: 87.0% Coverage: 37%
30 residues ( 37% of your sequence) have been modelled with 87.0% confidence by the single highest scoring template.
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Sequence analysis 

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Secondary structure and disorder prediction [Show] 

Domain analysis [Show] 

Detailed template information [Hide] 

 

#
Template Alignment Coverage3D Model Confidence
% i.d. Template Information
1c4xgqD_



87.0 27
PDB header:toxin/antitoxin
Chain: D: PDB Molecule:antitoxin vapb30;
PDBTitle: crystal structure of addiction module from mycobacterial species
2c4xgqB_



86.6 27
PDB header:toxin/antitoxin
Chain: B: PDB Molecule:antitoxin vapb30;
PDBTitle: crystal structure of addiction module from mycobacterial species
3c6ajnF_



60.1 15
PDB header:toxin
Chain: F: PDB Molecule:duf1778 domain-containing protein;
PDBTitle: crystal structure of atatr bound with accoa
4c6gtsC_



58.6 15
PDB header:transcription
Chain: C: PDB Molecule:duf1778 domain-containing protein;
PDBTitle: structure of the atat-atar complex bound dna
5c2k5jB_



53.6 13
PDB header:structural genomics, unknown function
Chain: B: PDB Molecule:uncharacterized protein yiif;
PDBTitle: solution structure of protein yiif from shigella flexneri2 serotype 5b (strain 8401) . northeast structural genomics3 consortium target sft1
6c4xgrH_



46.9 25
PDB header:toxin/antitoxin
Chain: H: PDB Molecule:antitoxin vapb30;
PDBTitle: crystal structure of addiction module from mycobacterial species
7d1y9ba1



44.2 21
Fold:Ribbon-helix-helix
Superfamily:Ribbon-helix-helix
Family:VCA0319-like
8c4xgrF_



36.5 27
PDB header:toxin/antitoxin
Chain: F: PDB Molecule:antitoxin vapb30;
PDBTitle: crystal structure of addiction module from mycobacterial species
9c2h1oH_



34.4 20
PDB header:gene regulation/dna complex
Chain: H: PDB Molecule:trafficking protein a;
PDBTitle: structure of fitab bound to ir36 dna fragment
10d2bsqe1



32.6 20
Fold:Ribbon-helix-helix
Superfamily:Ribbon-helix-helix
Family:Trafficking protein A-like
11c1zvvA_



31.8 21
PDB header:transcription/dna
Chain: A: PDB Molecule:glucose-resistance amylase regulator;
PDBTitle: crystal structure of a ccpa-crh-dna complex
12c6a7vU_



29.0 15
PDB header:toxin/antitoxin
Chain: U: PDB Molecule:antitoxin vapb11;
PDBTitle: crystal structure of mycobacterium tuberculosis vapbc11 toxin-2 antitoxin complex
13c2q2kA_



26.5 13
PDB header:dna binding protein/dna
Chain: A: PDB Molecule:hypothetical protein;
PDBTitle: structure of nucleic-acid binding protein
14c2kelB_



25.8 27
PDB header:transcription repressor
Chain: B: PDB Molecule:uncharacterized protein 56b;
PDBTitle: structure of the transcription regulator svtr from the2 hyperthermophilic archaeal virus sirv1
15c3eabK_



24.9 50
PDB header:cell cycle
Chain: K: PDB Molecule:chmp1b;
PDBTitle: crystal structure of spastin mit in complex with escrt iii
16c5h64b_



19.7 15
PDB header:transferase
Chain: B: PDB Molecule:regulatory-associated protein of mtor;
PDBTitle: cryo-em structure of mtorc1
17c2q2kB_



19.1 14
PDB header:dna binding protein/dna
Chain: B: PDB Molecule:hypothetical protein;
PDBTitle: structure of nucleic-acid binding protein
18d2a4da1



18.7 11
Fold:UBC-like
Superfamily:UBC-like
Family:UBC-related
19d1o0xa_



15.3 22
Fold:Creatinase/aminopeptidase
Superfamily:Creatinase/aminopeptidase
Family:Creatinase/aminopeptidase
20c3hxxA_



15.1 20
PDB header:ligase
Chain: A: PDB Molecule:alanyl-trna synthetase;
PDBTitle: crystal structure of catalytic fragment of e. coli alars in complex2 with amppcp
21c3tavA_



not modelled 14.7 13
PDB header:hydrolase
Chain: A: PDB Molecule:methionine aminopeptidase;
PDBTitle: crystal structure of a methionine aminopeptidase from mycobacterium2 abscessus
22c1wkbA_



not modelled 14.4 22
PDB header:ligase
Chain: A: PDB Molecule:leucyl-trna synthetase;
PDBTitle: crystal structure of leucyl-trna synthetase from the2 archaeon pyrococcus horikoshii reveals a novel editing3 domain orientation
23c4v1af_



not modelled 13.7 8
PDB header:ribosome
Chain: F: PDB Molecule:
PDBTitle: structure of the large subunit of the mammalian mitoribosome, part 22 of 2
24c3um2B_



not modelled 13.1 67
PDB header:membrane protein/transport protein
Chain: B: PDB Molecule:charged multivesicular body protein 5;
PDBTitle: crystal structure of the brox bro1 domain in complex with the c-2 terminal tail of chmp5
25c3um2E_



not modelled 13.1 67
PDB header:membrane protein/transport protein
Chain: E: PDB Molecule:charged multivesicular body protein 5;
PDBTitle: crystal structure of the brox bro1 domain in complex with the c-2 terminal tail of chmp5
26c3um1E_



not modelled 13.1 67
PDB header:membrane protein/transport protein
Chain: E: PDB Molecule:charged multivesicular body protein 5;
PDBTitle: crystal structure of the brox bro1 domain in complex with the c-2 terminal tail of chmp5
27c3um0B_



not modelled 13.0 67
PDB header:membrane protein/transport protein
Chain: B: PDB Molecule:charged multivesicular body protein 5;
PDBTitle: crystal structure of the brox bro1 domain in complex with the c-2 terminal tail of chmp5
28c4egcA_



not modelled 12.5 21
PDB header:transcription/hydrolase
Chain: A: PDB Molecule:maltose-binding periplasmic protein, homeobox protein six1
PDBTitle: crystal structure of mbp-fused human six1 bound to human eya2 eya2 domain
29c3iacA_



not modelled 10.8 14
PDB header:isomerase
Chain: A: PDB Molecule:glucuronate isomerase;
PDBTitle: 2.2 angstrom crystal structure of glucuronate isomerase from2 salmonella typhimurium.
30d1p94a_



not modelled 10.5 25
Fold:Ribbon-helix-helix
Superfamily:Ribbon-helix-helix
Family:CopG-like
31d2gg2a1



not modelled 10.1 16
Fold:Creatinase/aminopeptidase
Superfamily:Creatinase/aminopeptidase
Family:Creatinase/aminopeptidase
32c3dfuB_



not modelled 10.0 20
PDB header:oxidoreductase
Chain: B: PDB Molecule:uncharacterized protein from 6-phosphogluconate
PDBTitle: crystal structure of a putative rossmann-like dehydrogenase (cgl2689)2 from corynebacterium glutamicum at 2.07 a resolution
33c5vgtA_



not modelled 9.7 60
PDB header:viral protein
Chain: A: PDB Molecule:gene 7 protein;
PDBTitle: x-ray structure of bacteriophage sf6 tail adaptor protein gp7
34c6ci7A_



not modelled 9.6 28
PDB header:biosynthetic protein
Chain: A: PDB Molecule:ycao;
PDBTitle: the structure of ycao from methanopyrus kandleri bound with amppcp and2 mg2+
35d1cuka1



not modelled 8.9 24
Fold:RuvA C-terminal domain-like
Superfamily:DNA helicase RuvA subunit, C-terminal domain
Family:DNA helicase RuvA subunit, C-terminal domain
36c2kvcA_



not modelled 8.9 8
PDB header:unknown function
Chain: A: PDB Molecule:putative uncharacterized protein;
PDBTitle: solution structure of the mycobacterium tuberculosis protein rv0543c,2 a member of the duf3349 superfamily. seattle structural genomics3 center for infectious disease target mytud.17112.a
37c4ariA_



not modelled 8.5 50
PDB header:ligase/rna
Chain: A: PDB Molecule:leucine--trna ligase;
PDBTitle: ternary complex of e. coli leucyl-trna synthetase, trna(leu) and the2 benzoxaborole an2679 in the editing conformation
38c3m92B_



not modelled 8.4 63
PDB header:structural genomics, unknown function
Chain: B: PDB Molecule:protein ycin;
PDBTitle: the structure of ycin, an unchracterized protein from shigella2 flexneri.
39c2g6pA_



not modelled 8.4 7
PDB header:hydrolase
Chain: A: PDB Molecule:methionine aminopeptidase 1;
PDBTitle: crystal structure of truncated (delta 1-89) human methionine2 aminopeptidase type 1 in complex with pyridyl pyrimidine derivative
40c3tb5C_



not modelled 8.2 7
PDB header:hydrolase
Chain: C: PDB Molecule:methionine aminopeptidase;
PDBTitle: crystal structure of the enterococcus faecalis methionine2 aminopeptidase apo form
41c3gkuB_



not modelled 8.1 33
PDB header:rna binding protein
Chain: B: PDB Molecule:probable rna-binding protein;
PDBTitle: crystal structure of a probable rna-binding protein from clostridium2 symbiosum atcc 14940
42c4qvrA_



not modelled 8.1 22
PDB header:unknown function
Chain: A: PDB Molecule:uncharacterized hypothetical protein ftt_1539c;
PDBTitle: 2.3 angstrom crystal structure of hypothetical protein ftt1539c from2 francisella tularensis.
43c2gz5A_



not modelled 7.6 7
PDB header:hydrolase
Chain: A: PDB Molecule:methionine aminopeptidase 1;
PDBTitle: human type 1 methionine aminopeptidase in complex with ovalicin at 1.12 ang
44d2bj7a1



not modelled 7.1 15
Fold:Ribbon-helix-helix
Superfamily:Ribbon-helix-helix
Family:CopG-like
45c4fo7B_



not modelled 7.0 19
PDB header:hydrolase
Chain: B: PDB Molecule:methionine aminopeptidase;
PDBTitle: pseudomonas aeruginosa metap, in mn form
46d1efva2



not modelled 7.0 11
Fold:DHS-like NAD/FAD-binding domain
Superfamily:DHS-like NAD/FAD-binding domain
Family:C-terminal domain of the electron transfer flavoprotein alpha subunit
47c5ydcA_



not modelled 6.8 13
PDB header:transcription regulator
Chain: A: PDB Molecule:uncharacterized hth-type transcriptional regulator rv1828;
PDBTitle: crystal structure of mercury soaked c-terminal domain of rv1828 from2 mycobacterium tuberculosis
48d1efpa2



not modelled 6.5 11
Fold:DHS-like NAD/FAD-binding domain
Superfamily:DHS-like NAD/FAD-binding domain
Family:C-terminal domain of the electron transfer flavoprotein alpha subunit
49d1j74a_



not modelled 6.5 12
Fold:UBC-like
Superfamily:UBC-like
Family:UBC-related
50c5z5mB_



not modelled 6.4 17
PDB header:lyase
Chain: B: PDB Molecule:predicted protein;
PDBTitle: crystal structure of (s)-allantoin synthase
51c3t0yB_



not modelled 6.4 17
PDB header:transcription regulator/protein binding
Chain: B: PDB Molecule:nepr;
PDBTitle: structure of the phyr anti-anti-sigma domain bound to the anti-sigma2 factor, nepr
52c2akfC_



not modelled 6.4 46
PDB header:protein binding
Chain: C: PDB Molecule:coronin-1a;
PDBTitle: crystal structure of the coiled-coil domain of coronin 1
53c2akfB_



not modelled 6.4 46
PDB header:protein binding
Chain: B: PDB Molecule:coronin-1a;
PDBTitle: crystal structure of the coiled-coil domain of coronin 1
54c2akfA_



not modelled 6.4 46
PDB header:protein binding
Chain: A: PDB Molecule:coronin-1a;
PDBTitle: crystal structure of the coiled-coil domain of coronin 1
55c5ah5B_



not modelled 6.3 50
PDB header:ligase/rna
Chain: B: PDB Molecule:leucine--trna ligase;
PDBTitle: crystal structure of the ternary complex of agrobacterium2 radiobacter k84 agnb2 leurs-trna-leuams
56c2kilA_



not modelled 6.2 11
PDB header:unknown function
Chain: A: PDB Molecule:putative uncharacterized protein;
PDBTitle: nmr structure of the h103g mutant so2144 h-nox domain from2 shewanella oneidensis in the fe(ii)co ligation state
57c5jhiA_



not modelled 6.2 13
PDB header:de novo protein
Chain: A: PDB Molecule:w35;
PDBTitle: solution structure of the de novo mini protein gehe_06
58c1ileA_



not modelled 6.2 44
PDB header:aminoacyl-trna synthetase
Chain: A: PDB Molecule:isoleucyl-trna synthetase;
PDBTitle: isoleucyl-trna synthetase
59c3mx6A_



not modelled 6.1 14
PDB header:hydrolase
Chain: A: PDB Molecule:methionine aminopeptidase;
PDBTitle: crystal structure of methionine aminopeptidase from rickettsia2 prowazekii bound to methionine
60c5x3tA_



not modelled 6.0 25
PDB header:antitoxin/toxin
Chain: A: PDB Molecule:antitoxin vapb26;
PDBTitle: vapbc from mycobacterium tuberculosis
61c1wz2B_



not modelled 6.0 25
PDB header:ligase/rna
Chain: B: PDB Molecule:leucyl-trna synthetase;
PDBTitle: the crystal structure of leucyl-trna synthetase and trna(leucine)2 complex
62d2hzaa1



not modelled 5.9 10
Fold:Ribbon-helix-helix
Superfamily:Ribbon-helix-helix
Family:CopG-like
63d1u9pa1



not modelled 5.8 21
Fold:Ribbon-helix-helix
Superfamily:Ribbon-helix-helix
Family:Arc/Mnt-like phage repressors
64c5h7pB_



not modelled 5.8 15
PDB header:protein transport
Chain: B: PDB Molecule:vacuolar protein-sorting-associated protein 46;
PDBTitle: nmr structure of the vta1ntd-did2(176-204) complex
65d1st6a5



not modelled 5.8 10
Fold:Four-helical up-and-down bundle
Superfamily:alpha-catenin/vinculin-like
Family:alpha-catenin/vinculin
66c3o0lB_



not modelled 5.7 43
PDB header:structural genomics, unknown function
Chain: B: PDB Molecule:uncharacterized protein;
PDBTitle: crystal structure of a pfam duf1425 family member (shew_1734) from2 shewanella sp. pv-4 at 1.81 a resolution
67c2l8nA_



not modelled 5.7 29
PDB header:transcription regulator
Chain: A: PDB Molecule:transcriptional repressor cytr;
PDBTitle: nmr structure of the cytidine repressor dna binding domain in presence2 of operator half-site dna
68c5jr6B_



not modelled 5.5 9
PDB header:hydrolase
Chain: B: PDB Molecule:peptidase, putative;
PDBTitle: the xray crystal structure of p. falciparum aminopeptidase p in2 complex with apstatin
69c3t0yD_



not modelled 5.5 17
PDB header:transcription regulator/protein binding
Chain: D: PDB Molecule:nepr;
PDBTitle: structure of the phyr anti-anti-sigma domain bound to the anti-sigma2 factor, nepr
70c1qu2A_



not modelled 5.5 50
PDB header:ligase/rna
Chain: A: PDB Molecule:isoleucyl-trna synthetase;
PDBTitle: insights into editing from an ile-trna synthetase structure2 with trna(ile) and mupirocin
71c2xc7A_



not modelled 5.4 18
PDB header:rna binding protein
Chain: A: PDB Molecule:phosphorylated adapter rna export protein;
PDBTitle: solution structure of phax-rbd in complex with ssrna
72d1chma2



not modelled 5.4 26
Fold:Creatinase/aminopeptidase
Superfamily:Creatinase/aminopeptidase
Family:Creatinase/aminopeptidase
73c2xpiE_



not modelled 5.3 45
PDB header:cell cycle
Chain: E: PDB Molecule:anaphase-promoting complex subunit hcn1 hcn1/cdc26,20s
PDBTitle: crystal structure of apc/c hetero-tetramer cut9-hcn1
74c6q8aA_



not modelled 5.2 38
PDB header:ligase
Chain: A: PDB Molecule:leucine--trna ligase;
PDBTitle: neisseria gonorrhoeae leucyl-trna synthetase in complex with 5'-o-(n-2 (l-leucyl)-sulfamoyl)cytidine
75c2bytD_



not modelled 5.2 50
PDB header:synthetase
Chain: D: PDB Molecule:leucyl-trna synthetase;
PDBTitle: thermus thermophilus leucyl-trna synthetase complexed with2 a trnaleu transcript in the post-editing conformation
76d1myka_



not modelled 5.1 21
Fold:Ribbon-helix-helix
Superfamily:Ribbon-helix-helix
Family:Arc/Mnt-like phage repressors
77c5v2gC_



not modelled 5.1 20
PDB header:de novo protein
Chain: C: PDB Molecule:20-mer peptide;
PDBTitle: de novo design of novel covalent constrained meso-size peptide2 scaffolds with unique tertiary structures
78c5v2gB_



not modelled 5.1 20
PDB header:de novo protein
Chain: B: PDB Molecule:20-mer peptide;
PDBTitle: de novo design of novel covalent constrained meso-size peptide2 scaffolds with unique tertiary structures
79c5v2gA_



not modelled 5.1 20
PDB header:de novo protein
Chain: A: PDB Molecule:20-mer peptide;
PDBTitle: de novo design of novel covalent constrained meso-size peptide2 scaffolds with unique tertiary structures
80c2bj3D_



not modelled 5.0 14
PDB header:transcription
Chain: D: PDB Molecule:nickel responsive regulator;
PDBTitle: nikr-apo

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